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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for UBAP2

check button Gene summary
Gene informationGene symbol

UBAP2

Gene ID

55833

Gene nameubiquitin associated protein 2
SynonymsUBAP-2
Cytomap

9p13.3

Type of geneprotein-coding
Descriptionubiquitin-associated protein 2AD-012 protein
Modification date20180523
UniProtAcc

Q5T6F2

ContextPubMed: UBAP2 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for UBAP2 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for UBAP2

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for UBAP2

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_503330933927024:33927078:33927794:33927990:33932559:3393262633927794:33927990ENSG00000137073.16ENST00000539807.1,ENST00000379239.4,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503336933927849:33927990:33928369:33928610:33932559:3393262633928369:33928610ENSG00000137073.16ENST00000474372.1
exon_skip_503337933927849:33927990:33932559:33932626:33933487:3393362633932559:33932626ENSG00000137073.16ENST00000539807.1,ENST00000379239.4,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503339933927849:33927990:33933487:33933626:33935836:3393587633933487:33933626ENSG00000137073.16ENST00000418786.2,ENST00000488443.1
exon_skip_503347933932559:33932626:33933487:33933626:33935836:3393587633933487:33933626ENSG00000137073.16ENST00000539807.1,ENST00000379239.4,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503354933941646:33941860:33943417:33943587:33944362:3394463733943417:33943587ENSG00000137073.16ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503359933943417:33943587:33944362:33944637:33948371:3394858533944362:33944637ENSG00000137073.16ENST00000379225.1,ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503363933944512:33944637:33948371:33948585:33953282:3395347233948371:33948585ENSG00000137073.16ENST00000539807.1,ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503366933948379:33948585:33953282:33953472:33956076:3395614433953282:33953472ENSG00000137073.16ENST00000539807.1,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000421278.2,ENST00000449054.1,ENST00000360802.1
exon_skip_503367933948379:33948585:33953282:33953472:33960823:3396087633953282:33953472ENSG00000137073.16ENST00000462799.1,ENST00000379239.4
exon_skip_503375933953282:33953472:33956076:33956144:33960823:3396087633956076:33956144ENSG00000137073.16ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000421278.2,ENST00000449054.1,ENST00000360802.1
exon_skip_503378933953282:33953472:33956076:33956144:33998784:3399886233956076:33956144ENSG00000137073.16ENST00000539807.1
exon_skip_503383933956076:33956144:33960823:33960876:33971648:3397175233960823:33960876ENSG00000137073.16ENST00000421278.2
exon_skip_503385933960823:33960876:33963723:33963789:33971648:3397173533963723:33963789ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503387933960823:33960876:33963723:33963789:33986757:3398683533963723:33963789ENSG00000137073.16ENST00000379239.4,ENST00000418786.2,ENST00000412543.1
exon_skip_503389933960823:33960876:33971648:33971752:33973180:3397323533971648:33971752ENSG00000137073.16ENST00000421278.2
exon_skip_503392933963723:33963789:33971648:33971752:33973180:3397323533971648:33971752ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503395933973180:33973235:33986757:33986835:33988970:3398904133986757:33986835ENSG00000137073.16ENST00000379238.1,ENST00000421278.2,ENST00000449054.1,ENST00000360802.1
exon_skip_503397933988970:33989124:33996220:33996331:33998784:3399886233996220:33996331ENSG00000137073.16ENST00000379239.4,ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503400933996220:33996331:33998784:33998862:34017047:3401718733998784:33998862ENSG00000137073.16ENST00000418786.2,ENST00000412543.1,ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503402933998784:33998862:34011624:34011662:34017047:3401718734011624:34011662ENSG00000137073.16ENST00000459988.1,ENST00000539807.1
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENSG00000137073.16ENST00000480885.1,ENST00000449054.1
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENSG00000137073.16ENST00000418786.2,ENST00000412543.1,ENST00000360802.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for UBAP2

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_503330933927024:33927078:33927794:33927990:33932559:3393262633927794:33927990ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000539807.1
exon_skip_503336933927849:33927990:33928369:33928610:33932559:3393262633928369:33928610ENSG00000137073.16ENST00000474372.1
exon_skip_503337933927849:33927990:33932559:33932626:33933487:3393362633932559:33932626ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000539807.1
exon_skip_503339933927849:33927990:33933487:33933626:33935836:3393587633933487:33933626ENSG00000137073.16ENST00000488443.1,ENST00000418786.2
exon_skip_503347933932559:33932626:33933487:33933626:33935836:3393587633933487:33933626ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000539807.1
exon_skip_503354933941646:33941860:33943417:33943587:33944362:3394463733943417:33943587ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000539807.1,ENST00000418786.2,ENST00000379225.1
exon_skip_503359933943417:33943587:33944362:33944637:33948371:3394858533944362:33944637ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000539807.1,ENST00000418786.2,ENST00000379225.1
exon_skip_503363933944512:33944637:33948371:33948585:33953282:3395347233948371:33948585ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000539807.1,ENST00000418786.2,ENST00000412543.1
exon_skip_503366933948379:33948585:33953282:33953472:33956076:3395614433953282:33953472ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000539807.1,ENST00000418786.2,ENST00000412543.1,ENST00000421278.2
exon_skip_503367933948379:33948585:33953282:33953472:33960823:3396087633953282:33953472ENSG00000137073.16ENST00000379239.4,ENST00000462799.1
exon_skip_503375933953282:33953472:33956076:33956144:33960823:3396087633956076:33956144ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000418786.2,ENST00000412543.1,ENST00000421278.2
exon_skip_503378933953282:33953472:33956076:33956144:33998784:3399886233956076:33956144ENSG00000137073.16ENST00000539807.1
exon_skip_503383933956076:33956144:33960823:33960876:33971648:3397175233960823:33960876ENSG00000137073.16ENST00000421278.2
exon_skip_503385933960823:33960876:33963723:33963789:33971648:3397173533963723:33963789ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503387933960823:33960876:33963723:33963789:33986757:3398683533963723:33963789ENSG00000137073.16ENST00000379239.4,ENST00000418786.2,ENST00000412543.1
exon_skip_503389933960823:33960876:33971648:33971752:33973180:3397323533971648:33971752ENSG00000137073.16ENST00000421278.2
exon_skip_503392933963723:33963789:33971648:33971752:33973180:3397323533971648:33971752ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1
exon_skip_503395933973180:33973235:33986757:33986835:33988970:3398904133986757:33986835ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000421278.2
exon_skip_503397933988970:33989124:33996220:33996331:33998784:3399886233996220:33996331ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000379239.4,ENST00000418786.2,ENST00000412543.1
exon_skip_503400933996220:33996331:33998784:33998862:34017047:3401718733998784:33998862ENSG00000137073.16ENST00000379238.1,ENST00000449054.1,ENST00000360802.1,ENST00000418786.2,ENST00000412543.1
exon_skip_503402933998784:33998862:34011624:34011662:34017047:3401718734011624:34011662ENSG00000137073.16ENST00000539807.1,ENST00000459988.1
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENSG00000137073.16ENST00000449054.1,ENST00000480885.1
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENSG00000137073.16ENST00000360802.1,ENST00000418786.2,ENST00000412543.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for UBAP2

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000036080234017047340171873UTR-3CDS
ENST000003608023392779433927990Frame-shift
ENST000003792383392779433927990Frame-shift
ENST000003608023393255933932626Frame-shift
ENST000003792383393255933932626Frame-shift
ENST000003608023393348733933626Frame-shift
ENST000003792383393348733933626Frame-shift
ENST000003608023394341733943587Frame-shift
ENST000003792383394341733943587Frame-shift
ENST000003608023394436233944637Frame-shift
ENST000003792383394436233944637Frame-shift
ENST000003608023394837133948585Frame-shift
ENST000003792383394837133948585Frame-shift
ENST000003608023395328233953472Frame-shift
ENST000003792383395328233953472Frame-shift
ENST000003608023395607633956144Frame-shift
ENST000003792383395607633956144Frame-shift
ENST000003608023397164833971752Frame-shift
ENST000003792383397164833971752Frame-shift
ENST000003608023396372333963789In-frame
ENST000003792383396372333963789In-frame
ENST000003608023398675733986835In-frame
ENST000003792383398675733986835In-frame
ENST000003608023399622033996331In-frame
ENST000003792383399622033996331In-frame
ENST000003608023399878433998862In-frame
ENST000003792383399878433998862In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000036080234017047340171873UTR-3CDS
ENST000003608023392779433927990Frame-shift
ENST000003792383392779433927990Frame-shift
ENST000003608023393255933932626Frame-shift
ENST000003792383393255933932626Frame-shift
ENST000003608023393348733933626Frame-shift
ENST000003792383393348733933626Frame-shift
ENST000003608023394341733943587Frame-shift
ENST000003792383394341733943587Frame-shift
ENST000003608023394436233944637Frame-shift
ENST000003792383394436233944637Frame-shift
ENST000003608023394837133948585Frame-shift
ENST000003792383394837133948585Frame-shift
ENST000003608023395328233953472Frame-shift
ENST000003792383395328233953472Frame-shift
ENST000003608023395607633956144Frame-shift
ENST000003792383395607633956144Frame-shift
ENST000003608023397164833971752Frame-shift
ENST000003792383397164833971752Frame-shift
ENST000003608023396372333963789In-frame
ENST000003792383396372333963789In-frame
ENST000003608023398675733986835In-frame
ENST000003792383398675733986835In-frame
ENST000003608023399622033996331In-frame
ENST000003792383399622033996331In-frame
ENST000003608023399878433998862In-frame
ENST000003792383399878433998862In-frame

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Infer the effects of exon skipping event on protein functional features for UBAP2

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003608024301111933998784339988622132903359
ENST000003792384306111933998784339988622182953359
ENST000003608024301111933996220339963312914015996
ENST000003792384306111933996220339963312964065996
ENST00000360802430111193398675733986835556633147173
ENST00000379238430611193398675733986835561638147173
ENST00000360802430111193396372333963789793858226248
ENST00000379238430611193396372333963789798863226248

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003608024301111933998784339988622132903359
ENST000003792384306111933998784339988622182953359
ENST000003608024301111933996220339963312914015996
ENST000003792384306111933996220339963312964065996
ENST00000360802430111193398675733986835556633147173
ENST00000379238430611193398675733986835561638147173
ENST00000360802430111193396372333963789793858226248
ENST00000379238430611193396372333963789798863226248

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q5T6F233591761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F233591761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F2335911119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F2335911119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F233594892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F233594892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F259961761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F259961761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F2599611119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F2599611119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F259964892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F259964892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F21471731761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F21471731761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F214717311119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F214717311119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F2147173166166Modified residueNote=Omega-N-methylarginine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315
Q5T6F2147173166166Modified residueNote=Omega-N-methylarginine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315
Q5T6F22262481761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F22262481761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F222624811119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F222624811119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q5T6F233591761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F233591761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F2335911119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F2335911119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F233594892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F233594892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F259961761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F259961761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F2599611119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F2599611119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F259964892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F259964892DomainNote=UBA;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q5T6F21471731761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F21471731761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F214717311119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F214717311119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F2147173166166Modified residueNote=Omega-N-methylarginine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315
Q5T6F2147173166166Modified residueNote=Omega-N-methylarginine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:24129315;Dbxref=PMID:24129315
Q5T6F22262481761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F22262481761Alternative sequenceID=VSP_056073;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q5T6F222624811119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2
Q5T6F222624811119ChainID=PRO_0000270981;Note=Ubiquitin-associated protein 2


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SNVs in the skipped exons for UBAP2

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
UBAP2_ESCA_exon_skip_503330_psi_boxplot.png
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UBAP2_LIHC_exon_skip_503330_psi_boxplot.png
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check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A1EG-01exon_skip_503330
33927795339279903392784433927844Frame_Shift_DelG-p.P774fs
LIHCTCGA-G3-A3CJ-01exon_skip_503347
exon_skip_503339
33933488339336263393357433933574Frame_Shift_DelG-p.P674fs
HNSCTCGA-BA-A4IG-01exon_skip_503354
33943418339435873394355733943560Frame_Shift_DelAACC-p.GS525fs
LIHCTCGA-DD-A3A0-01exon_skip_503359
33944363339446373394451633944516Frame_Shift_DelT-p.K464fs
STADTCGA-CG-4442-01exon_skip_503363
33948372339485853394839133948397Frame_Shift_DelGGACTGG-p.Q416fs
LIHCTCGA-DD-A1EG-01exon_skip_503363
33948372339485853394853333948533Frame_Shift_DelT-p.N370fs
LIHCTCGA-G3-A3CJ-01exon_skip_503363
33948372339485853394854033948540Frame_Shift_DelT-p.M368fs
LIHCTCGA-DD-A3A0-01exon_skip_503397
33996221339963313399625733996257Frame_Shift_DelT-p.K84fs
LIHCTCGA-DD-A1EG-01exon_skip_503404
exon_skip_503405
34017048340171873401709934017099Frame_Shift_DelT-p.K16fs
LIHCTCGA-DD-A1EG-01exon_skip_503404
exon_skip_503405
34017048340171873401709934017099Frame_Shift_DelT-p.P17fs
ESCATCGA-Z6-AAPN-01exon_skip_503330
33927795339279903392792033927920Nonsense_MutationGCp.S749*
HNSCTCGA-P3-A5QF-01exon_skip_503347
exon_skip_503339
33933488339336263393349833933498Nonsense_MutationGAp.Q700*
THYMTCGA-ZB-A96F-01exon_skip_503354
33943418339435873394345233943452Nonsense_MutationGAp.Q561X
BRCATCGA-C8-A12P-01exon_skip_503359
33944363339446373394441933944419Nonsense_MutationGAp.Q497*
UCECTCGA-BS-A0UF-01exon_skip_503359
33944363339446373394451233944512Nonsense_MutationGAp.R466*
SKCMTCGA-ER-A42H-01exon_skip_503359
33944363339446373394458733944587Nonsense_MutationGAp.R441*
SKCMTCGA-ER-A42H-01exon_skip_503359
33944363339446373394458733944587Nonsense_MutationGAp.R441X
BLCATCGA-DK-A2I4-01exon_skip_503363
33948372339485853394838933948389Nonsense_MutationGTp.S418*
SKCMTCGA-ER-A19N-06exon_skip_503383
33960824339608763396085733960857Nonsense_MutationCTp.W11*
LIHCTCGA-UB-A7MB-01exon_skip_503366
exon_skip_503367
33953283339534723395347433953474Splice_SiteTC.
KIRPTCGA-B3-3926-01exon_skip_503383
33960824339608763396082333960823Splice_SiteCG.
COADTCGA-AY-6197-01exon_skip_503404
exon_skip_503405
34017048340171873401704634017046Splice_SiteAG.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
UBAP2_33927024_33927078_33927794_33927990_33932559_33932626_TCGA-DD-A1EG-01Sample: TCGA-DD-A1EG-01
Cancer type: LIHC
ESID: exon_skip_503405
Skipped exon start: 34017048
Skipped exon end: 34017187
Mutation start: 34017099
Mutation end: 34017099
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.P17fs
UBAP2_33927024_33927078_33927794_33927990_33932559_33932626_TCGA-DD-A1EG-01Sample: TCGA-DD-A1EG-01
Cancer type: LIHC
ESID: exon_skip_503330
Skipped exon start: 33927795
Skipped exon end: 33927990
Mutation start: 33927844
Mutation end: 33927844
Mutation type: Frame_Shift_Del
Reference seq: G
Mutation seq: -
AAchange: p.P774fs
UBAP2_33927024_33927078_33927794_33927990_33932559_33932626_TCGA-DD-A1EG-01Sample: TCGA-DD-A1EG-01
Cancer type: LIHC
ESID: exon_skip_503363
Skipped exon start: 33948372
Skipped exon end: 33948585
Mutation start: 33948533
Mutation end: 33948533
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.N370fs
UBAP2_33927024_33927078_33927794_33927990_33932559_33932626_TCGA-DD-A1EG-01Sample: TCGA-DD-A1EG-01
Cancer type: LIHC
ESID: exon_skip_503405
Skipped exon start: 34017048
Skipped exon end: 34017187
Mutation start: 34017099
Mutation end: 34017099
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.K16fs
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE33927795339279903392781333927813Frame_Shift_DelC-p.A785fs
RL952_ENDOMETRIUM33943418339435873394348933943490Frame_Shift_DelAG-p.S548fs
SKN_ENDOMETRIUM33927795339279903392779833927798Missense_MutationACp.S790A
SNUC5_LARGE_INTESTINE33927795339279903392782233927822Missense_MutationTCp.S782G
HEC6_ENDOMETRIUM33927795339279903392784233927842Missense_MutationGAp.A775V
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE33927795339279903392790433927904Missense_MutationTAp.Q679L
LS411N_LARGE_INTESTINE33927795339279903392791533927915Missense_MutationAGp.S751P
CP66EBV_MATCHED_NORMAL_TISSUE33927795339279903392793733927937Missense_MutationCTp.R668Q
CP66MEL_SKIN33927795339279903392793733927937Missense_MutationCTp.R668Q
HCT15_LARGE_INTESTINE33927795339279903392797233927972Missense_MutationCTp.A732T
COLO741_SKIN33932560339326263393256833932568Missense_MutationACp.S723A
PACADD137_PANCREAS33933488339336263393352233933522Missense_MutationCTp.D692N
MCC13_SKIN33933488339336263393352733933527Missense_MutationGAp.T690I
OSC20_UPPER_AERODIGESTIVE_TRACT33933488339336263393361233933612Missense_MutationCTp.G662S
KMRC2_KIDNEY33944363339446373394440133944401Missense_MutationTAp.I503F
MAC2A_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE33944363339446373394443333944433Missense_MutationGAp.S492F
K2_SKIN33944363339446373394452933944529Missense_MutationGAp.P460L
RCCER_KIDNEY33944363339446373394454733944547Missense_MutationGTp.P454H
NCIH1581_LUNG33948372339485853394840233948402Missense_MutationTCp.T414A
NCIH2077_LUNG33948372339485853394840233948402Missense_MutationTCp.T414A
EWS502_BONE33948372339485853394842333948423Missense_MutationATp.S407T
Y79_AUTONOMIC_GANGLIA33948372339485853394844933948449Missense_MutationCTp.S398N
MDAMB453_BREAST33953283339534723395341933953419Missense_MutationTGp.E307A
NCIH2087_LUNG33953283339534723395342233953422Missense_MutationGAp.S306L
SW48_LARGE_INTESTINE33960824339608763396085333960853Missense_MutationCTp.E257K
BICR18_UPPER_AERODIGESTIVE_TRACT33960824339608763396087233960872Missense_MutationAGp.L6P
NCIH2342_LUNG33998785339988623399882833998828Missense_MutationATp.I45N
ROS50_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE33944363339446373394458733944587Nonsense_MutationGAp.R441*
LS411N_LARGE_INTESTINE33996221339963313399632533996325Nonsense_MutationCAp.E62*
BICR18_UPPER_AERODIGESTIVE_TRACT33960824339608763396087533960875Splice_SiteCAp.G249G

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for UBAP2

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1CESCrs1785506chr9:34017106C/T7.89e-05
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1COADrs1785506chr9:34017106C/T2.57e-07
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1ESCArs1785506chr9:34017106C/T3.44e-08
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1BRCArs1785506chr9:34017106C/T2.29e-10
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1LGGrs1785506chr9:34017106C/T9.74e-06
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1KIRCrs1785506chr9:34017106C/T1.94e-05
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1LUADrs1785506chr9:34017106C/T2.34e-08
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1OVrs1785506chr9:34017106C/T3.48e-08
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1PRADrs1785506chr9:34017106C/T4.22e-06
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1SARCrs1785506chr9:34017106C/T9.00e-04
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1TGCTrs1785506chr9:34017106C/T2.22e-10
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1STADrs1785506chr9:34017106C/T4.29e-07
exon_skip_503404933998784:33998862:34017047:34017187:34048822:3404887034017047:34017187ENST00000480885.1,ENST00000449054.1THCArs1785506chr9:34017106C/T5.60e-06
exon_skip_503392933963723:33963789:33971648:33971752:33973180:3397323533971648:33971752ENST00000379238.1,ENST00000449054.1,ENST00000360802.1OVrs3739690chr9:33971740A/G1.54e-03
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1CESCrs1785506chr9:34017106C/T7.89e-05
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1COADrs1785506chr9:34017106C/T2.57e-07
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1ESCArs1785506chr9:34017106C/T3.44e-08
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1BRCArs1785506chr9:34017106C/T2.29e-10
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1LGGrs1785506chr9:34017106C/T9.74e-06
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1KIRCrs1785506chr9:34017106C/T1.94e-05
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1LUADrs1785506chr9:34017106C/T2.34e-08
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1OVrs1785506chr9:34017106C/T3.48e-08
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1PRADrs1785506chr9:34017106C/T4.22e-06
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1SARCrs1785506chr9:34017106C/T9.00e-04
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1TGCTrs1785506chr9:34017106C/T2.22e-10
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1STADrs1785506chr9:34017106C/T4.29e-07
exon_skip_503405933998784:33998862:34017047:34017187:34048875:3404892734017047:34017187ENST00000418786.2,ENST00000412543.1,ENST00000360802.1THCArs1785506chr9:34017106C/T5.60e-06
exon_skip_503389933960823:33960876:33971648:33971752:33973180:3397323533971648:33971752ENST00000421278.2OVrs3739690chr9:33971740A/G1.54e-03

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for UBAP2


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for UBAP2


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RelatedDrugs for UBAP2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for UBAP2

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
UBAP2C0001973Alcoholic Intoxication, Chronic1PSYGENET