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| Open reading frame (ORF) annotation in the exon skipping event |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for SLC35B2 |
 Gene summary |
| Gene information | Gene symbol | SLC35B2 | Gene ID | 347734 |
| Gene name | solute carrier family 35 member B2 | |
| Synonyms | PAPST1|SLL|UGTrel4 | |
| Cytomap | 6p21.1 | |
| Type of gene | protein-coding | |
| Description | adenosine 3'-phospho 5'-phosphosulfate transporter 13'-phosphoadenosine 5'-phosphosulfate transporterPAPS transporter 1putative MAPK-activating protein PM15putative NF-kappa-B-activating protein 48solute carrier family 35 (adenosine 3'-phospho 5'-pho | |
| Modification date | 20180523 | |
| UniProtAcc | Q8TB61 | |
| Context | PubMed: SLC35B2 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| SLC35B2 | GO:0046963 | 3'-phosphoadenosine 5'-phosphosulfate transport | 12716889 |
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Exon skipping events across known transcript of Ensembl for SLC35B2 from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for SLC35B2 |
| Expression levels of gene isoforms across TCGA. |
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| Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for SLC35B2 |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_459841 | 6 | 44223305:44223381:44224078:44224233:44224421:44224615 | 44224078:44224233 | ENSG00000157593.12 | ENST00000393812.3 |
| exon_skip_459846 | 6 | 44223305:44223381:44224421:44224615:44225136:44225265 | 44224421:44224615 | ENSG00000157593.12 | ENST00000393810.1,ENST00000538577.1 |
| exon_skip_459855 | 6 | 44224078:44224233:44224421:44224615:44225136:44225265 | 44224421:44224615 | ENSG00000157593.12 | ENST00000393812.3 |
| PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for SLC35B2 |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_459841 | 6 | 44223305:44223381:44224078:44224233:44224421:44224615 | 44224078:44224233 | ENSG00000157593.12 | ENST00000393812.3 |
| exon_skip_459846 | 6 | 44223305:44223381:44224421:44224615:44225136:44225265 | 44224421:44224615 | ENSG00000157593.12 | ENST00000393810.1,ENST00000538577.1 |
| exon_skip_459855 | 6 | 44224078:44224233:44224421:44224615:44225136:44225265 | 44224421:44224615 | ENSG00000157593.12 | ENST00000393812.3 |
| PSI values of skipped exons in GTEx. |
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| * Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for SLC35B2 |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000393812 | 44224078 | 44224233 | Frame-shift |
| ENST00000393812 | 44224421 | 44224615 | Frame-shift |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000393812 | 44224078 | 44224233 | Frame-shift |
| ENST00000393812 | 44224421 | 44224615 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for SLC35B2 |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
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| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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SNVs in the skipped exons for SLC35B2 |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
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| - Differential PSIs between mutated versus non-mutated samples. |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| PCPG | TCGA-RM-A68W-01 | exon_skip_459846 exon_skip_459855 | 44224422 | 44224615 | 44224447 | 44224447 | Frame_Shift_Del | G | - | p.F60fs |
| SKCM | TCGA-FR-A726-01 | exon_skip_459846 exon_skip_459855 | 44224422 | 44224615 | 44224515 | 44224515 | Nonsense_Mutation | G | A | p.R38* |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 44224422 | 44224615 | 44224487 | 44224487 | Missense_Mutation | G | A | p.A47V |
| HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 44224422 | 44224615 | 44224577 | 44224577 | Missense_Mutation | A | G | p.L17P |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for SLC35B2 |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for SLC35B2 |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for SLC35B2 |
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RelatedDrugs for SLC35B2 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC35B2 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
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