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| Open reading frame (ORF) annotation in the exon skipping event |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for STRN4 |
 Gene summary |
| Gene information | Gene symbol | STRN4 | Gene ID | 29888 |
| Gene name | striatin 4 | |
| Synonyms | PPP2R6C|ZIN|zinedin | |
| Cytomap | 19q13.32 | |
| Type of gene | protein-coding | |
| Description | striatin-4protein phosphatase 2 regulatory subunit B'''gammastriatin, calmodulin binding protein 4 | |
| Modification date | 20180523 | |
| UniProtAcc | Q9NRL3 | |
| Context | PubMed: STRN4 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Exon skipping events across known transcript of Ensembl for STRN4 from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for STRN4 |
| Expression levels of gene isoforms across TCGA. |
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| Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for STRN4 |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_319801 | 19 | 47223955:47224028:47225242:47225329:47225498:47225597 | 47225242:47225329 | ENSG00000090372.10 | ENST00000600615.1,ENST00000263280.6,ENST00000391910.3,ENST00000539396.1 |
| exon_skip_319807 | 19 | 47225594:47225597:47226066:47226207:47226370:47226468 | 47226066:47226207 | ENSG00000090372.10 | ENST00000594287.2,ENST00000595357.1,ENST00000600615.1,ENST00000263280.6,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1 |
| exon_skip_319811 | 19 | 47226190:47226207:47226370:47226541:47228063:47228149 | 47226370:47226541 | ENSG00000090372.10 | ENST00000594287.2,ENST00000595357.1,ENST00000601631.2,ENST00000263280.6,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1,ENST00000594357.2 |
| exon_skip_319812 | 19 | 47228084:47228185:47228588:47228636:47228729:47228889 | 47228588:47228636 | ENSG00000090372.10 | ENST00000594287.2,ENST00000595357.1,ENST00000601631.2,ENST00000263280.6,ENST00000600358.3,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1,ENST00000594357.2 |
| exon_skip_319814 | 19 | 47228737:47228905:47230708:47230803:47231150:47231216 | 47230708:47230803 | ENSG00000090372.10 | ENST00000601631.2,ENST00000263280.6,ENST00000539396.1,ENST00000594357.2 |
| exon_skip_319815 | 19 | 47228737:47228905:47230708:47230824:47231150:47231216 | 47230708:47230824 | ENSG00000090372.10 | ENST00000595357.1,ENST00000435164.2,ENST00000391910.3 |
| exon_skip_319816 | 19 | 47228737:47228905:47230708:47230948:47231150:47231216 | 47230708:47230948 | ENSG00000090372.10 | ENST00000600358.3,ENST00000602223.1 |
| exon_skip_319818 | 19 | 47231163:47231264:47231874:47232034:47233988:47234114 | 47231874:47232034 | ENSG00000090372.10 | ENST00000595357.1,ENST00000594847.2,ENST00000263280.6,ENST00000600358.3,ENST00000391910.3,ENST00000599231.1,ENST00000539396.1 |
| exon_skip_319820 | 19 | 47231150:47231383:47231874:47232034:47233988:47234114 | 47231874:47232034 | ENSG00000090372.10 | ENST00000435164.2 |
| exon_skip_319822 | 19 | 47234092:47234130:47236295:47236493:47240079:47240158 | 47236295:47236493 | ENSG00000090372.10 | ENST00000263280.6,ENST00000600358.3,ENST00000435164.2,ENST00000391910.3,ENST00000593979.2,ENST00000539396.1 |
| exon_skip_319830 | 19 | 47236456:47236493:47237072:47237132:47240079:47240158 | 47237072:47237132 | ENSG00000090372.10 | ENST00000594704.1 |
| exon_skip_319832 | 19 | 47236456:47236493:47240079:47240158:47241420:47241429 | 47240079:47240158 | ENSG00000090372.10 | ENST00000597021.2,ENST00000597063.2,ENST00000263280.6,ENST00000600358.3,ENST00000435164.2,ENST00000596012.2,ENST00000391910.3,ENST00000593979.2,ENST00000539396.1 |
| exon_skip_319846 | 19 | 47242041:47242145:47249405:47249468:47250020:47250201 | 47249405:47249468 | ENSG00000090372.10 | ENST00000600710.1,ENST00000539396.1 |
| PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for STRN4 |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_319801 | 19 | 47223955:47224028:47225242:47225329:47225498:47225597 | 47225242:47225329 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000539396.1,ENST00000600615.1 |
| exon_skip_319807 | 19 | 47225594:47225597:47226066:47226207:47226370:47226468 | 47226066:47226207 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1,ENST00000600615.1,ENST00000595357.1,ENST00000594287.2 |
| exon_skip_319811 | 19 | 47226190:47226207:47226370:47226541:47228063:47228149 | 47226370:47226541 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1,ENST00000595357.1,ENST00000594287.2,ENST00000601631.2,ENST00000594357.2 |
| exon_skip_319812 | 19 | 47228084:47228185:47228588:47228636:47228729:47228889 | 47228588:47228636 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000594581.1,ENST00000539396.1,ENST00000595357.1,ENST00000594287.2,ENST00000601631.2,ENST00000594357.2,ENST00000600358.3 |
| exon_skip_319814 | 19 | 47228737:47228905:47230708:47230803:47231150:47231216 | 47230708:47230803 | ENSG00000090372.10 | ENST00000263280.6,ENST00000539396.1,ENST00000601631.2,ENST00000594357.2 |
| exon_skip_319815 | 19 | 47228737:47228905:47230708:47230824:47231150:47231216 | 47230708:47230824 | ENSG00000090372.10 | ENST00000391910.3,ENST00000595357.1,ENST00000435164.2 |
| exon_skip_319816 | 19 | 47228737:47228905:47230708:47230948:47231150:47231216 | 47230708:47230948 | ENSG00000090372.10 | ENST00000600358.3,ENST00000602223.1 |
| exon_skip_319818 | 19 | 47231163:47231264:47231874:47232034:47233988:47234114 | 47231874:47232034 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000539396.1,ENST00000595357.1,ENST00000600358.3,ENST00000599231.1,ENST00000594847.2 |
| exon_skip_319820 | 19 | 47231150:47231383:47231874:47232034:47233988:47234114 | 47231874:47232034 | ENSG00000090372.10 | ENST00000435164.2 |
| exon_skip_319822 | 19 | 47234092:47234130:47236295:47236493:47240079:47240158 | 47236295:47236493 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000539396.1,ENST00000600358.3,ENST00000435164.2,ENST00000593979.2 |
| exon_skip_319830 | 19 | 47236456:47236493:47237072:47237132:47240079:47240158 | 47237072:47237132 | ENSG00000090372.10 | ENST00000594704.1 |
| exon_skip_319832 | 19 | 47236456:47236493:47240079:47240158:47241420:47241429 | 47240079:47240158 | ENSG00000090372.10 | ENST00000263280.6,ENST00000391910.3,ENST00000539396.1,ENST00000600358.3,ENST00000435164.2,ENST00000593979.2,ENST00000597063.2,ENST00000597021.2,ENST00000596012.2 |
| exon_skip_319844 | 19 | 47242041:47242145:47243420:47243542:47250020:47250120 | 47243420:47243542 | ENSG00000090372.10 | ENST00000435164.2 |
| exon_skip_319846 | 19 | 47242041:47242145:47249405:47249468:47250020:47250201 | 47249405:47249468 | ENSG00000090372.10 | ENST00000539396.1,ENST00000600710.1 |
| PSI values of skipped exons in GTEx. |
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| * Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for STRN4 |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000263280 | 47230708 | 47230803 | Frame-shift |
| ENST00000263280 | 47231874 | 47232034 | Frame-shift |
| ENST00000263280 | 47240079 | 47240158 | Frame-shift |
| ENST00000263280 | 47225242 | 47225329 | In-frame |
| ENST00000263280 | 47226066 | 47226207 | In-frame |
| ENST00000263280 | 47226370 | 47226541 | In-frame |
| ENST00000263280 | 47228588 | 47228636 | In-frame |
| ENST00000263280 | 47236295 | 47236493 | In-frame |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000263280 | 47230708 | 47230803 | Frame-shift |
| ENST00000263280 | 47231874 | 47232034 | Frame-shift |
| ENST00000263280 | 47240079 | 47240158 | Frame-shift |
| ENST00000263280 | 47225242 | 47225329 | In-frame |
| ENST00000263280 | 47226066 | 47226207 | In-frame |
| ENST00000263280 | 47226370 | 47226541 | In-frame |
| ENST00000263280 | 47228588 | 47228636 | In-frame |
| ENST00000263280 | 47236295 | 47236493 | In-frame |
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Infer the effects of exon skipping event on protein functional features for STRN4 |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
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| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000263280 | 3227 | 753 | 47236295 | 47236493 | 590 | 787 | 180 | 245 |
| ENST00000263280 | 3227 | 753 | 47228588 | 47228636 | 1475 | 1522 | 475 | 490 |
| ENST00000263280 | 3227 | 753 | 47226370 | 47226541 | 1645 | 1815 | 531 | 588 |
| ENST00000263280 | 3227 | 753 | 47226066 | 47226207 | 1816 | 1956 | 588 | 635 |
| ENST00000263280 | 3227 | 753 | 47225242 | 47225329 | 2056 | 2142 | 668 | 697 |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000263280 | 3227 | 753 | 47236295 | 47236493 | 590 | 787 | 180 | 245 |
| ENST00000263280 | 3227 | 753 | 47228588 | 47228636 | 1475 | 1522 | 475 | 490 |
| ENST00000263280 | 3227 | 753 | 47226370 | 47226541 | 1645 | 1815 | 531 | 588 |
| ENST00000263280 | 3227 | 753 | 47226066 | 47226207 | 1816 | 1956 | 588 | 635 |
| ENST00000263280 | 3227 | 753 | 47225242 | 47225329 | 2056 | 2142 | 668 | 697 |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q9NRL3 | 180 | 245 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 180 | 245 | 206 | 206 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:19690332,PMID:20068231,PMID:23186163 |
| Q9NRL3 | 180 | 245 | 165 | 182 | Region | Note=Calmodulin-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9NRL3 | 475 | 490 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 475 | 490 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 475 | 490 | 436 | 475 | Repeat | Note=WD 1 |
| Q9NRL3 | 475 | 490 | 489 | 528 | Repeat | Note=WD 2 |
| Q9NRL3 | 531 | 588 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 531 | 588 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 531 | 588 | 568 | 568 | Natural variant | ID=VAR_053419;Note=V->I;Dbxref=dbSNP:rs10409124 |
| Q9NRL3 | 531 | 588 | 542 | 581 | Repeat | Note=WD 3 |
| Q9NRL3 | 531 | 588 | 587 | 628 | Repeat | Note=WD 4 |
| Q9NRL3 | 588 | 635 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 588 | 635 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 588 | 635 | 587 | 628 | Repeat | Note=WD 4 |
| Q9NRL3 | 588 | 635 | 635 | 674 | Repeat | Note=WD 5 |
| Q9NRL3 | 668 | 697 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 668 | 697 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 668 | 697 | 635 | 674 | Repeat | Note=WD 5 |
| Q9NRL3 | 668 | 697 | 677 | 716 | Repeat | Note=WD 6 |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q9NRL3 | 180 | 245 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 180 | 245 | 206 | 206 | Modified residue | Note=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:23186163;Dbxref=PMID:19690332,PMID:20068231,PMID:23186163 |
| Q9NRL3 | 180 | 245 | 165 | 182 | Region | Note=Calmodulin-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9NRL3 | 475 | 490 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 475 | 490 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 475 | 490 | 436 | 475 | Repeat | Note=WD 1 |
| Q9NRL3 | 475 | 490 | 489 | 528 | Repeat | Note=WD 2 |
| Q9NRL3 | 531 | 588 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 531 | 588 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 531 | 588 | 568 | 568 | Natural variant | ID=VAR_053419;Note=V->I;Dbxref=dbSNP:rs10409124 |
| Q9NRL3 | 531 | 588 | 542 | 581 | Repeat | Note=WD 3 |
| Q9NRL3 | 531 | 588 | 587 | 628 | Repeat | Note=WD 4 |
| Q9NRL3 | 588 | 635 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 588 | 635 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 588 | 635 | 587 | 628 | Repeat | Note=WD 4 |
| Q9NRL3 | 588 | 635 | 635 | 674 | Repeat | Note=WD 5 |
| Q9NRL3 | 668 | 697 | 377 | 753 | Alternative sequence | ID=VSP_056172;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039 |
| Q9NRL3 | 668 | 697 | 1 | 753 | Chain | ID=PRO_0000051239;Note=Striatin-4 |
| Q9NRL3 | 668 | 697 | 635 | 674 | Repeat | Note=WD 5 |
| Q9NRL3 | 668 | 697 | 677 | 716 | Repeat | Note=WD 6 |
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SNVs in the skipped exons for STRN4 |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
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| - Differential PSIs between mutated versus non-mutated samples. |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| LIHC | TCGA-G3-A3CJ-01 | exon_skip_319807 | 47226067 | 47226207 | 47226075 | 47226075 | Frame_Shift_Del | C | - | p.G640fs |
| LIHC | TCGA-G3-A3CJ-01 | exon_skip_319812 | 47228589 | 47228636 | 47228617 | 47228617 | Frame_Shift_Del | C | - | p.E489fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_319814 | 47230709 | 47230803 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_319815 | 47230709 | 47230824 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_319816 | 47230709 | 47230948 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_319814 | 47230709 | 47230803 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_319815 | 47230709 | 47230824 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_319816 | 47230709 | 47230948 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| THYM | TCGA-XU-A932-01 | exon_skip_319814 | 47230709 | 47230803 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| THYM | TCGA-XU-A932-01 | exon_skip_319815 | 47230709 | 47230824 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| THYM | TCGA-XU-A932-01 | exon_skip_319816 | 47230709 | 47230948 | 47230756 | 47230756 | Frame_Shift_Del | C | - | p.D408fs |
| LIHC | TCGA-DD-A1EG-01 | exon_skip_319818 exon_skip_319820 | 47231875 | 47232034 | 47231946 | 47231946 | Frame_Shift_Del | C | - | p.G323fs |
| LIHC | TCGA-G3-A3CJ-01 | exon_skip_319818 exon_skip_319820 | 47231875 | 47232034 | 47231957 | 47231957 | Frame_Shift_Del | A | - | p.F319fs |
| LIHC | TCGA-G3-A3CJ-01 | exon_skip_319832 | 47240080 | 47240158 | 47240145 | 47240145 | Frame_Shift_Del | G | - | p.P158fs |
| KIRC | TCGA-A3-3349-01 | exon_skip_319818 exon_skip_319820 | 47231875 | 47232034 | 47231888 | 47231889 | Frame_Shift_Ins | - | C | p.S342fs |
| PRAD | TCGA-HC-7075-01 | exon_skip_319822 | 47236296 | 47236493 | 47236332 | 47236332 | Nonsense_Mutation | G | T | p.S234* |
| BRCA | TCGA-A7-A0CE-01 | exon_skip_319832 | 47240080 | 47240158 | 47240084 | 47240084 | Nonsense_Mutation | G | A | p.R179* |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
 | Sample: TCGA-DD-A39Y-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_319815 | |
| Skipped exon start: 47230709 | |
| Skipped exon end: 47230824 | |
| Mutation start: 47230756 | |
| Mutation end: 47230756 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.D408fs | |
| Sample: TCGA-DD-A39Y-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_319814 | |
| Skipped exon start: 47230709 | |
| Skipped exon end: 47230803 | |
| Mutation start: 47230756 | |
| Mutation end: 47230756 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.D408fs | |
| Sample: TCGA-DD-A39Y-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_319816 | |
| Skipped exon start: 47230709 | |
| Skipped exon end: 47230948 | |
| Mutation start: 47230756 | |
| Mutation end: 47230756 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.D408fs | |
exon_skip_105023_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_101824_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106032_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106378_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106523_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_106524_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_109527_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_109529_LIHC_TCGA-DD-A39Y-01.png | |
exon_skip_110000_LIHC_TCGA-DD-A39Y-01.png | |
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 | Sample: TCGA-XU-A932-01 |
| Cancer type: THYM | |
| ESID: exon_skip_319815 | |
| Skipped exon start: 47230709 | |
| Skipped exon end: 47230824 | |
| Mutation start: 47230756 | |
| Mutation end: 47230756 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.D408fs | |
| Sample: TCGA-XU-A932-01 |
| Cancer type: THYM | |
| ESID: exon_skip_319814 | |
| Skipped exon start: 47230709 | |
| Skipped exon end: 47230803 | |
| Mutation start: 47230756 | |
| Mutation end: 47230756 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.D408fs | |
| Sample: TCGA-XU-A932-01 |
| Cancer type: THYM | |
| ESID: exon_skip_319816 | |
| Skipped exon start: 47230709 | |
| Skipped exon end: 47230948 | |
| Mutation start: 47230756 | |
| Mutation end: 47230756 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: C | |
| Mutation seq: - | |
| AAchange: p.D408fs | |
exon_skip_319816_THYM_TCGA-XU-A932-01.png | |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47231875 | 47232034 | 47231884 | 47231884 | Frame_Shift_Del | G | - | p.H344fs |
| JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47236296 | 47236493 | 47236373 | 47236373 | Frame_Shift_Del | G | - | p.P220fs |
| JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47226371 | 47226541 | 47226403 | 47226403 | Missense_Mutation | G | C | p.P578R |
| HEC59_ENDOMETRIUM | 47226371 | 47226541 | 47226406 | 47226406 | Missense_Mutation | C | T | p.S577N |
| MEWO_SKIN | 47226371 | 47226541 | 47226484 | 47226484 | Missense_Mutation | G | A | p.A551V |
| CW2_LARGE_INTESTINE | 47226371 | 47226541 | 47226488 | 47226488 | Missense_Mutation | G | T | p.L550M |
| HEC108_ENDOMETRIUM | 47228589 | 47228636 | 47228598 | 47228598 | Missense_Mutation | C | T | p.R488Q |
| MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47230709 | 47230824 | 47230744 | 47230744 | Missense_Mutation | G | A | p.L405F |
| MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47230709 | 47230803 | 47230744 | 47230744 | Missense_Mutation | G | A | p.L405F |
| MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47230709 | 47230948 | 47230744 | 47230744 | Missense_Mutation | G | A | p.L405F |
| CW2_LARGE_INTESTINE | 47231875 | 47232034 | 47231917 | 47231917 | Missense_Mutation | C | G | p.D333H |
| HEC1_ENDOMETRIUM | 47231875 | 47232034 | 47231944 | 47231944 | Missense_Mutation | A | G | p.S324P |
| MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47231875 | 47232034 | 47231946 | 47231946 | Missense_Mutation | C | T | p.G323D |
| SKMEL2_SKIN | 47231875 | 47232034 | 47231947 | 47231947 | Missense_Mutation | C | A | p.G323C |
| SNU1196_BILIARY_TRACT | 47236296 | 47236493 | 47236314 | 47236314 | Missense_Mutation | A | C | p.I240S |
| GCT_SOFT_TISSUE | 47236296 | 47236493 | 47236402 | 47236402 | Missense_Mutation | C | T | p.G211R |
| NH12_AUTONOMIC_GANGLIA | 47236296 | 47236493 | 47236437 | 47236437 | Missense_Mutation | A | G | p.V199A |
| LN464_CENTRAL_NERVOUS_SYSTEM | 47236296 | 47236493 | 47236452 | 47236452 | Missense_Mutation | A | G | p.M194T |
| ACN_AUTONOMIC_GANGLIA | 47236296 | 47236493 | 47236452 | 47236452 | Missense_Mutation | A | G | p.M194T |
| 2313287_STOMACH | 47240080 | 47240158 | 47240096 | 47240096 | Missense_Mutation | G | A | p.R175W |
| MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 47225243 | 47225329 | 47225248 | 47225248 | Nonsense_Mutation | G | C | p.S696* |
| UACC812_BREAST | 47228589 | 47228636 | 47228635 | 47228635 | Splice_Site | T | A | p.N476Y |
| ACCMESO1_PLEURA | 47230709 | 47230824 | 47230709 | 47230709 | Splice_Site | A | C | p.D416E |
| ACCMESO1_PLEURA | 47230709 | 47230803 | 47230709 | 47230709 | Splice_Site | A | C | p.D416E |
| ACCMESO1_PLEURA | 47230709 | 47230948 | 47230709 | 47230709 | Splice_Site | A | C | p.D416E |
| MFM223_BREAST | 47230709 | 47230824 | 47230802 | 47230802 | Splice_Site | G | A | p.D385D |
| MFM223_BREAST | 47230709 | 47230803 | 47230802 | 47230802 | Splice_Site | G | A | p.D385D |
| MFM223_BREAST | 47230709 | 47230948 | 47230802 | 47230802 | Splice_Site | G | A | p.D385D |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for STRN4 |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for STRN4 |
Top |
Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for STRN4 |
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RelatedDrugs for STRN4 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for STRN4 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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