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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for CBLC

check button Gene summary
Gene informationGene symbol

CBLC

Gene ID

23624

Gene nameCbl proto-oncogene C
SynonymsCBL-3|CBL-SL|RNF57
Cytomap

19q13.32

Type of geneprotein-coding
DescriptionE3 ubiquitin-protein ligase CBL-CCas-Br-M (murine) ecotropic retroviral transforming sequence cCas-Br-M (murine) ectropic retroviral transforming sequence cCbl proto-oncogene C, E3 ubiquitin protein ligaseCbl proto-oncogene, E3 ubiquitin protein ligas
Modification date20180523
UniProtAcc

Q9ULV8

ContextPubMed: CBLC [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CBLC

GO:0006511

ubiquitin-dependent protein catabolic process

14661060

CBLC

GO:0007175

negative regulation of epidermal growth factor-activated receptor activity

10362357

CBLC

GO:0016567

protein ubiquitination

14661060

CBLC

GO:0042059

negative regulation of epidermal growth factor receptor signaling pathway

10362357

CBLC

GO:0043407

negative regulation of MAP kinase activity

10362357


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Exon skipping events across known transcript of Ensembl for CBLC from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for CBLC

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for CBLC

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3079311945281125:45281541:45284161:45284308:45284463:4528462045284161:45284308ENSG00000142273.6ENST00000341505.4
exon_skip_3079431945284161:45284308:45284463:45284620:45285626:4528574445284463:45284620ENSG00000142273.6ENST00000341505.4,ENST00000270279.3
exon_skip_3079561945284571:45284620:45285626:45285748:45287520:4528765845285626:45285748ENSG00000142273.6ENST00000270279.3
exon_skip_3079571945284463:45284620:45285626:45285748:45293260:4529334845285626:45285748ENSG00000142273.6ENST00000341505.4
exon_skip_3079791945285626:45285748:45287520:45287658:45293260:4529334845287520:45287658ENSG00000142273.6ENST00000270279.3
exon_skip_3079901945287520:45287658:45293260:45293348:45295639:4529577145293260:45293348ENSG00000142273.6ENST00000270279.3
exon_skip_3080021945293260:45293348:45295639:45295771:45296730:4529678745295639:45295771ENSG00000142273.6ENST00000341505.4,ENST00000270279.3
exon_skip_3080111945296730:45296877:45297460:45297538:45303637:4530370745297460:45297538ENSG00000142273.6ENST00000341505.4,ENST00000270279.3

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for CBLC

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_3079311945281125:45281541:45284161:45284308:45284463:4528462045284161:45284308ENSG00000142273.6ENST00000341505.4
exon_skip_3079431945284161:45284308:45284463:45284620:45285626:4528574445284463:45284620ENSG00000142273.6ENST00000270279.3,ENST00000341505.4
exon_skip_3079561945284571:45284620:45285626:45285748:45287520:4528765845285626:45285748ENSG00000142273.6ENST00000270279.3
exon_skip_3079571945284463:45284620:45285626:45285748:45293260:4529334845285626:45285748ENSG00000142273.6ENST00000341505.4
exon_skip_3079791945285626:45285748:45287520:45287658:45293260:4529334845287520:45287658ENSG00000142273.6ENST00000270279.3
exon_skip_3079901945287520:45287658:45293260:45293348:45295639:4529577145293260:45293348ENSG00000142273.6ENST00000270279.3
exon_skip_3080021945293260:45293348:45295639:45295771:45296730:4529678745295639:45295771ENSG00000142273.6ENST00000270279.3,ENST00000341505.4
exon_skip_3080111945296730:45296877:45297460:45297538:45303637:4530370745297460:45297538ENSG00000142273.6ENST00000270279.3,ENST00000341505.4

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for CBLC

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002702794528446345284620Frame-shift
ENST000002702794528562645285748Frame-shift
ENST000002702794529326045293348Frame-shift
ENST000002702794528752045287658In-frame
ENST000002702794529563945295771In-frame
ENST000002702794529746045297538In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002702794528446345284620Frame-shift
ENST000002702794528562645285748Frame-shift
ENST000002702794529326045293348Frame-shift
ENST000002702794528752045287658In-frame
ENST000002702794529563945295771In-frame
ENST000002702794529746045297538In-frame

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Infer the effects of exon skipping event on protein functional features for CBLC

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000027027915964744528752045287658843980260305
ENST000002702791596474452956394529577110691200335379
ENST000002702791596474452974604529753813481425428454

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000027027915964744528752045287658843980260305
ENST000002702791596474452956394529577110691200335379
ENST000002702791596474452974604529753813481425428454

