Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_390681 | 3 | 185635502:185635513:185636152:185636223:185637224:185637284 | 185636152:185636223 | ENSG00000136527.13 | ENST00000414862.1 |
exon_skip_390682 | 3 | 185635502:185635513:185636152:185636226:185637224:185637284 | 185636152:185636226 | ENSG00000136527.13 | ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000466832.1,ENST00000463328.1,ENST00000456380.1 |
exon_skip_390683 | 3 | 185636152:185636223:185637224:185637284:185638891:185638975 | 185637224:185637284 | ENSG00000136527.13 | ENST00000414862.1 |
exon_skip_390684 | 3 | 185636152:185636226:185637224:185637284:185638891:185638969 | 185637224:185637284 | ENSG00000136527.13 | ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000466832.1,ENST00000463328.1,ENST00000456380.1 |
exon_skip_390687 | 3 | 185637224:185637284:185638891:185638975:185639798:185639895 | 185638891:185638975 | ENSG00000136527.13 | ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000414862.1,ENST00000466832.1,ENST00000463328.1,ENST00000456380.1 |
exon_skip_390695 | 3 | 185639830:185639914:185641583:185641772:185643251:185643414 | 185641583:185641772 | ENSG00000136527.13 | ENST00000382191.4,ENST00000487615.1,ENST00000453386.2,ENST00000492417.1,ENST00000456380.1 |
exon_skip_390697 | 3 | 185639830:185639914:185641583:185641796:185643251:185643414 | 185641583:185641796 | ENSG00000136527.13 | ENST00000465245.1 |
exon_skip_390701 | 3 | 185641583:185641772:185643251:185643414:185655612:185655775 | 185643251:185643414 | ENSG00000136527.13 | ENST00000382191.4 |
exon_skip_390708 | 3 | 185643251:185643414:185644388:185644522:185649364:185649406 | 185644388:185644522 | ENSG00000136527.13 | ENST00000487615.1,ENST00000477939.1,ENST00000456380.1 |
exon_skip_390709 | 3 | 185643251:185643414:185644388:185644522:185655612:185655775 | 185644388:185644522 | ENSG00000136527.13 | ENST00000485530.1 |
exon_skip_390718 | 3 | 185644514:185644522:185649364:185649640:185655612:185655775 | 185649364:185649640 | ENSG00000136527.13 | ENST00000456380.1 |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_390681 | 3 | 185635502:185635513:185636152:185636223:185637224:185637284 | 185636152:185636223 | ENSG00000136527.13 | ENST00000414862.1 |
exon_skip_390682 | 3 | 185635502:185635513:185636152:185636226:185637224:185637284 | 185636152:185636226 | ENSG00000136527.13 | ENST00000453386.2,ENST00000492417.1,ENST00000463328.1,ENST00000466832.1,ENST00000487615.1,ENST00000456380.1,ENST00000382191.4 |
exon_skip_390683 | 3 | 185636152:185636223:185637224:185637284:185638891:185638975 | 185637224:185637284 | ENSG00000136527.13 | ENST00000414862.1 |
exon_skip_390684 | 3 | 185636152:185636226:185637224:185637284:185638891:185638969 | 185637224:185637284 | ENSG00000136527.13 | ENST00000453386.2,ENST00000492417.1,ENST00000463328.1,ENST00000466832.1,ENST00000487615.1,ENST00000456380.1,ENST00000382191.4 |
exon_skip_390687 | 3 | 185637224:185637284:185638891:185638975:185639798:185639895 | 185638891:185638975 | ENSG00000136527.13 | ENST00000453386.2,ENST00000492417.1,ENST00000463328.1,ENST00000414862.1,ENST00000466832.1,ENST00000487615.1,ENST00000456380.1,ENST00000382191.4 |
exon_skip_390695 | 3 | 185639830:185639914:185641583:185641772:185643251:185643414 | 185641583:185641772 | ENSG00000136527.13 | ENST00000453386.2,ENST00000492417.1,ENST00000487615.1,ENST00000456380.1,ENST00000382191.4 |
exon_skip_390697 | 3 | 185639830:185639914:185641583:185641796:185643251:185643414 | 185641583:185641796 | ENSG00000136527.13 | ENST00000465245.1 |
exon_skip_390701 | 3 | 185641583:185641772:185643251:185643414:185655612:185655775 | 185643251:185643414 | ENSG00000136527.13 | ENST00000382191.4 |
exon_skip_390708 | 3 | 185643251:185643414:185644388:185644522:185649364:185649406 | 185644388:185644522 | ENSG00000136527.13 | ENST00000487615.1,ENST00000456380.1,ENST00000477939.1 |
exon_skip_390709 | 3 | 185643251:185643414:185644388:185644522:185655612:185655775 | 185644388:185644522 | ENSG00000136527.13 | ENST00000485530.1 |
exon_skip_390718 | 3 | 185644514:185644522:185649364:185649640:185655612:185655775 | 185649364:185649640 | ENSG00000136527.13 | ENST00000456380.1 |
exon_skip_390721 | 3 | 185649541:185649640:185652216:185652293:185654025:185654388 | 185652216:185652293 | ENSG00000136527.13 | ENST00000471134.1 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
P62995 | 111 | 174 | 39 | 288 | Alternative sequence | ID=VSP_005899;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9212162;Dbxref=PMID:9212162 |
P62995 | 111 | 174 | 120 | 124 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 144 | 151 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 153 | 168 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 2 | 288 | Chain | ID=PRO_0000081983;Note=Transformer-2 protein homolog beta |
P62995 | 111 | 174 | 31 | 113 | Compositional bias | Note=Arg/Ser-rich (RS1 domain) |
P62995 | 111 | 174 | 118 | 196 | Domain | Note=RRM;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00176 |
P62995 | 111 | 174 | 116 | 118 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 131 | 139 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 169 | 179 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 213 | 240 | 39 | 288 | Alternative sequence | ID=VSP_005899;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9212162;Dbxref=PMID:9212162 |
P62995 | 213 | 240 | 2 | 288 | Chain | ID=PRO_0000081983;Note=Transformer-2 protein homolog beta |
P62995 | 213 | 240 | 231 | 287 | Compositional bias | Note=Arg/Ser-rich (RS2 domain) |
P62995 | 213 | 240 | 215 | 215 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163 |
P62995 | 213 | 240 | 237 | 237 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163 |
P62995 | 213 | 240 | 193 | 230 | Region | Note=Linker |
P62995 | 241 | 260 | 39 | 288 | Alternative sequence | ID=VSP_005899;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9212162;Dbxref=PMID:9212162 |
P62995 | 241 | 260 | 2 | 288 | Chain | ID=PRO_0000081983;Note=Transformer-2 protein homolog beta |
P62995 | 241 | 260 | 231 | 287 | Compositional bias | Note=Arg/Ser-rich (RS2 domain) |
P62995 | 241 | 260 | 241 | 241 | Modified residue | Note=Asymmetric dimethylarginine%3B alternate;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315 |
P62995 | 241 | 260 | 241 | 241 | Modified residue | Note=Dimethylated arginine%3B alternate;Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244|PubMed:15782174,ECO:0000269|Ref.7;Dbxref=PMID:15782174 |
P62995 | 241 | 260 | 241 | 241 | Modified residue | Note=Omega-N-methylarginine%3B alternate;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
P62995 | 111 | 174 | 39 | 288 | Alternative sequence | ID=VSP_005899;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9212162;Dbxref=PMID:9212162 |
P62995 | 111 | 174 | 120 | 124 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 144 | 151 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 153 | 168 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 2 | 288 | Chain | ID=PRO_0000081983;Note=Transformer-2 protein homolog beta |
P62995 | 111 | 174 | 31 | 113 | Compositional bias | Note=Arg/Ser-rich (RS1 domain) |
P62995 | 111 | 174 | 118 | 196 | Domain | Note=RRM;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00176 |
P62995 | 111 | 174 | 116 | 118 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 131 | 139 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 111 | 174 | 169 | 179 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2CQC |
P62995 | 213 | 240 | 39 | 288 | Alternative sequence | ID=VSP_005899;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9212162;Dbxref=PMID:9212162 |
P62995 | 213 | 240 | 2 | 288 | Chain | ID=PRO_0000081983;Note=Transformer-2 protein homolog beta |
P62995 | 213 | 240 | 231 | 287 | Compositional bias | Note=Arg/Ser-rich (RS2 domain) |
P62995 | 213 | 240 | 215 | 215 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163 |
P62995 | 213 | 240 | 237 | 237 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163 |
P62995 | 213 | 240 | 193 | 230 | Region | Note=Linker |
P62995 | 241 | 260 | 39 | 288 | Alternative sequence | ID=VSP_005899;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9212162;Dbxref=PMID:9212162 |
P62995 | 241 | 260 | 2 | 288 | Chain | ID=PRO_0000081983;Note=Transformer-2 protein homolog beta |
P62995 | 241 | 260 | 231 | 287 | Compositional bias | Note=Arg/Ser-rich (RS2 domain) |
P62995 | 241 | 260 | 241 | 241 | Modified residue | Note=Asymmetric dimethylarginine%3B alternate;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315 |
P62995 | 241 | 260 | 241 | 241 | Modified residue | Note=Dimethylated arginine%3B alternate;Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244|PubMed:15782174,ECO:0000269|Ref.7;Dbxref=PMID:15782174 |
P62995 | 241 | 260 | 241 | 241 | Modified residue | Note=Omega-N-methylarginine%3B alternate;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315 |
Depth of coverage in three exons | Mutation description |
| Sample: TCGA-24-1422-01 |
Cancer type: OV |
ESID: exon_skip_390695 |
Skipped exon start: 185641584 |
Skipped exon end: 185641772 |
Mutation start: 185641608 |
Mutation end: 185641608 |
Mutation type: Frame_Shift_Del |
Reference seq: A |
Mutation seq: - |
AAchange: p.F166fs |
| Sample: TCGA-24-1422-01 |
Cancer type: OV |
ESID: exon_skip_390697 |
Skipped exon start: 185641584 |
Skipped exon end: 185641796 |
Mutation start: 185641608 |
Mutation end: 185641608 |
Mutation type: Frame_Shift_Del |
Reference seq: A |
Mutation seq: - |
AAchange: p.F166fs |
exon_skip_390697_OV_TCGA-24-1422-01.png
|
| Sample: TCGA-AO-A03O-01 |
Cancer type: BRCA |
ESID: exon_skip_390695 |
Skipped exon start: 185641584 |
Skipped exon end: 185641772 |
Mutation start: 185641773 |
Mutation end: 185641773 |
Mutation type: Splice_Site |
Reference seq: C |
Mutation seq: G |
AAchange: e4-1 |
exon_skip_361771_BRCA_TCGA-AO-A03O-01.png
|
exon_skip_390695_BRCA_TCGA-AO-A03O-01.png
|
| Sample: TCGA-24-1422-01 |
Cancer type: OV |
ESID: exon_skip_390695 |
Skipped exon start: 185641584 |
Skipped exon end: 185641772 |
Mutation start: 185641608 |
Mutation end: 185641608 |
Mutation type: Frame_Shift_Del |
Reference seq: A |
Mutation seq: - |
AAchange: p.F166fs |
| Sample: TCGA-24-1422-01 |
Cancer type: OV |
ESID: exon_skip_390697 |
Skipped exon start: 185641584 |
Skipped exon end: 185641796 |
Mutation start: 185641608 |
Mutation end: 185641608 |
Mutation type: Frame_Shift_Del |
Reference seq: A |
Mutation seq: - |
AAchange: p.F166fs |
exon_skip_390697_OV_TCGA-24-1422-01.png
|