ExonSkipDB: functional annotation of exon skipping event in human

Gene summary for LGALS3BP

Gene summary

Gene information	Gene symbol	LGALS3BP
	Gene ID	3959
	Gene name	galectin 3 binding protein
	Synonyms	90K\|BTBD17B\|CyCAP\|M2BP\|MAC-2-BP\|TANGO10B\|gp90
	Cytomap	17q25.3
	Type of gene	protein-coding
	Description	galectin-3-binding proteinL3 antigenMAC2BPMac-2-binding proteinbasement membrane autoantigen p105lectin galactoside-binding soluble 3-binding proteinmac-2 BPserum protein 90Ktransport and golgi organization 10 homolog Btumor-associated antigen 90
	Modification date	20180523
	UniProtAcc	Q08380
	Context	PubMed: LGALS3BP [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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Exon skipping events across known transcript of Ensembl for LGALS3BP from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Gene isoform structures and expression levels for LGALS3BP

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

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Exon skipping events with PSIs in TCGA for LGALS3BP

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_294064	17	76968638:76968786:76969051:76969304:76970769:76970854	76969051:76969304	ENSG00000108679.8	ENST00000589527.1,ENST00000588508.1,ENST00000587251.1,ENST00000262776.3
exon_skip_294067	17	76968638:76968786:76969051:76969425:76970769:76970854	76969051:76969425	ENSG00000108679.8	ENST00000588198.1
exon_skip_294070	17	76968638:76968786:76970769:76970901:76972046:76972238	76970769:76970901	ENSG00000108679.8	ENST00000591778.1
exon_skip_294080	17	76969269:76969304:76970769:76970901:76972046:76972238	76970769:76970901	ENSG00000108679.8	ENST00000589527.1,ENST00000588205.1,ENST00000589775.2,ENST00000587310.1,ENST00000262776.3,ENST00000585407.1
exon_skip_294081	17	76969269:76969304:76970769:76970901:76973221:76973296	76970769:76970901	ENSG00000108679.8	ENST00000589906.1
exon_skip_294084	17	76970879:76970901:76972046:76972238:76973221:76973296	76972046:76972238	ENSG00000108679.8	ENST00000591274.1,ENST00000589527.1,ENST00000589775.2,ENST00000591778.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1
exon_skip_294086	17	76970879:76970901:76973221:76973296:76975905:76975925	76973221:76973296	ENSG00000108679.8	ENST00000589906.1
exon_skip_294087	17	76972220:76972238:76973024:76973082:76973221:76973296	76973024:76973082	ENSG00000108679.8	ENST00000588990.1,ENST00000587310.1
exon_skip_294088	17	76972163:76972238:76973076:76973296:76975905:76975925	76973076:76973296	ENSG00000108679.8	ENST00000588899.1
exon_skip_294089	17	76972163:76972238:76973221:76973296:76975905:76975925	76973221:76973296	ENSG00000108679.8	ENST00000587251.1,ENST00000587311.1,ENST00000262776.3,ENST00000585407.1,ENST00000588198.1
exon_skip_294091	17	76973221:76973296:76973485:76973555:76975905:76975925	76973485:76973555	ENSG00000108679.8	ENST00000591274.1
exon_skip_294097	17	76973221:76973296:76975527:76975668:76975905:76975925	76975527:76975668	ENSG00000108679.8	ENST00000589775.2

PSI values of skipped exons in TCGA.

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Exon skipping events with PSIs in GTEx for LGALS3BP

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_294064	17	76968638:76968786:76969051:76969304:76970769:76970854	76969051:76969304	ENSG00000108679.8	ENST00000262776.3,ENST00000587251.1,ENST00000588508.1,ENST00000589527.1
exon_skip_294067	17	76968638:76968786:76969051:76969425:76970769:76970854	76969051:76969425	ENSG00000108679.8	ENST00000588198.1
exon_skip_294080	17	76969269:76969304:76970769:76970901:76972046:76972238	76970769:76970901	ENSG00000108679.8	ENST00000262776.3,ENST00000589527.1,ENST00000585407.1,ENST00000589775.2,ENST00000587310.1,ENST00000588205.1
exon_skip_294084	17	76970879:76970901:76972046:76972238:76973221:76973296	76972046:76972238	ENSG00000108679.8	ENST00000591778.1,ENST00000262776.3,ENST00000588198.1,ENST00000589527.1,ENST00000585407.1,ENST00000589775.2,ENST00000591274.1
exon_skip_294086	17	76970879:76970901:76973221:76973296:76975905:76975925	76973221:76973296	ENSG00000108679.8	ENST00000589906.1
exon_skip_294087	17	76972220:76972238:76973024:76973082:76973221:76973296	76973024:76973082	ENSG00000108679.8	ENST00000587310.1,ENST00000588990.1
exon_skip_294088	17	76972163:76972238:76973076:76973296:76975905:76975925	76973076:76973296	ENSG00000108679.8	ENST00000588899.1
exon_skip_294089	17	76972163:76972238:76973221:76973296:76975905:76975925	76973221:76973296	ENSG00000108679.8	ENST00000262776.3,ENST00000587311.1,ENST00000587251.1,ENST00000588198.1,ENST00000585407.1
exon_skip_294091	17	76973221:76973296:76973485:76973555:76975905:76975925	76973485:76973555	ENSG00000108679.8	ENST00000591274.1
exon_skip_294097	17	76973221:76973296:76975527:76975668:76975905:76975925	76975527:76975668	ENSG00000108679.8	ENST00000589775.2

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for LGALS3BP

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000262776	76973221	76973296	3UTR-3CDS
ENST00000262776	76969051	76969304	Frame-shift
ENST00000262776	76970769	76970901	In-frame
ENST00000262776	76972046	76972238	In-frame

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000262776	76973221	76973296	3UTR-3CDS
ENST00000262776	76969051	76969304	Frame-shift
ENST00000262776	76970769	76970901	In-frame
ENST00000262776	76972046	76972238	In-frame

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Infer the effects of exon skipping event on protein functional features for LGALS3BP

Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000262776	2422	585	76972046	76972238	362	553	17	81
ENST00000262776	2422	585	76970769	76970901	554	685	81	125

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000262776	2422	585	76972046	76972238	362	553	17	81
ENST00000262776	2422	585	76970769	76970901	554	685	81	125

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
Q08380	17	81	24	28	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	34	41	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	44	49	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	70	74	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	19	585	Chain	ID=PRO_0000033230;Note=Galectin-3-binding protein
Q08380	17	81	49	113	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	17	81	62	123	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	17	81	24	124	Domain	Note=SRCR;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00196
Q08380	17	81	69	69	Glycosylation	Note=N-linked (GlcNAc...) (complex) asparagine;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269\|PubMed:15084671,ECO:0000269\|PubMed:16335952,ECO:0000269\|PubMed:16740002,ECO:0000269\|PubMe
Q08380	17	81	55	64	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	19	19	Sequence conflict	Note=V->S;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	25	25	Sequence conflict	Note=R->C;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	25	25	Sequence conflict	Note=R->P;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	26	26	Sequence conflict	Note=L->M;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	30	31	Sequence conflict	Note=GA->ED;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	36	36	Sequence conflict	Note=R->H;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	36	36	Sequence conflict	Note=R->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	1	18	Signal peptide	Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269\|PubMed:8390986,ECO:0000269\|PubMed:8454062,ECO:0000269\|PubMed:8757764;Dbxref=PMID:8390986,PMID:8454062,PMID:8757764
Q08380	17	81	76	79	Turn	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	86	88	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	120	123	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	19	585	Chain	ID=PRO_0000033230;Note=Galectin-3-binding protein
Q08380	81	125	49	113	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	81	125	62	123	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	81	125	93	103	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	81	125	24	124	Domain	Note=SRCR;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00196
Q08380	81	125	125	125	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269\|PubMed:16335952,ECO:0000269\|PubMed:19159218;Dbxref=PMID:16335952,PMID:19159218
Q08380	81	125	100	102	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	115	117	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
Q08380	17	81	24	28	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	34	41	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	44	49	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	70	74	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	19	585	Chain	ID=PRO_0000033230;Note=Galectin-3-binding protein
Q08380	17	81	49	113	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	17	81	62	123	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	17	81	24	124	Domain	Note=SRCR;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00196
Q08380	17	81	69	69	Glycosylation	Note=N-linked (GlcNAc...) (complex) asparagine;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269\|PubMed:15084671,ECO:0000269\|PubMed:16335952,ECO:0000269\|PubMed:16740002,ECO:0000269\|PubMe
Q08380	17	81	55	64	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	17	81	19	19	Sequence conflict	Note=V->S;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	25	25	Sequence conflict	Note=R->C;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	25	25	Sequence conflict	Note=R->P;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	26	26	Sequence conflict	Note=L->M;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	30	31	Sequence conflict	Note=GA->ED;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	36	36	Sequence conflict	Note=R->H;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	36	36	Sequence conflict	Note=R->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q08380	17	81	1	18	Signal peptide	Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269\|PubMed:8390986,ECO:0000269\|PubMed:8454062,ECO:0000269\|PubMed:8757764;Dbxref=PMID:8390986,PMID:8454062,PMID:8757764
Q08380	17	81	76	79	Turn	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	86	88	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	120	123	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	19	585	Chain	ID=PRO_0000033230;Note=Galectin-3-binding protein
Q08380	81	125	49	113	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	81	125	62	123	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	81	125	93	103	Disulfide bond	Ontology_term=ECO:0000244,ECO:0000269;evidence=ECO:0000244\|PDB:1BY2,ECO:0000269\|PubMed:9501082;Dbxref=PMID:9501082
Q08380	81	125	24	124	Domain	Note=SRCR;Ontology_term=ECO:0000255;evidence=ECO:0000255\|PROSITE-ProRule:PRU00196
Q08380	81	125	125	125	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269\|PubMed:16335952,ECO:0000269\|PubMed:19159218;Dbxref=PMID:16335952,PMID:19159218
Q08380	81	125	100	102	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2
Q08380	81	125	115	117	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244\|PDB:1BY2

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SNVs in the skipped exons for LGALS3BP

- Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

LGALS3BP_LIHC_exon_skip_294064_psi_boxplot.png
boxplot

LGALS3BP_LIHC_exon_skip_294067_psi_boxplot.png
boxplot

LGALS3BP_LIHC_exon_skip_294084_psi_boxplot.png
boxplot

LGALS3BP_LUAD_exon_skip_294084_psi_boxplot.png
boxplot

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
LIHC	TCGA-DD-A39Y-01	exon_skip_294064	76969052	76969304	76969167	76969167	Frame_Shift_Del	G	-	p.H172fs
LIHC	TCGA-DD-A39Y-01	exon_skip_294067	76969052	76969425	76969167	76969167	Frame_Shift_Del	G	-	p.H172fs
LIHC	TCGA-DD-A1EG-01	exon_skip_294084	76972047	76972238	76972131	76972131	Frame_Shift_Del	C	-	p.D54fs
STAD	TCGA-CD-A486-01	exon_skip_294084	76972047	76972238	76972185	76972185	Frame_Shift_Del	G	-	p.R36fs
LIHC	TCGA-DD-A1EG-01	exon_skip_294084	76972047	76972238	76972202	76972202	Frame_Shift_Del	C	-	p.G30fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_294084	76972047	76972238	76972202	76972202	Frame_Shift_Del	C	-	p.G30fs
CESC	TCGA-IR-A3LI-01	exon_skip_294080 exon_skip_294081 exon_skip_294070	76970770	76970901	76970878	76970878	Nonsense_Mutation	C	A	p.E90*
LUAD	TCGA-95-7567-01	exon_skip_294084	76972047	76972238	76972045	76972045	Splice_Site	A	T	p.G82_splice

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons	Mutation description
	Sample: TCGA-95-7567-01
	Cancer type: LUAD
	ESID: exon_skip_294084
	Skipped exon start: 76972047
	Skipped exon end: 76972238
	Mutation start: 76972045
	Mutation end: 76972045
	Mutation type: Splice_Site
	Reference seq: A
	Mutation seq: T
	AAchange: p.G82_splice
exon_skip_294084_LUAD_TCGA-95-7567-01.png
exon_skip_344952_LUAD_TCGA-95-7567-01.png
exon_skip_48473_LUAD_TCGA-95-7567-01.png
exon_skip_54935_LUAD_TCGA-95-7567-01.png
	Sample: TCGA-DD-A39Y-01
	Cancer type: LIHC
	ESID: exon_skip_294064
	Skipped exon start: 76969052
	Skipped exon end: 76969304
	Mutation start: 76969167
	Mutation end: 76969167
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.H172fs
	Sample: TCGA-DD-A39Y-01
	Cancer type: LIHC
	ESID: exon_skip_294067
	Skipped exon start: 76969052
	Skipped exon end: 76969425
	Mutation start: 76969167
	Mutation end: 76969167
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.H172fs
exon_skip_105023_LIHC_TCGA-DD-A39Y-01.png
exon_skip_101824_LIHC_TCGA-DD-A39Y-01.png
exon_skip_106032_LIHC_TCGA-DD-A39Y-01.png
exon_skip_106378_LIHC_TCGA-DD-A39Y-01.png
exon_skip_106523_LIHC_TCGA-DD-A39Y-01.png
exon_skip_106524_LIHC_TCGA-DD-A39Y-01.png
exon_skip_109527_LIHC_TCGA-DD-A39Y-01.png
exon_skip_109529_LIHC_TCGA-DD-A39Y-01.png
exon_skip_110000_LIHC_TCGA-DD-A39Y-01.png
exon_skip_11029_LIHC_TCGA-DD-A39Y-01.png
exon_skip_111893_LIHC_TCGA-DD-A39Y-01.png
exon_skip_111894_LIHC_TCGA-DD-A39Y-01.png
exon_skip_112042_LIHC_TCGA-DD-A39Y-01.png
exon_skip_112647_LIHC_TCGA-DD-A39Y-01.png
exon_skip_114045_LIHC_TCGA-DD-A39Y-01.png
exon_skip_114046_LIHC_TCGA-DD-A39Y-01.png
exon_skip_114565_LIHC_TCGA-DD-A39Y-01.png
exon_skip_11916_LIHC_TCGA-DD-A39Y-01.png
exon_skip_1234_LIHC_TCGA-DD-A39Y-01.png
exon_skip_1237_LIHC_TCGA-DD-A39Y-01.png
exon_skip_124639_LIHC_TCGA-DD-A39Y-01.png
exon_skip_124693_LIHC_TCGA-DD-A39Y-01.png
exon_skip_124695_LIHC_TCGA-DD-A39Y-01.png
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	Sample: TCGA-DD-A39Y-01
	Cancer type: LIHC
	ESID: exon_skip_294064
	Skipped exon start: 76969052
	Skipped exon end: 76969304
	Mutation start: 76969167
	Mutation end: 76969167
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.H172fs
	Sample: TCGA-DD-A39Y-01
	Cancer type: LIHC
	ESID: exon_skip_294067
	Skipped exon start: 76969052
	Skipped exon end: 76969425
	Mutation start: 76969167
	Mutation end: 76969167
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.H172fs
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- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
MEWO_SKIN	76969052	76969304	76969129	76969130	Missense_Mutation	GG	AA	p.A184V
MEWO_SKIN	76969052	76969425	76969129	76969130	Missense_Mutation	GG	AA	p.A184V
MEWO_SKIN	76969052	76969304	76969130	76969130	Missense_Mutation	G	A	p.A184V
MEWO_SKIN	76969052	76969425	76969130	76969130	Missense_Mutation	G	A	p.A184V
NCIH748_LUNG	76969052	76969304	76969287	76969287	Missense_Mutation	T	G	p.T132P
NCIH748_LUNG	76969052	76969425	76969287	76969287	Missense_Mutation	T	G	p.T132P
SF172_CENTRAL_NERVOUS_SYSTEM	76970770	76970901	76970893	76970893	Missense_Mutation	G	T	p.P85T
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	76972047	76972238	76972115	76972115	Missense_Mutation	C	G	p.S59T
RL952_ENDOMETRIUM	76972047	76972238	76972185	76972185	Missense_Mutation	G	A	p.R36C
LOVO_LARGE_INTESTINE	76973222	76973296	76973227	76973227	Missense_Mutation	G	C	p.T16S
LOVO_LARGE_INTESTINE	76973077	76973296	76973227	76973227	Missense_Mutation	G	C	p.T16S
KYSE140_OESOPHAGUS	76973222	76973296	76973258	76973258	Missense_Mutation	G	A	p.L6F
KYSE140_OESOPHAGUS	76973077	76973296	76973258	76973258	Missense_Mutation	G	A	p.L6F
NCIH2227_LUNG	76973222	76973296	76973264	76973264	Missense_Mutation	G	A	p.P4S
NCIH2227_LUNG	76973077	76973296	76973264	76973264	Missense_Mutation	G	A	p.P4S

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for LGALS3BP

sQTL information located at the skipped exons.

Exon skip ID

Chromosome

Three exons

Skippped exon

ENST

Cancer type

SNP id

Location

DNA change (ref/var)

P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for LGALS3BP

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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for LGALS3BP

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RelatedDrugs for LGALS3BP

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LGALS3BP

Diseases associated with this gene.
(DisGeNet 4.0)

Gene	Disease ID	Disease name	# pubmeds	Source
LGALS3BP	C0023890	Liver Cirrhosis	1	CTD_human

	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

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