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9ULV8260305261306Alternative sequenceID=VSP_005732;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:10362357;Dbxref=PMID:10362357
Q9ULV8260305260265Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305267269Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305273278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305284287Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305264264Binding siteNote=Phosphotyrosine
Q9ULV82603051474ChainID=PRO_0000055866;Note=E3 ubiquitin-protein ligase CBL-C
Q9ULV82603057321DomainNote=Cbl-PTB;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00839
Q9ULV8260305294303HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305264264MutagenesisNote=Abolishes interaction with EGFR. Decreases interaction with SRC and abolishes SRC ubiquitination. R->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305265265MutagenesisNote=Enhances interaction with EGFR and SRC as well as SRC ubiquitination. P->L;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305266266MutagenesisNote=Decreases interactions with EGFR and SRC as well as SRC ubiquitination. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305268268MutagenesisNote=Abolishes interaction with EGFR. Decreases interaction with and ubiquitination of SRC. T->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305276276MutagenesisNote=No effect on interaction with RET. Binds slightly to SRC%2C this interaction is independent of SRC phosphorylation. Strongly decreases SRC ubiquitination. Abolishes interaction with EGFR. G->E;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidenc
Q9ULV8260305219321RegionNote=SH2-like
Q9ULV83353791474ChainID=PRO_0000055866;Note=E3 ubiquitin-protein ligase CBL-C
Q9ULV8335379341341Modified residueNote=Phosphotyrosine%3B by SRC;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Dbxref=PMID:20525694,PMID:23145173
Q9ULV8335379341341MutagenesisNote=Induces E3 activity and autoubiquitination. Releases ubiquitin-conjugating enzyme E2 UBE2D2 faster. Y->E;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14661060,ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Db
Q9ULV8335379341341MutagenesisNote=Abolishes activation by EGF stimulation and enhancement by TGFB1I1 of E3 activity. Y->F;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14661060,ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Dbxref=PMID:1466106
Q9ULV8335379341341MutagenesisNote=Abolishes E3 activity. Missing;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14661060,ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Dbxref=PMID:14661060,PMID:20525694,PMID:23145173
Q9ULV8335379351351MutagenesisNote=No effect on TGFB1I1 and SRC interactions. Abolishes SRC ubiquitination. Abolishes interaction with TGFB1I1%3B when associated with A-366. Abolishes interaction with RET and inhibition of RET degradation. C->A;Ontology_term=ECO:0000269,ECO:0000269,EC
Q9ULV8335379366366MutagenesisNote=Abolishes interaction with TGFB1I1. Abolishes interaction with TGFB1I1%3B when associated with A-351. C->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23145173;Dbxref=PMID:23145173
Q9ULV8335379322350RegionNote=Linker
Q9ULV8335379351474RegionNote=Interaction with RET;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18753381;Dbxref=PMID:18753381
Q9ULV8335379351390Zinc fingerNote=RING-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00175
Q9ULV84284541474ChainID=PRO_0000055866;Note=E3 ubiquitin-protein ligase CBL-C
Q9ULV8428454351474RegionNote=Interaction with RET;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18753381;Dbxref=PMID:18753381


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9ULV8260305261306Alternative sequenceID=VSP_005732;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:10362357;Dbxref=PMID:10362357
Q9ULV8260305260265Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305267269Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305273278Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305284287Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305264264Binding siteNote=Phosphotyrosine
Q9ULV82603051474ChainID=PRO_0000055866;Note=E3 ubiquitin-protein ligase CBL-C
Q9ULV82603057321DomainNote=Cbl-PTB;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00839
Q9ULV8260305294303HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3VRP
Q9ULV8260305264264MutagenesisNote=Abolishes interaction with EGFR. Decreases interaction with SRC and abolishes SRC ubiquitination. R->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305265265MutagenesisNote=Enhances interaction with EGFR and SRC as well as SRC ubiquitination. P->L;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305266266MutagenesisNote=Decreases interactions with EGFR and SRC as well as SRC ubiquitination. S->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305268268MutagenesisNote=Abolishes interaction with EGFR. Decreases interaction with and ubiquitination of SRC. T->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22888118;Dbxref=PMID:22888118
Q9ULV8260305276276MutagenesisNote=No effect on interaction with RET. Binds slightly to SRC%2C this interaction is independent of SRC phosphorylation. Strongly decreases SRC ubiquitination. Abolishes interaction with EGFR. G->E;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidenc
Q9ULV8260305219321RegionNote=SH2-like
Q9ULV83353791474ChainID=PRO_0000055866;Note=E3 ubiquitin-protein ligase CBL-C
Q9ULV8335379341341Modified residueNote=Phosphotyrosine%3B by SRC;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Dbxref=PMID:20525694,PMID:23145173
Q9ULV8335379341341MutagenesisNote=Induces E3 activity and autoubiquitination. Releases ubiquitin-conjugating enzyme E2 UBE2D2 faster. Y->E;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14661060,ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Db
Q9ULV8335379341341MutagenesisNote=Abolishes activation by EGF stimulation and enhancement by TGFB1I1 of E3 activity. Y->F;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14661060,ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Dbxref=PMID:1466106
Q9ULV8335379341341MutagenesisNote=Abolishes E3 activity. Missing;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14661060,ECO:0000269|PubMed:20525694,ECO:0000269|PubMed:23145173;Dbxref=PMID:14661060,PMID:20525694,PMID:23145173
Q9ULV8335379351351MutagenesisNote=No effect on TGFB1I1 and SRC interactions. Abolishes SRC ubiquitination. Abolishes interaction with TGFB1I1%3B when associated with A-366. Abolishes interaction with RET and inhibition of RET degradation. C->A;Ontology_term=ECO:0000269,ECO:0000269,EC
Q9ULV8335379366366MutagenesisNote=Abolishes interaction with TGFB1I1. Abolishes interaction with TGFB1I1%3B when associated with A-351. C->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23145173;Dbxref=PMID:23145173
Q9ULV8335379322350RegionNote=Linker
Q9ULV8335379351474RegionNote=Interaction with RET;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18753381;Dbxref=PMID:18753381
Q9ULV8335379351390Zinc fingerNote=RING-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00175
Q9ULV84284541474ChainID=PRO_0000055866;Note=E3 ubiquitin-protein ligase CBL-C
Q9ULV8428454351474RegionNote=Interaction with RET;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18753381;Dbxref=PMID:18753381


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SNVs in the skipped exons for CBLC

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
CBLC_CESC_exon_skip_308002_psi_boxplot.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
BRCATCGA-A8-A06X-01exon_skip_307943
45284464452846204528460245284602Frame_Shift_DelC-p.F214fs
STADTCGA-VQ-A8P2-01exon_skip_308011
45297461452975384529750245297503Frame_Shift_Ins-Cp.L442fs
STADTCGA-VQ-A8P2-01exon_skip_308011
45297461452975384529750245297503Frame_Shift_Ins-Cp.LP442fs
PRADTCGA-CH-5761-01exon_skip_307931
45284162452843084528430045284300Nonsense_MutationCAp.C164X
CESCTCGA-EX-A69M-01exon_skip_308002
45295640452957714529576745295767Nonsense_MutationGAp.W378*
SKCMTCGA-EB-A5SF-01exon_skip_307957
exon_skip_307956
45285627452857484528574945285749Splice_SiteGC.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
CBLC_45293260_45293348_45295639_45295771_45296730_45296787_TCGA-EX-A69M-01Sample: TCGA-EX-A69M-01
Cancer type: CESC
ESID: exon_skip_308002
Skipped exon start: 45295640
Skipped exon end: 45295771
Mutation start: 45295767
Mutation end: 45295767
Mutation type: Nonsense_Mutation
Reference seq: G
Mutation seq: A
AAchange: p.W378*
exon_skip_308002_CESC_TCGA-EX-A69M-01.png
boxplot

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
NCIH2023_LUNG45284162452843084528420545284205Missense_MutationGAp.A133T
MDST8_LARGE_INTESTINE45284162452843084528426345284263Missense_MutationCTp.T152I
NCIH2342_LUNG45284464452846204528452645284526Missense_MutationGTp.G188V
HEC265_ENDOMETRIUM45284464452846204528458045284580Missense_MutationTCp.V206A
BHT101_THYROID45285627452857484528570845285708Missense_MutationGAp.V247I
SNU8_OVARY45285627452857484528572045285720Missense_MutationCAp.L251M
MELHO_SKIN45287521452876584528752345287523Missense_MutationATp.Y261F
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE45287521452876584528754345287543Missense_MutationAGp.T268A
A253_SALIVARY_GLAND45287521452876584528754745287547Missense_MutationGTp.R269L
IGROV1_OVARY45287521452876584528754745287547Missense_MutationGAp.R269H
SNU61_LARGE_INTESTINE45287521452876584528757945287579Missense_MutationTCp.S280P
HUO3N1_BONE45287521452876584528757945287579Missense_MutationTCp.S280P
LS411N_LARGE_INTESTINE45287521452876584528758945287589Missense_MutationGAp.S283N
HEC251_ENDOMETRIUM45295640452957714529572045295720Missense_MutationGTp.K362N
SNU175_LARGE_INTESTINE45297461452975384529747745297477Missense_MutationCAp.P434H
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE45287521452876584528762745287627Nonsense_MutationCTp.Q296*

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for CBLC

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for CBLC


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for CBLC


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RelatedDrugs for CBLC

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CBLC

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource