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Open reading frame (ORF) annotation in the exon skipping event | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Splicing Quantitative Trait Methylation (sQTM) in the skipped exon | |
Gene summary for PBK |
Gene summary |
Gene information | Gene symbol | PBK | Gene ID | 55872 |
Gene name | PDZ binding kinase | |
Synonyms | CT84|HEL164|Nori-3|SPK|TOPK | |
Cytomap | 8p21.1 | |
Type of gene | protein-coding | |
Description | lymphokine-activated killer T-cell-originated protein kinaseMAPKK-like protein kinaseT-LAK cell-originated protein kinasecancer/testis antigen 84epididymis luminal protein 164serine/threonine protein kinasespermatogenesis-related protein kinase | |
Modification date | 20180520 | |
UniProtAcc | Q96KB5 | |
Context | PubMed: PBK [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Exon skipping events across known transcript of Ensembl for PBK from UCSC genome browser |
Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for PBK |
Expression levels of gene isoforms across TCGA. |
Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for PBK |
Information of exkip skipping event in TCGA. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_488969 | 8 | 27679835:27680005:27680579:27680722:27685621:27685715 | 27680579:27680722 | ENSG00000168078.5 | ENST00000522944.1,ENST00000301905.4,ENST00000521226.1 |
PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for PBK |
Information of exkip skipping event in GTEx |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_488969 | 8 | 27679835:27680005:27680579:27680722:27685621:27685715 | 27680579:27680722 | ENSG00000168078.5 | ENST00000301905.4,ENST00000522944.1,ENST00000521226.1 |
PSI values of skipped exons in GTEx. |
* Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for PBK |
Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000301905 | 27680579 | 27680722 | Frame-shift |
Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000301905 | 27680579 | 27680722 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for PBK |
Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Lost protein functional features of individual exon skipping events in TCGA. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in GTEx. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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SNVs in the skipped exons for PBK |
- Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
- Differential PSIs between mutated versus non-mutated samples. |
- Non-synonymous mutations located in the skipped exons in TCGA. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
LIHC | TCGA-G3-A3CJ-01 | exon_skip_488969 | 27680580 | 27680722 | 27680609 | 27680609 | Frame_Shift_Del | A | - | p.L89fs |
- Depth of coverage in the three exons composing exon skipping event |
Depth of coverage in three exons | Mutation description |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
MERO25_LUNG | 27680580 | 27680722 | 27680636 | 27680637 | Frame_Shift_Del | TT | - | p.K80fs |
SNU1040_LARGE_INTESTINE | 27680580 | 27680722 | 27680681 | 27680681 | Frame_Shift_Del | T | - | p.K65fs |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for PBK |
sQTL information located at the skipped exons. |
Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for PBK |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for PBK |
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RelatedDrugs for PBK |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PBK |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
PBK | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |