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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for USP37

check button Gene summary
Gene informationGene symbol

USP37

Gene ID

57695

Gene nameubiquitin specific peptidase 37
Synonyms-
Cytomap

2q35

Type of geneprotein-coding
Descriptionubiquitin carboxyl-terminal hydrolase 37deubiquitinating enzyme 37tmp_locus_50ubiquitin specific protease 37ubiquitin thioesterase 37ubiquitin thiolesterase 37ubiquitin-specific-processing protease 37
Modification date20180523
UniProtAcc

Q86T82

ContextPubMed: USP37 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
USP37

GO:0000082

G1/S transition of mitotic cell cycle

21596315

USP37

GO:0016579

protein deubiquitination

14715245

USP37

GO:0035871

protein K11-linked deubiquitination

21596315

USP37

GO:0071108

protein K48-linked deubiquitination

21596315


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Exon skipping events across known transcript of Ensembl for USP37 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for USP37

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for USP37

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3467592219319537:219319740:219320302:219320441:219321814:219321884219320302:219320441ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467602219320302:219320441:219321814:219321884:219324512:219324628219321814:219321884ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467612219321814:219321884:219324512:219324628:219328028:219328089219324512:219324628ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467622219324512:219324628:219328028:219328089:219330732:219330899219328028:219328089ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467632219328028:219328089:219330732:219330899:219339352:219339608219330732:219330899ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467642219330855:219330899:219337912:219337969:219339352:219339608219337912:219337969ENSG00000135913.6ENST00000473554.1
exon_skip_3467662219341665:219341704:219344372:219344438:219346792:219346957219344372:219344438ENSG00000135913.6ENST00000258399.3,ENST00000475553.1,ENST00000454775.1,ENST00000418019.1
exon_skip_3467682219350386:219350466:219353026:219353144:219360482:219360673219353026:219353144ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467692219362748:219362880:219374701:219374863:219394678:219394763219374701:219374863ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467702219374729:219374863:219394678:219394763:219399331:219399429219394678:219394763ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1
exon_skip_3467712219374729:219374863:219394678:219394763:219410943:219411021219394678:219394763ENSG00000135913.6ENST00000478329.1
exon_skip_3467732219394678:219394763:219399331:219399429:219410943:219411021219399331:219399429ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5
exon_skip_3467752219411641:219411814:219414531:219414632:219418275:219418447219414531:219414632ENSG00000135913.6ENST00000415516.1,ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000338465.5
exon_skip_3467782219418275:219418447:219423220:219423400:219425542:219425606219423220:219423400ENSG00000135913.6ENST00000258399.3,ENST00000418019.1,ENST00000338465.5
exon_skip_3467802219418275:219418447:219423220:219423440:219425542:219425606219423220:219423440ENSG00000135913.6ENST00000454775.1
exon_skip_3467822219423220:219423400:219425542:219425606:219427395:219427536219425542:219425606ENSG00000135913.6ENST00000258399.3,ENST00000338465.5
exon_skip_3467832219423220:219423400:219425542:219425606:219427440:219427536219425542:219425606ENSG00000135913.6ENST00000418019.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for USP37

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3467592219319537:219319740:219320302:219320441:219321814:219321884219320302:219320441ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467602219320302:219320441:219321814:219321884:219324512:219324628219321814:219321884ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467612219321814:219321884:219324512:219324628:219328028:219328089219324512:219324628ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467622219324512:219324628:219328028:219328089:219330732:219330899219328028:219328089ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467632219328028:219328089:219330732:219330899:219339352:219339608219330732:219330899ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467642219330855:219330899:219337912:219337969:219339352:219339608219337912:219337969ENSG00000135913.6ENST00000473554.1
exon_skip_3467662219341665:219341704:219344372:219344438:219346792:219346957219344372:219344438ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000418019.1,ENST00000475553.1
exon_skip_3467682219350386:219350466:219353026:219353144:219360482:219360673219353026:219353144ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467692219362748:219362880:219374701:219374863:219394678:219394763219374701:219374863ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467702219374729:219374863:219394678:219394763:219399331:219399429219394678:219394763ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1
exon_skip_3467712219374729:219374863:219394678:219394763:219410943:219411021219394678:219394763ENSG00000135913.6ENST00000478329.1
exon_skip_3467732219394678:219394763:219399331:219399429:219410943:219411021219399331:219399429ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1,ENST00000338465.5
exon_skip_3467742219410943:219411021:219411641:219411814:219414531:219414547219411641:219411814ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1,ENST00000478329.1,ENST00000338465.5
exon_skip_3467752219411641:219411814:219414531:219414632:219418275:219418447219414531:219414632ENSG00000135913.6ENST00000258399.3,ENST00000454775.1,ENST00000415516.1,ENST00000418019.1,ENST00000338465.5
exon_skip_3467782219418275:219418447:219423220:219423400:219425542:219425606219423220:219423400ENSG00000135913.6ENST00000258399.3,ENST00000418019.1,ENST00000338465.5
exon_skip_3467802219418275:219418447:219423220:219423440:219425542:219425606219423220:219423440ENSG00000135913.6ENST00000454775.1
exon_skip_3467822219423220:219423400:219425542:219425606:219427395:219427536219425542:219425606ENSG00000135913.6ENST00000258399.3,ENST00000338465.5
exon_skip_3467832219423220:219423400:219425542:219425606:219427440:219427536219425542:219425606ENSG00000135913.6ENST00000418019.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for USP37

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002583992194232202194234003UTR-3CDS
ENST000004180192194232202194234003UTR-3CDS
ENST000004547752194232202194234403UTR-3CDS
ENST000002583992194255422194256063UTR-3UTR
ENST000004180192194255422194256063UTR-3UTR
ENST00000258399219320302219320441Frame-shift
ENST00000418019219320302219320441Frame-shift
ENST00000454775219320302219320441Frame-shift
ENST00000258399219321814219321884Frame-shift
ENST00000418019219321814219321884Frame-shift
ENST00000454775219321814219321884Frame-shift
ENST00000258399219324512219324628Frame-shift
ENST00000418019219324512219324628Frame-shift
ENST00000454775219324512219324628Frame-shift
ENST00000258399219328028219328089Frame-shift
ENST00000418019219328028219328089Frame-shift
ENST00000454775219328028219328089Frame-shift
ENST00000258399219330732219330899Frame-shift
ENST00000418019219330732219330899Frame-shift
ENST00000454775219330732219330899Frame-shift
ENST00000258399219353026219353144Frame-shift
ENST00000418019219353026219353144Frame-shift
ENST00000454775219353026219353144Frame-shift
ENST00000258399219394678219394763Frame-shift
ENST00000418019219394678219394763Frame-shift
ENST00000454775219394678219394763Frame-shift
ENST00000258399219399331219399429Frame-shift
ENST00000418019219399331219399429Frame-shift
ENST00000454775219399331219399429Frame-shift
ENST00000258399219414531219414632Frame-shift
ENST00000418019219414531219414632Frame-shift
ENST00000454775219414531219414632Frame-shift
ENST00000258399219344372219344438In-frame
ENST00000418019219344372219344438In-frame
ENST00000454775219344372219344438In-frame
ENST00000258399219374701219374863In-frame
ENST00000418019219374701219374863In-frame
ENST00000454775219374701219374863In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002583992194232202194234003UTR-3CDS
ENST000004180192194232202194234003UTR-3CDS
ENST000004547752194232202194234403UTR-3CDS
ENST000002583992194255422194256063UTR-3UTR
ENST000004180192194255422194256063UTR-3UTR
ENST00000258399219320302219320441Frame-shift
ENST00000418019219320302219320441Frame-shift
ENST00000454775219320302219320441Frame-shift
ENST00000258399219321814219321884Frame-shift
ENST00000418019219321814219321884Frame-shift
ENST00000454775219321814219321884Frame-shift
ENST00000258399219324512219324628Frame-shift
ENST00000418019219324512219324628Frame-shift
ENST00000454775219324512219324628Frame-shift
ENST00000258399219328028219328089Frame-shift
ENST00000418019219328028219328089Frame-shift
ENST00000454775219328028219328089Frame-shift
ENST00000258399219330732219330899Frame-shift
ENST00000418019219330732219330899Frame-shift
ENST00000454775219330732219330899Frame-shift
ENST00000258399219353026219353144Frame-shift
ENST00000418019219353026219353144Frame-shift
ENST00000454775219353026219353144Frame-shift
ENST00000258399219394678219394763Frame-shift
ENST00000418019219394678219394763Frame-shift
ENST00000454775219394678219394763Frame-shift
ENST00000258399219399331219399429Frame-shift
ENST00000418019219399331219399429Frame-shift
ENST00000454775219399331219399429Frame-shift
ENST00000258399219411641219411814Frame-shift
ENST00000418019219411641219411814Frame-shift
ENST00000454775219411641219411814Frame-shift
ENST00000258399219414531219414632Frame-shift
ENST00000418019219414531219414632Frame-shift
ENST00000454775219414531219414632Frame-shift
ENST00000258399219344372219344438In-frame
ENST00000418019219344372219344438In-frame
ENST00000454775219344372219344438In-frame
ENST00000258399219374701219374863In-frame
ENST00000418019219374701219374863In-frame
ENST00000454775219374701219374863In-frame

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Infer the effects of exon skipping event on protein functional features for USP37

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000258399804997921937470121937486312771438288341
ENST00000418019337097921937470121937486311621323288341
ENST00000454775503697921937470121937486312811442288341
ENST00000258399804997921934437221934443822492314612633
ENST00000418019337097921934437221934443821342199612633
ENST00000454775503697921934437221934443822532318612633

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000258399804997921937470121937486312771438288341
ENST00000418019337097921937470121937486311621323288341
ENST00000454775503697921937470121937486312811442288341
ENST00000258399804997921934437221934443822492314612633
ENST00000418019337097921934437221934443821342199612633
ENST00000454775503697921934437221934443822532318612633

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


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SNVs in the skipped exons for USP37

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-G3-A3CJ-01exon_skip_346761
219324513219324628219324520219324520Frame_Shift_DelT-p.N879fs
LIHCTCGA-DD-A39Y-01exon_skip_346761
219324513219324628219324564219324564Frame_Shift_DelA-p.F864fs
LIHCTCGA-DD-A39Y-01exon_skip_346768
219353027219353144219353075219353075Frame_Shift_DelT-p.K514fs
LIHCTCGA-G3-A3CJ-01exon_skip_346768
219353027219353144219353075219353075Frame_Shift_DelT-p.K514fs
LIHCTCGA-G3-A3CJ-01exon_skip_346768
219353027219353144219353122219353122Frame_Shift_DelT-p.R499fs
LIHCTCGA-DD-A3A0-01exon_skip_346768
219353027219353144219353126219353126Frame_Shift_DelG-p.P497fs
LIHCTCGA-DD-A3A0-01exon_skip_346773
219399332219399429219399361219399361Frame_Shift_DelA-p.L250fs
LIHCTCGA-DD-A3A0-01exon_skip_346773
219399332219399429219399373219399373Frame_Shift_DelT-p.K246fs
LIHCTCGA-DD-A3A0-01exon_skip_346773
219399332219399429219399405219399405Frame_Shift_DelG-p.P235fs
LIHCTCGA-DD-A3A0-01exon_skip_346775
219414532219414632219414587219414587Frame_Shift_DelC-p.G125fs
LIHCTCGA-CC-5260-01exon_skip_346778
219423221219423400219423315219423315Frame_Shift_DelT-p.K21fs
LIHCTCGA-CC-5260-01exon_skip_346780
219423221219423440219423315219423315Frame_Shift_DelT-p.K21fs
LIHCTCGA-DD-A1EG-01exon_skip_346778
219423221219423400219423323219423323Frame_Shift_DelC-p.G18fs
LIHCTCGA-DD-A1EG-01exon_skip_346780
219423221219423440219423323219423323Frame_Shift_DelC-p.G18fs
LIHCTCGA-DD-AAW2-01exon_skip_346763
219330733219330899219330793219330794Frame_Shift_Ins-Ap.M802fs
ESCATCGA-Z6-A8JE-01exon_skip_346766
219344373219344438219344376219344376Nonsense_MutationGTp.S633X
LIHCTCGA-2Y-A9H2-01exon_skip_346769
219374702219374863219374706219374706Nonsense_MutationGAp.Q341X
PAADTCGA-IB-7651-01exon_skip_346769
219374702219374863219374752219374752Nonsense_MutationCTp.W325*
PAADTCGA-IB-7651-01exon_skip_346769
219374702219374863219374752219374752Nonsense_MutationCTp.W325X
BLCATCGA-XF-A9SZ-01exon_skip_346775
219414532219414632219414542219414542Nonsense_MutationGCp.S140*
CESCTCGA-C5-A1BM-01exon_skip_346760
219321815219321884219321885219321885Splice_SiteCTe21-1
CESCTCGA-IR-A3LH-01exon_skip_346763
219330733219330899219330900219330900Splice_SiteCAe18-1

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
BICR18_UPPER_AERODIGESTIVE_TRACT219330733219330899219330793219330794Frame_Shift_DelCA-p.M802fs
RCK8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE219330733219330899219330819219330819Frame_Shift_DelC-p.V794fs
BICR18_UPPER_AERODIGESTIVE_TRACT219330733219330899219330796219330797Frame_Shift_Ins-CGp.D801fs
C2BBE1_LARGE_INTESTINE219320303219320441219320317219320317Missense_MutationGTp.F946L
CACO2_LARGE_INTESTINE219320303219320441219320317219320317Missense_MutationGTp.F946L
HEC1A_ENDOMETRIUM219321815219321884219321844219321844Missense_MutationATp.V895D
SNU719_STOMACH219324513219324628219324529219324529Missense_MutationACp.L876R
UACC62_SKIN219324513219324628219324561219324561Missense_MutationATp.D865E
8305C_THYROID219328029219328089219328061219328061Missense_MutationTCp.D832G
BICR18_UPPER_AERODIGESTIVE_TRACT219344373219344438219344383219344383Missense_MutationTCp.T631A
BICR18_UPPER_AERODIGESTIVE_TRACT219344373219344438219344418219344418Missense_MutationGCp.S619C
BICR18_UPPER_AERODIGESTIVE_TRACT219344373219344438219344424219344424Missense_MutationTCp.K617R
NO11_CENTRAL_NERVOUS_SYSTEM219353027219353144219353085219353085Missense_MutationCTp.R511H
MFE296_ENDOMETRIUM219353027219353144219353086219353086Missense_MutationGCp.R511G
NB6_AUTONOMIC_GANGLIA219374702219374863219374738219374738Missense_MutationACp.V330G
NCIBL2126_MATCHED_NORMAL_TISSUE219374702219374863219374738219374738Missense_MutationACp.V330G
NCIH2126_LUNG219374702219374863219374738219374738Missense_MutationACp.V330G
SAOS2_BONE219374702219374863219374762219374762Missense_MutationTAp.Y322F
KYSE270_OESOPHAGUS219399332219399429219399347219399347Missense_MutationCGp.E255Q
NCIH1299_LUNG219399332219399429219399364219399364Missense_MutationCTp.S249N
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE219414532219414632219414548219414548Missense_MutationGAp.S138F
NCIH1734_LUNG219414532219414632219414614219414614Missense_MutationCTp.G116E
HT115_LARGE_INTESTINE219423221219423440219423256219423256Missense_MutationGTp.H41N
HT115_LARGE_INTESTINE219423221219423400219423256219423256Missense_MutationGTp.H41N
ISTMEL1_SKIN219423221219423440219423351219423351Missense_MutationGAp.P9L
ISTMEL1_SKIN219423221219423400219423351219423351Missense_MutationGAp.P9L
MCF7_BREAST219321815219321884219321881219321881Nonsense_MutationCAp.G883*
EN_ENDOMETRIUM219394679219394763219394749219394749Nonsense_MutationGAp.Q265*
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE219414532219414632219414555219414555Nonsense_MutationGAp.Q136*
HEC1A_ENDOMETRIUM219423221219423440219423340219423340Nonsense_MutationGAp.R13*
HEC1A_ENDOMETRIUM219423221219423400219423340219423340Nonsense_MutationGAp.R13*

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for USP37

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for USP37


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for USP37


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RelatedDrugs for USP37

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for USP37

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource