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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for TBL1XR1

check button Gene summary
Gene informationGene symbol

TBL1XR1

Gene ID

79718

Gene nametransducin beta like 1 X-linked receptor 1
SynonymsC21|DC42|IRA1|MRD41|TBLR1
Cytomap

3q26.32

Type of geneprotein-coding
DescriptionF-box-like/WD repeat-containing protein TBL1XR1TBL1-related protein 1nuclear receptor co-repressor/HDAC3 complex subunitnuclear receptor corepressor/HDAC3 complex subunit TBLR1
Modification date20180523
UniProtAcc

Q9BZK7

ContextPubMed: TBL1XR1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TBL1XR1

GO:0000122

negative regulation of transcription by RNA polymerase II

12628926

TBL1XR1

GO:0045893

positive regulation of transcription, DNA-templated

18193033

TBL1XR1

GO:0045944

positive regulation of transcription by RNA polymerase II

18193033


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Exon skipping events across known transcript of Ensembl for TBL1XR1 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for TBL1XR1

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for TBL1XR1

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3901033176751985:176752113:176755885:176755960:176756100:176756222176755885:176755960ENSG00000177565.11ENST00000457928.2,ENST00000430069.1
exon_skip_3901053176768345:176768398:176769291:176769514:176771560:176771706176769291:176769514ENSG00000177565.11ENST00000428970.1,ENST00000424913.1,ENST00000457928.2,ENST00000430069.1
exon_skip_3901073176771665:176771706:176782707:176782810:176797614:176797733176782707:176782810ENSG00000177565.11ENST00000450267.1,ENST00000422442.1,ENST00000443315.1
exon_skip_3901093176771665:176771706:176782707:176782810:176816253:176816329176782707:176782810ENSG00000177565.11ENST00000457928.2,ENST00000430069.1,ENST00000422066.1
exon_skip_3901123176771665:176771706:176782707:176782810:176914127:176914211176782707:176782810ENSG00000177565.11ENST00000437738.1
exon_skip_3901133176771665:176771706:176782707:176782810:176914908:176914971176782707:176782810ENSG00000177565.11ENST00000352800.5
exon_skip_3901263176771665:176771706:176816253:176816329:176914127:176914211176816253:176816329ENSG00000177565.11ENST00000424913.1
exon_skip_3901273176771665:176771706:176816253:176816329:176914908:176914971176816253:176816329ENSG00000177565.11ENST00000431421.1
exon_skip_3901353176782707:176782810:176796419:176796566:176797614:176797733176796419:176796566ENSG00000177565.11ENST00000413084.1
exon_skip_3901383176782707:176782810:176797614:176797733:176816253:176816329176797614:176797733ENSG00000177565.11ENST00000422442.1,ENST00000443315.1
exon_skip_3901423176782707:176782810:176797614:176797733:176914908:176914971176797614:176797733ENSG00000177565.11ENST00000450267.1
exon_skip_3901453176782707:176782810:176804752:176804829:176816253:176816329176804752:176804829ENSG00000177565.11ENST00000431674.1
exon_skip_3901473176782707:176782810:176808938:176808968:176816253:176816329176808938:176808968ENSG00000177565.11ENST00000427349.1
exon_skip_3901563176782707:176782810:176816253:176816329:176878658:176878776176816253:176816329ENSG00000177565.11ENST00000422066.1
exon_skip_3901583176782707:176782810:176816253:176816329:176914908:176914971176816253:176816329ENSG00000177565.11ENST00000457928.2
exon_skip_3901833176797614:176797733:176816253:176816329:176914127:176914211176816253:176816329ENSG00000177565.11ENST00000443315.1
exon_skip_3901843176797614:176797733:176816253:176816329:176914908:176914971176816253:176816329ENSG00000177565.11ENST00000422442.1,ENST00000413084.1
exon_skip_3902003176816253:176816329:176849150:176849237:176914908:176914971176849150:176849237ENSG00000177565.11ENST00000427349.1
exon_skip_3902063176816253:176816329:176878658:176878776:176914908:176914971176878658:176878776ENSG00000177565.11ENST00000422066.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for TBL1XR1

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3901033176751985:176752113:176755885:176755960:176756100:176756222176755885:176755960ENSG00000177565.11ENST00000430069.1,ENST00000457928.2
exon_skip_3901053176768345:176768398:176769291:176769514:176771560:176771706176769291:176769514ENSG00000177565.11ENST00000430069.1,ENST00000457928.2,ENST00000428970.1,ENST00000424913.1
exon_skip_3901073176771665:176771706:176782707:176782810:176797614:176797733176782707:176782810ENSG00000177565.11ENST00000450267.1,ENST00000443315.1,ENST00000422442.1
exon_skip_3901093176771665:176771706:176782707:176782810:176816253:176816329176782707:176782810ENSG00000177565.11ENST00000430069.1,ENST00000457928.2,ENST00000422066.1
exon_skip_3901123176771665:176771706:176782707:176782810:176914127:176914211176782707:176782810ENSG00000177565.11ENST00000437738.1
exon_skip_3901133176771665:176771706:176782707:176782810:176914908:176914971176782707:176782810ENSG00000177565.11ENST00000352800.5
exon_skip_3901263176771665:176771706:176816253:176816329:176914127:176914211176816253:176816329ENSG00000177565.11ENST00000424913.1
exon_skip_3901273176771665:176771706:176816253:176816329:176914908:176914971176816253:176816329ENSG00000177565.11ENST00000431421.1
exon_skip_3901353176782707:176782810:176796419:176796566:176797614:176797733176796419:176796566ENSG00000177565.11ENST00000413084.1
exon_skip_3901383176782707:176782810:176797614:176797733:176816253:176816329176797614:176797733ENSG00000177565.11ENST00000443315.1,ENST00000422442.1
exon_skip_3901423176782707:176782810:176797614:176797733:176914908:176914971176797614:176797733ENSG00000177565.11ENST00000450267.1
exon_skip_3901453176782707:176782810:176804752:176804829:176816253:176816329176804752:176804829ENSG00000177565.11ENST00000431674.1
exon_skip_3901473176782707:176782810:176808938:176808968:176816253:176816329176808938:176808968ENSG00000177565.11ENST00000427349.1
exon_skip_3901563176782707:176782810:176816253:176816329:176878658:176878776176816253:176816329ENSG00000177565.11ENST00000422066.1
exon_skip_3901583176782707:176782810:176816253:176816329:176914908:176914971176816253:176816329ENSG00000177565.11ENST00000457928.2
exon_skip_3901833176797614:176797733:176816253:176816329:176914127:176914211176816253:176816329ENSG00000177565.11ENST00000443315.1
exon_skip_3901843176797614:176797733:176816253:176816329:176914908:176914971176816253:176816329ENSG00000177565.11ENST00000422442.1,ENST00000413084.1
exon_skip_3902003176816253:176816329:176849150:176849237:176914908:176914971176849150:176849237ENSG00000177565.11ENST00000427349.1
exon_skip_3902063176816253:176816329:176878658:176878776:176914908:176914971176878658:176878776ENSG00000177565.11ENST00000422066.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for TBL1XR1

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000004300691767827071767828103UTR-3CDS
ENST000004579281767827071767828103UTR-3CDS
ENST000004579281768162531768163293UTR-3UTR
ENST00000430069176769291176769514Frame-shift
ENST00000457928176769291176769514Frame-shift
ENST00000430069176755885176755960In-frame
ENST00000457928176755885176755960In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000004300691767827071767828103UTR-3CDS
ENST000004579281767827071767828103UTR-3CDS
ENST000004579281768162531768163293UTR-3UTR
ENST00000430069176769291176769514Frame-shift
ENST00000457928176769291176769514Frame-shift
ENST00000430069176755885176755960In-frame
ENST00000457928176755885176755960In-frame

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Infer the effects of exon skipping event on protein functional features for TBL1XR1

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000430069796551417675588517675596013081382349374
ENST00000457928420951417675588517675596015171591349374

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000430069796551417675588517675596013081382349374
ENST00000457928420951417675588517675596015171591349374

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9BZK7349374352357Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374352357Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374361368Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374361368Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374371377Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374371377Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK73493742514ChainID=PRO_0000051266;Note=F-box-like/WD repeat-containing protein TBL1XR1
Q9BZK73493742514ChainID=PRO_0000051266;Note=F-box-like/WD repeat-containing protein TBL1XR1
Q9BZK7349374347386RepeatNote=WD 5
Q9BZK7349374347386RepeatNote=WD 5


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9BZK7349374352357Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374352357Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374361368Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374361368Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374371377Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK7349374371377Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4LG9
Q9BZK73493742514ChainID=PRO_0000051266;Note=F-box-like/WD repeat-containing protein TBL1XR1
Q9BZK73493742514ChainID=PRO_0000051266;Note=F-box-like/WD repeat-containing protein TBL1XR1
Q9BZK7349374347386RepeatNote=WD 5
Q9BZK7349374347386RepeatNote=WD 5


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SNVs in the skipped exons for TBL1XR1

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
TBL1XR1_BRCA_exon_skip_390105_psi_boxplot.png
boxplot
TBL1XR1_LUAD_exon_skip_390105_psi_boxplot.png
boxplot
TBL1XR1_STAD_exon_skip_390105_psi_boxplot.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
BRCATCGA-A8-A096-01exon_skip_390105
176769292176769514176769296176769297Frame_Shift_DelTA-p.I141fs
LIHCTCGA-G3-A3CJ-01exon_skip_390105
176769292176769514176769324176769324Frame_Shift_DelT-p.N132fs
STADTCGA-BR-4361-01exon_skip_390105
176769292176769514176769342176769342Frame_Shift_DelT-p.N126fs
STADTCGA-BR-8078-01exon_skip_390105
176769292176769514176769342176769342Frame_Shift_DelT-p.N126fs
STADTCGA-CG-5726-01exon_skip_390105
176769292176769514176769342176769342Frame_Shift_DelT-p.N126fs
STADTCGA-FP-A4BE-01exon_skip_390105
176769292176769514176769342176769342Frame_Shift_DelT-p.N126fs
LGGTCGA-DB-A4XD-01exon_skip_390113
exon_skip_390112
exon_skip_390107
exon_skip_390109
176782708176782810176782756176782756Frame_Shift_DelT-p.S5fs
BRCATCGA-BH-A18P-01exon_skip_390105
176769292176769514176769295176769296Frame_Shift_Ins-TAp.A141fs
BRCATCGA-BH-A18R-01exon_skip_390105
176769292176769514176769295176769296Frame_Shift_Ins-TAp.A141fs
BRCATCGA-BH-A1FL-01exon_skip_390105
176769292176769514176769295176769296Frame_Shift_Ins-TAp.A141fs
BRCATCGA-A8-A096-01exon_skip_390105
176769292176769514176769299176769300Frame_Shift_Ins-TGp.A142fs
BLCATCGA-KQ-A41N-01exon_skip_390105
176769292176769514176769341176769342Frame_Shift_Ins-Tp.N126fs
LUADTCGA-44-2656-01exon_skip_390105
176769292176769514176769341176769342Frame_Shift_Ins-Tp.N126fs
SKCMTCGA-EE-A2A5-06exon_skip_390103
176755886176755960176755937176755937Nonsense_MutationCTp.W357*
SKCMTCGA-EE-A2A5-06exon_skip_390103
176755886176755960176755937176755937Nonsense_MutationCTp.W357X
PRADTCGA-CH-5752-01exon_skip_390103
176755886176755960176755961176755961Splice_SiteCG.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
TBL1XR1_176768345_176768398_176769291_176769514_176771560_176771706_TCGA-BH-A18R-01Sample: TCGA-BH-A18R-01
Cancer type: BRCA
ESID: exon_skip_390105
Skipped exon start: 176769292
Skipped exon end: 176769514
Mutation start: 176769295
Mutation end: 176769296
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: TA
AAchange: p.A141fs
exon_skip_390105_BRCA_TCGA-BH-A18R-01.png
boxplot
TBL1XR1_176768345_176768398_176769291_176769514_176771560_176771706_TCGA-44-2656-01Sample: TCGA-44-2656-01
Cancer type: LUAD
ESID: exon_skip_390105
Skipped exon start: 176769292
Skipped exon end: 176769514
Mutation start: 176769341
Mutation end: 176769342
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.N126fs
exon_skip_106588_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_10918_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_134787_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_291076_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_347690_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_353194_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_374468_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_374469_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_3814_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_3815_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_390105_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_451924_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_451926_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_46116_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_48232_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_503611_LUAD_TCGA-44-2656-01.png
boxplot
exon_skip_506466_LUAD_TCGA-44-2656-01.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE176769292176769514176769300176769303Frame_Shift_DelGTAT-p.HT139fs
SNUC4_LARGE_INTESTINE176769292176769514176769342176769342Frame_Shift_DelT-p.N126fs
LNCAPCLONEFGC_PROSTATE176769292176769514176769341176769342Frame_Shift_Ins-Tp.N126fs
LNCAPCLONEFGC_PROSTATE176755886176755960176755900176755900Missense_MutationCTp.D370N
CAL51_BREAST176769292176769514176769460176769460Missense_MutationCTp.V87I
HEC251_ENDOMETRIUM176782708176782810176782715176782715Missense_MutationTGp.Q17H
CCK81_LARGE_INTESTINE176782708176782810176782757176782757Missense_MutationTCp.I3M
GSS_STOMACH176782708176782810176782761176782761Missense_MutationCTp.S2N
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE176755886176755960176755960176755960Splice_SiteTCp.N350D

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for TBL1XR1

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TBL1XR1


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TBL1XR1


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RelatedDrugs for TBL1XR1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TBL1XR1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
TBL1XR1C0345967Malignant mesothelioma1CTD_human
TBL1XR1C1865644Plantar Lipomatosis, Unusual Facies, and Developmental Delay1UNIPROT