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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for TBK1

check button Gene summary
Gene informationGene symbol

TBK1

Gene ID

29110

Gene nameTANK binding kinase 1
SynonymsFTDALS4|IIAE8|NAK|T2K
Cytomap

12q14.2

Type of geneprotein-coding
Descriptionserine/threonine-protein kinase TBK1NF-kB-activating kinaseNF-kappa-B-activating kinase
Modification date20180523
UniProtAcc

Q9UHD2

ContextPubMed: TBK1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TBK1

GO:0006468

protein phosphorylation

27103069

TBK1

GO:0016239

positive regulation of macroautophagy

27103069

TBK1

GO:0018105

peptidyl-serine phosphorylation

25803835|27103069

TBK1

GO:0018107

peptidyl-threonine phosphorylation

27103069

TBK1

GO:0032727

positive regulation of interferon-alpha production

16127453

TBK1

GO:0032728

positive regulation of interferon-beta production

16127453

TBK1

GO:0045944

positive regulation of transcription by RNA polymerase II

16127453


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Exon skipping events across known transcript of Ensembl for TBK1 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for TBK1

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for TBK1

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_849531264849696:64849737:64853968:64854109:64858113:6485817964853968:64854109ENSG00000183735.5ENST00000540417.1,ENST00000539810.1,ENST00000331710.5,ENST00000538890.1
exon_skip_849551264879705:64879797:64882266:64882368:64883820:6488389964882266:64882368ENSG00000183735.5ENST00000331710.5
exon_skip_849561264882266:64882368:64883820:64883899:64889262:6488938464883820:64883899ENSG00000183735.5ENST00000331710.5
exon_skip_849581264889262:64889384:64889478:64889555:64890146:6489018664889478:64889555ENSG00000183735.5ENST00000331710.5
exon_skip_849611264891427:64891534:64891747:64891819:64895109:6489588864891747:64891819ENSG00000183735.5ENST00000331710.5

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for TBK1

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_849531264849696:64849737:64853968:64854109:64858113:6485817964853968:64854109ENSG00000183735.5ENST00000331710.5,ENST00000538890.1,ENST00000540417.1,ENST00000539810.1
exon_skip_849551264879705:64879797:64882266:64882368:64883820:6488389964882266:64882368ENSG00000183735.5ENST00000331710.5
exon_skip_849561264882266:64882368:64883820:64883899:64889262:6488938464883820:64883899ENSG00000183735.5ENST00000331710.5
exon_skip_849581264889262:64889384:64889478:64889555:64890146:6489018664889478:64889555ENSG00000183735.5ENST00000331710.5
exon_skip_849611264891427:64891534:64891747:64891819:64895109:6489588864891747:64891819ENSG00000183735.5ENST00000331710.5

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for TBK1

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003317106488382064883899Frame-shift
ENST000003317106488947864889555Frame-shift
ENST000003317106485396864854109In-frame
ENST000003317106488226664882368In-frame
ENST000003317106489174764891819In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003317106488382064883899Frame-shift
ENST000003317106488947864889555Frame-shift
ENST000003317106485396864854109In-frame
ENST000003317106488226664882368In-frame
ENST000003317106489174764891819In-frame

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Infer the effects of exon skipping event on protein functional features for TBK1

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000331710327372964853968648541094275672976
ENST000003317103273729648822666488236816801781447480
ENST000003317103273729648917476489181924062477689712

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000331710327372964853968648541094275672976
ENST000003317103273729648822666488236816801781447480
ENST000003317103273729648917476489181924062477689712

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9UHD229763440Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229766567Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4IWO
Q9UHD229767075Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229763838Binding siteNote=ATP;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q9UHD229761729ChainID=PRO_0000086743;Note=Serine/threonine-protein kinase TBK1
Q9UHD229763030Cross-linkNote=Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin);Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453971;Dbxref=PMID:23453971
Q9UHD229769310DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q9UHD229764246HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229764961HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229763030MutagenesisNote=Decreases ubiquitination. Abolishes ubiquitination%2C phosphorylation and kinase activity%3B when associated with R-401. K->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453971;Dbxref=PMID:23453971
Q9UHD229763333MutagenesisNote=Decreases phosphorylation and kinase activity. D->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453971;Dbxref=PMID:23453971
Q9UHD229763838MutagenesisNote=Loss of kinase activity. K->A;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:10581243,ECO:0000269|PubMed:22851595,ECO:0000269|PubMed:23453971,ECO:0000269|PubMed:23453972;Dbxref=PMID:10581243,PMID:22851595,PM
Q9UHD229764747Natural variantID=VAR_073938;Note=In FTDALS4%3B loss of kinase activity. R->H;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:25803835;Dbxref=PMID:25803835
Q9UHD229765050Natural variantID=VAR_080517;Note=In IIAE8%3B decreased expression levels. D->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22851595;Dbxref=dbSNP:rs1010930015,PMID:22851595
Q9UHD229762931TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD24474801729ChainID=PRO_0000086743;Note=Serine/threonine-protein kinase TBK1
Q9UHD2447480407657Coiled coil.
Q9UHD2447480408480HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4IM0
Q9UHD2447480448448MutagenesisNote=Decreases phosphorylation and kinase activity. Abolishes dimerization%3B when associated with R-355. E->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480459459MutagenesisNote=Abolishes dimerization and decreases kinase activity but no effect on phosphorylation%3B when associated with E-466 and E-470. H->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480466466MutagenesisNote=Abolishes dimerization and decreases kinase activity but no effect on phosphorylation%3B when associated with E-459 and E-470. I->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480470470MutagenesisNote=Abolishes dimerization and decreases kinase activity but no effect on phosphorylation%3B when associated with E-459 and E-466. F->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480464464Natural variantID=VAR_041212;Note=V->A;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:17344846,ECO:0000269|PubMed:21447600;Dbxref=dbSNP:rs35635889,PMID:17344846,PMID:21447600
Q9UHD26897121729ChainID=PRO_0000086743;Note=Serine/threonine-protein kinase TBK1
Q9UHD2689712658713Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q9UHD2689712680714HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:5EP6
Q9UHD2689712690690MutagenesisNote=Decreases interaction with TANK. M->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712693693MutagenesisNote=Almost abolishes interaction with TANK. L->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712694694MutagenesisNote=Strongly decreases interaction with TANK and TBKBP1. No effect on phosphorylation. K->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712704704MutagenesisNote=Strongly decreases interaction with AZI2%2C TANK and TBKBP1. No effect on phosphorylation. L->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712708708MutagenesisNote=Decreases interaction with TANK. N->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712711711MutagenesisNote=Almost abolishes interaction with TANK. L->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712696696Natural variantID=VAR_073948;Note=In FTDALS4%3B loss of kinase activity%3B impairs binding to OPTN. E->K;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:25803835,ECO:0000269|PubMed:25943890;Dbxref=dbSNP:rs748112833,PMID:25803835,PMID:25943890


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9UHD229763440Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229766567Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4IWO
Q9UHD229767075Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229763838Binding siteNote=ATP;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q9UHD229761729ChainID=PRO_0000086743;Note=Serine/threonine-protein kinase TBK1
Q9UHD229763030Cross-linkNote=Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin);Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453971;Dbxref=PMID:23453971
Q9UHD229769310DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q9UHD229764246HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229764961HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD229763030MutagenesisNote=Decreases ubiquitination. Abolishes ubiquitination%2C phosphorylation and kinase activity%3B when associated with R-401. K->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453971;Dbxref=PMID:23453971
Q9UHD229763333MutagenesisNote=Decreases phosphorylation and kinase activity. D->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453971;Dbxref=PMID:23453971
Q9UHD229763838MutagenesisNote=Loss of kinase activity. K->A;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:10581243,ECO:0000269|PubMed:22851595,ECO:0000269|PubMed:23453971,ECO:0000269|PubMed:23453972;Dbxref=PMID:10581243,PMID:22851595,PM
Q9UHD229764747Natural variantID=VAR_073938;Note=In FTDALS4%3B loss of kinase activity. R->H;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:25803835;Dbxref=PMID:25803835
Q9UHD229765050Natural variantID=VAR_080517;Note=In IIAE8%3B decreased expression levels. D->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22851595;Dbxref=dbSNP:rs1010930015,PMID:22851595
Q9UHD229762931TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4EUU
Q9UHD24474801729ChainID=PRO_0000086743;Note=Serine/threonine-protein kinase TBK1
Q9UHD2447480407657Coiled coil.
Q9UHD2447480408480HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4IM0
Q9UHD2447480448448MutagenesisNote=Decreases phosphorylation and kinase activity. Abolishes dimerization%3B when associated with R-355. E->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480459459MutagenesisNote=Abolishes dimerization and decreases kinase activity but no effect on phosphorylation%3B when associated with E-466 and E-470. H->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480466466MutagenesisNote=Abolishes dimerization and decreases kinase activity but no effect on phosphorylation%3B when associated with E-459 and E-470. I->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480470470MutagenesisNote=Abolishes dimerization and decreases kinase activity but no effect on phosphorylation%3B when associated with E-459 and E-466. F->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23453972;Dbxref=PMID:23453972
Q9UHD2447480464464Natural variantID=VAR_041212;Note=V->A;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:17344846,ECO:0000269|PubMed:21447600;Dbxref=dbSNP:rs35635889,PMID:17344846,PMID:21447600
Q9UHD26897121729ChainID=PRO_0000086743;Note=Serine/threonine-protein kinase TBK1
Q9UHD2689712658713Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q9UHD2689712680714HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:5EP6
Q9UHD2689712690690MutagenesisNote=Decreases interaction with TANK. M->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712693693MutagenesisNote=Almost abolishes interaction with TANK. L->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712694694MutagenesisNote=Strongly decreases interaction with TANK and TBKBP1. No effect on phosphorylation. K->E;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712704704MutagenesisNote=Strongly decreases interaction with AZI2%2C TANK and TBKBP1. No effect on phosphorylation. L->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712708708MutagenesisNote=Decreases interaction with TANK. N->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712711711MutagenesisNote=Almost abolishes interaction with TANK. L->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:21931631;Dbxref=PMID:21931631
Q9UHD2689712696696Natural variantID=VAR_073948;Note=In FTDALS4%3B loss of kinase activity%3B impairs binding to OPTN. E->K;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:25803835,ECO:0000269|PubMed:25943890;Dbxref=dbSNP:rs748112833,PMID:25803835,PMID:25943890


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SNVs in the skipped exons for TBK1

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A1EG-01exon_skip_84953
64853969648541096485405964854059Frame_Shift_DelA-p.K61fs
LIHCTCGA-G3-A3CJ-01exon_skip_84953
64853969648541096485405964854059Frame_Shift_DelA-p.K61fs
LIHCTCGA-DD-A3A0-01exon_skip_84955
64882267648823686488234564882345Frame_Shift_DelA-p.R473fs
LIHCTCGA-DD-A1EG-01exon_skip_84955
64882267648823686488235364882353Frame_Shift_DelA-p.E476fs
LIHCTCGA-DD-A39Y-01exon_skip_84955
64882267648823686488235364882353Frame_Shift_DelA-p.E476fs
LIHCTCGA-G3-A3CJ-01exon_skip_84956
64883821648838996488382664883826Frame_Shift_DelA-p.E483fs
UCECTCGA-D1-A103-01exon_skip_84958
64889479648895556488947864889478Splice_SiteGAe14-1

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
NCIH854_LUNG64853969648541096485405364854053Missense_MutationGAp.V58M
NCIH1975_LUNG64882267648823686488229064882290Missense_MutationAGp.N455S
DANG_PANCREAS64882267648823686488229964882299Missense_MutationTCp.V458A
BALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE64882267648823686488233164882331Missense_MutationGTp.D469Y
SHP77_LUNG64889479648895556488949264889492Missense_MutationCGp.Q553E
SISO_CERVIX64889479648895556488949664889496Missense_MutationTCp.V554A
GRST_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE64889479648895556488949664889496Missense_MutationTCp.V554A
KMBC2_URINARY_TRACT64889479648895556488951664889516Missense_MutationGAp.E561K
HEC251_ENDOMETRIUM64891748648918196489179164891791Missense_MutationCTp.L704F

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for TBK1

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TBK1


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TBK1


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RelatedDrugs for TBK1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
Q9UHD2DB12010FostamatinibSerine/threonine-protein kinase TBK1small moleculeapproved|investigational

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RelatedDiseases for TBK1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
TBK1C4225325FRONTOTEMPORAL DEMENTIA AND/OR AMYOTROPHIC LATERAL SCLEROSIS 42UNIPROT