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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for SPIDR

check button Gene summary
Gene informationGene symbol

SPIDR

Gene ID

23514

Gene namescaffold protein involved in DNA repair
SynonymsKIAA0146
Cytomap

8q11.21

Type of geneprotein-coding
DescriptionDNA repair-scaffolding proteinscaffolding protein involved in DNA repair
Modification date20180523
UniProtAcc

Q14159

ContextPubMed: SPIDR [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SPIDR

GO:0006974

cellular response to DNA damage stimulus

23509288

SPIDR

GO:0010569

regulation of double-strand break repair via homologous recombination

23754376

SPIDR

GO:0031334

positive regulation of protein complex assembly

23509288

SPIDR

GO:0070202

regulation of establishment of protein localization to chromosome

23509288

SPIDR

GO:0071479

cellular response to ionizing radiation

23509288|23754376

SPIDR

GO:0072711

cellular response to hydroxyurea

23509288

SPIDR

GO:0072757

cellular response to camptothecin

23509288


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Exon skipping events across known transcript of Ensembl for SPIDR from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for SPIDR

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for SPIDR

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_483416848173556:48173583:48192449:48192568:48196616:4819668348192449:48192568ENSG00000164808.12ENST00000518074.1
exon_skip_483417848173556:48173583:48192449:48192605:48196616:4819668348192449:48192605ENSG00000164808.12ENST00000519661.1,ENST00000524006.1,ENST00000522900.1,ENST00000517824.1,ENST00000524141.1,ENST00000522222.1,ENST00000524126.1,ENST00000524033.1
exon_skip_483418848173556:48173583:48192449:48192605:48203621:4820372648192449:48192605ENSG00000164808.12ENST00000522117.1,ENST00000541342.1
exon_skip_483420848173556:48173583:48192451:48192605:48196616:4819668348192451:48192605ENSG00000164808.12ENST00000523814.1
exon_skip_483425848192451:48192605:48196616:48196683:48203621:4820372648196616:48196683ENSG00000164808.12ENST00000521214.1,ENST00000519661.1,ENST00000524006.1,ENST00000522900.1,ENST00000517824.1,ENST00000524141.1,ENST00000522222.1,ENST00000523814.1,ENST00000524126.1,ENST00000297423.4,ENST00000524033.1
exon_skip_483430848203641:48203726:48206455:48206619:48308935:4830918648206455:48206619ENSG00000164808.12ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1
exon_skip_483431848203641:48203726:48206455:48206619:48320422:4832052348206455:48206619ENSG00000164808.12ENST00000524033.1
exon_skip_483432848203641:48203726:48206455:48206619:48352884:4835295948206455:48206619ENSG00000164808.12ENST00000519661.1,ENST00000521550.1,ENST00000524126.1
exon_skip_483439848203641:48203726:48308935:48309186:48320422:4832052348308935:48309186ENSG00000164808.12ENST00000523814.1
exon_skip_483440848203641:48203726:48308935:48309186:48352884:4835295948308935:48309186ENSG00000164808.12ENST00000517824.1
exon_skip_483442848203641:48203726:48320422:48320523:48352884:4835295948320422:48320523ENSG00000164808.12ENST00000524006.1
exon_skip_483452848206455:48206619:48308935:48309186:48320422:4832052348308935:48309186ENSG00000164808.12ENST00000521214.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1
exon_skip_483455848206455:48206619:48320422:48320523:48352884:4835295948320422:48320523ENSG00000164808.12ENST00000524033.1
exon_skip_483459848206455:48206619:48352884:48353104:48508372:4850854648352884:48353104ENSG00000164808.12ENST00000519661.1,ENST00000521550.1,ENST00000524126.1
exon_skip_483464848308935:48309186:48320422:48320523:48352884:4835295948320422:48320523ENSG00000164808.12ENST00000521214.1,ENST00000524141.1,ENST00000521918.2,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1
exon_skip_483470848320422:48320523:48352884:48353104:48508372:4850854648352884:48353104ENSG00000164808.12ENST00000521214.1,ENST00000524006.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000524033.1,ENST00000518074.1
exon_skip_483474848352962:48353104:48508372:48508568:48511507:4851159748508372:48508568ENSG00000164808.12ENST00000521214.1,ENST00000519661.1,ENST00000524006.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1
exon_skip_483480848508372:48508568:48511507:48511758:48586362:4858650348511507:48511758ENSG00000164808.12ENST00000521214.1,ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1
exon_skip_483481848511507:48511758:48586362:48586503:48612964:4861305248586362:48586503ENSG00000164808.12ENST00000519401.1,ENST00000524141.1,ENST00000521550.1,ENST00000522117.1,ENST00000541342.1,ENST00000297423.4,ENST00000518074.1
exon_skip_483482848573006:48573076:48573479:48573565:48586362:4858650348573479:48573565ENSG00000164808.12ENST00000517693.1
exon_skip_483483848612969:48613052:48614282:48614426:48614517:4861457748614282:48614426ENSG00000164808.12ENST00000519362.1,ENST00000521214.1,ENST00000522321.1,ENST00000519401.1,ENST00000524141.1,ENST00000518692.1,ENST00000521550.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1
exon_skip_483484848614282:48614426:48614517:48614577:48625223:4862543448614517:48614577ENSG00000164808.12ENST00000519362.1,ENST00000521214.1,ENST00000522321.1,ENST00000519401.1,ENST00000524141.1,ENST00000518692.1,ENST00000521550.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1
exon_skip_483486848614517:48614577:48625223:48625434:48626050:4862609548625223:48625434ENSG00000164808.12ENST00000519362.1,ENST00000521214.1,ENST00000522321.1,ENST00000519401.1,ENST00000518692.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1
exon_skip_483489848626091:48626203:48639761:48639855:48641494:4864160948639761:48639855ENSG00000164808.12ENST00000519362.1,ENST00000521214.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1,ENST00000518074.1
exon_skip_483492848626091:48626203:48639761:48639855:48647868:4864788948639761:48639855ENSG00000164808.12ENST00000519401.1
exon_skip_483499848639814:48639855:48641494:48641609:48641973:4864202748641494:48641609ENSG00000164808.12ENST00000519362.1,ENST00000521214.1,ENST00000517619.1,ENST00000519141.1,ENST00000518060.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1
exon_skip_483502848639814:48639855:48641494:48641664:48647868:4864788948641494:48641664ENSG00000164808.12ENST00000518074.1
exon_skip_483506848641494:48641609:48641973:48642027:48647868:4864788948641973:48642027ENSG00000164808.12ENST00000519362.1,ENST00000521214.1,ENST00000517619.1,ENST00000519141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524126.1,ENST00000297423.4,ENST00000517693.1
exon_skip_483509848641973:48642027:48644690:48644755:48647868:4864788948644690:48644755ENSG00000164808.12ENST00000518060.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for SPIDR

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_483416848173556:48173583:48192449:48192568:48196616:4819668348192449:48192568ENSG00000164808.12ENST00000518074.1
exon_skip_483417848173556:48173583:48192449:48192605:48196616:4819668348192449:48192605ENSG00000164808.12ENST00000522900.1,ENST00000517824.1,ENST00000524126.1,ENST00000522222.1,ENST00000519661.1,ENST00000524141.1,ENST00000524033.1,ENST00000524006.1
exon_skip_483418848173556:48173583:48192449:48192605:48203621:4820372648192449:48192605ENSG00000164808.12ENST00000522117.1,ENST00000541342.1
exon_skip_483420848173556:48173583:48192451:48192605:48196616:4819668348192451:48192605ENSG00000164808.12ENST00000523814.1
exon_skip_483425848192451:48192605:48196616:48196683:48203621:4820372648196616:48196683ENSG00000164808.12ENST00000297423.4,ENST00000523814.1,ENST00000522900.1,ENST00000517824.1,ENST00000524126.1,ENST00000522222.1,ENST00000519661.1,ENST00000524141.1,ENST00000524033.1,ENST00000524006.1,ENST00000521214.1
exon_skip_483430848203641:48203726:48206455:48206619:48308935:4830918648206455:48206619ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1
exon_skip_483431848203641:48203726:48206455:48206619:48320422:4832052348206455:48206619ENSG00000164808.12ENST00000524033.1
exon_skip_483432848203641:48203726:48206455:48206619:48352884:4835295948206455:48206619ENSG00000164808.12ENST00000521550.1,ENST00000524126.1,ENST00000519661.1
exon_skip_483439848203641:48203726:48308935:48309186:48320422:4832052348308935:48309186ENSG00000164808.12ENST00000523814.1
exon_skip_483440848203641:48203726:48308935:48309186:48352884:4835295948308935:48309186ENSG00000164808.12ENST00000517824.1
exon_skip_483442848203641:48203726:48320422:48320523:48352884:4835295948320422:48320523ENSG00000164808.12ENST00000524006.1
exon_skip_483452848206455:48206619:48308935:48309186:48320422:4832052348308935:48309186ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1
exon_skip_483455848206455:48206619:48320422:48320523:48352884:4835295948320422:48320523ENSG00000164808.12ENST00000524033.1
exon_skip_483459848206455:48206619:48352884:48353104:48508372:4850854648352884:48353104ENSG00000164808.12ENST00000521550.1,ENST00000524126.1,ENST00000519661.1
exon_skip_483464848308935:48309186:48320422:48320523:48352884:4835295948320422:48320523ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000521918.2
exon_skip_483470848320422:48320523:48352884:48353104:48508372:4850854648352884:48353104ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000524141.1,ENST00000524033.1,ENST00000522117.1,ENST00000541342.1,ENST00000524006.1,ENST00000521214.1
exon_skip_483474848352962:48353104:48508372:48508568:48511507:4851159748508372:48508568ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000521550.1,ENST00000519661.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000524006.1,ENST00000521214.1,ENST00000519401.1
exon_skip_483475848352962:48353104:48508372:48508568:48586362:4858650348508372:48508568ENSG00000164808.12ENST00000524126.1
exon_skip_483480848508372:48508568:48511507:48511758:48586362:4858650348511507:48511758ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000521550.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519401.1
exon_skip_483481848511507:48511758:48586362:48586503:48612964:4861305248586362:48586503ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000521550.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000519401.1
exon_skip_483482848573006:48573076:48573479:48573565:48586362:4858650348573479:48573565ENSG00000164808.12ENST00000517693.1
exon_skip_483483848612969:48613052:48614282:48614426:48614517:4861457748614282:48614426ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000521550.1,ENST00000524126.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519401.1,ENST00000519141.1,ENST00000517693.1,ENST00000519362.1,ENST00000522321.1,ENST00000518692.1
exon_skip_483484848614282:48614426:48614517:48614577:48625223:4862543448614517:48614577ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000521550.1,ENST00000524126.1,ENST00000524141.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519401.1,ENST00000519141.1,ENST00000517693.1,ENST00000519362.1,ENST00000522321.1,ENST00000518692.1
exon_skip_483486848614517:48614577:48625223:48625434:48626050:4862609548625223:48625434ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000524126.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519401.1,ENST00000519141.1,ENST00000517693.1,ENST00000519362.1,ENST00000522321.1,ENST00000518692.1
exon_skip_483489848626091:48626203:48639761:48639855:48641494:4864160948639761:48639855ENSG00000164808.12ENST00000297423.4,ENST00000518074.1,ENST00000524126.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519141.1,ENST00000517693.1,ENST00000519362.1
exon_skip_483492848626091:48626203:48639761:48639855:48647868:4864788948639761:48639855ENSG00000164808.12ENST00000519401.1
exon_skip_483499848639814:48639855:48641494:48641609:48641973:4864202748641494:48641609ENSG00000164808.12ENST00000297423.4,ENST00000524126.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519141.1,ENST00000517693.1,ENST00000519362.1,ENST00000517619.1,ENST00000518060.1
exon_skip_483502848639814:48639855:48641494:48641664:48647868:4864788948641494:48641664ENSG00000164808.12ENST00000518074.1
exon_skip_483506848641494:48641609:48641973:48642027:48647868:4864788948641973:48642027ENSG00000164808.12ENST00000297423.4,ENST00000524126.1,ENST00000522117.1,ENST00000541342.1,ENST00000521214.1,ENST00000519141.1,ENST00000517693.1,ENST00000519362.1,ENST00000517619.1
exon_skip_483509848641973:48642027:48644690:48644755:48647868:4864788948644690:48644755ENSG00000164808.12ENST00000518060.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for SPIDR

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002974234819661648196683Frame-shift
ENST000002974234820645548206619Frame-shift
ENST000002974234830893548309186Frame-shift
ENST000002974234832042248320523Frame-shift
ENST000002974234835288448353104Frame-shift
ENST000002974234850837248508568Frame-shift
ENST000002974234851150748511758Frame-shift
ENST000002974234862522348625434Frame-shift
ENST000002974234863976148639855Frame-shift
ENST000002974234864149448641609Frame-shift
ENST000002974234858636248586503In-frame
ENST000002974234861428248614426In-frame
ENST000002974234861451748614577In-frame
ENST000002974234864197348642027In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002974234819661648196683Frame-shift
ENST000002974234820645548206619Frame-shift
ENST000002974234830893548309186Frame-shift
ENST000002974234832042248320523Frame-shift
ENST000002974234835288448353104Frame-shift
ENST000002974234850837248508568Frame-shift
ENST000002974234851150748511758Frame-shift
ENST000002974234862522348625434Frame-shift
ENST000002974234863976148639855Frame-shift
ENST000002974234864149448641609Frame-shift
ENST000002974234858636248586503In-frame
ENST000002974234861428248614426In-frame
ENST000002974234861451748614577In-frame
ENST000002974234864197348642027In-frame

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Infer the effects of exon skipping event on protein functional features for SPIDR

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000002974234005915485863624858650319292069515561
ENST000002974234005915486142824861442621582301591639
ENST000002974234005915486145174861457723022361639659
ENST000002974234005915486419734864202729352988850868

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000002974234005915485863624858650319292069515561
ENST000002974234005915486142824861442621582301591639
ENST000002974234005915486145174861457723022361639659
ENST000002974234005915486419734864202729352988850868

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q141595155611915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein
Q141595916391915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein
Q141596396591915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein
Q14159850868851915Alternative sequenceID=VSP_056654;Note=In isoform 3. LLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH->VGARPEHARTPSSLQHSEELRSEECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWWWWW;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxre
Q141598508681915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q141595155611915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein
Q141595916391915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein
Q141596396591915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein
Q14159850868851915Alternative sequenceID=VSP_056654;Note=In isoform 3. LLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGGASAEH->VGARPEHARTPSSLQHSEELRSEECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWWWWW;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxre
Q141598508681915ChainID=PRO_0000251720;Note=DNA repair-scaffolding protein


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SNVs in the skipped exons for SPIDR

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A39Y-01exon_skip_483440
exon_skip_483439
exon_skip_483452
48308936483091864830901348309013Frame_Shift_DelT-p.D201fs
LIHCTCGA-G3-A3CJ-01exon_skip_483440
exon_skip_483439
exon_skip_483452
48308936483091864830915948309159Frame_Shift_DelA-p.E250fs
LIHCTCGA-G3-A3CJ-01exon_skip_483440
exon_skip_483439
exon_skip_483452
48308936483091864830916348309163Frame_Shift_DelT-p.N251fs
LIHCTCGA-DD-A3A0-01exon_skip_483474
48508373485085684850845948508459Frame_Shift_DelA-p.E395fs
LIHCTCGA-DD-A3A0-01exon_skip_483474
48508373485085684850853848508538Frame_Shift_DelG-p.K421fs
LIHCTCGA-G3-A3CJ-01exon_skip_483480
48511508485117584851157948511579Frame_Shift_DelC-p.I455fs
LIHCTCGA-DD-A39Y-01exon_skip_483480
48511508485117584851171048511710Frame_Shift_DelG-p.R499fs
LIHCTCGA-DD-A1EG-01exon_skip_483484
48614518486145774861456748614567Frame_Shift_DelA-p.Q656fs
LIHCTCGA-DD-A1EG-01exon_skip_483486
48625224486254344862535848625358Frame_Shift_DelG-p.L704fs
LIHCTCGA-DD-A1EG-01exon_skip_483486
48625224486254344862538648625386Frame_Shift_DelG-p.G714fs
LIHCTCGA-G3-A3CJ-01exon_skip_483492
exon_skip_483489
48639762486398554863977148639771Frame_Shift_DelT-p.V784fs
LIHCTCGA-DD-A3A0-01exon_skip_483492
exon_skip_483489
48639762486398554863979348639793Frame_Shift_DelT-p.A791fs
LIHCTCGA-G3-A3CJ-01exon_skip_483499
48641495486416094864150248641502Frame_Shift_DelT-p.F815fs
LIHCTCGA-G3-A3CJ-01exon_skip_483502
48641495486416644864150248641502Frame_Shift_DelT-p.F815fs
CESCTCGA-DR-A0ZM-01exon_skip_483440
exon_skip_483439
exon_skip_483452
48308936483091864830901548309015Nonsense_MutationCGp.S202*
LUADTCGA-53-7624-01exon_skip_483440
exon_skip_483439
exon_skip_483452
48308936483091864830909548309095Nonsense_MutationATp.K229*
BLCATCGA-XF-A9T5-01exon_skip_483442
exon_skip_483464
exon_skip_483455
48320423483205234832049348320493Nonsense_MutationCTp.Q283*
LGGTCGA-DU-6392-01exon_skip_483442
exon_skip_483464
exon_skip_483455
48320423483205234832049348320493Nonsense_MutationCTp.Q283*
LIHCTCGA-BC-4073-01exon_skip_483474
48508373485085684850845648508456Nonsense_MutationCGp.S394*
SKCMTCGA-BF-AAP1-01exon_skip_483480
48511508485117584851154548511545Nonsense_MutationGAp.W444*
SKCMTCGA-BF-AAP1-01exon_skip_483480
48511508485117584851154648511546Nonsense_MutationGAp.W444*

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
SPIDR_48639814_48639855_48641494_48641664_48647868_48647889_TCGA-G3-A3CJ-01Sample: TCGA-G3-A3CJ-01
Cancer type: LIHC
ESID: exon_skip_483452
Skipped exon start: 48308936
Skipped exon end: 48309186
Mutation start: 48309159
Mutation end: 48309159
Mutation type: Frame_Shift_Del
Reference seq: A
Mutation seq: -
AAchange: p.E250fs
SPIDR_48639814_48639855_48641494_48641664_48647868_48647889_TCGA-G3-A3CJ-01Sample: TCGA-G3-A3CJ-01
Cancer type: LIHC
ESID: exon_skip_483452
Skipped exon start: 48308936
Skipped exon end: 48309186
Mutation start: 48309163
Mutation end: 48309163
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.N251fs
SPIDR_48639814_48639855_48641494_48641664_48647868_48647889_TCGA-G3-A3CJ-01Sample: TCGA-G3-A3CJ-01
Cancer type: LIHC
ESID: exon_skip_483480
Skipped exon start: 48511508
Skipped exon end: 48511758
Mutation start: 48511579
Mutation end: 48511579
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.I455fs
SPIDR_48639814_48639855_48641494_48641664_48647868_48647889_TCGA-G3-A3CJ-01Sample: TCGA-G3-A3CJ-01
Cancer type: LIHC
ESID: exon_skip_483489
Skipped exon start: 48639762
Skipped exon end: 48639855
Mutation start: 48639771
Mutation end: 48639771
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.V784fs
SPIDR_48639814_48639855_48641494_48641664_48647868_48647889_TCGA-G3-A3CJ-01Sample: TCGA-G3-A3CJ-01
Cancer type: LIHC
ESID: exon_skip_483502
Skipped exon start: 48641495
Skipped exon end: 48641664
Mutation start: 48641502
Mutation end: 48641502
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.F815fs
SPIDR_48639814_48639855_48641494_48641664_48647868_48647889_TCGA-G3-A3CJ-01Sample: TCGA-G3-A3CJ-01
Cancer type: LIHC
ESID: exon_skip_483499
Skipped exon start: 48641495
Skipped exon end: 48641609
Mutation start: 48641502
Mutation end: 48641502
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.F815fs
exon_skip_101516_LIHC_TCGA-G3-A3CJ-01.png
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
SLR21_KIDNEY48192450481926054819247648192476Frame_Shift_DelC-p.C20fs
SLR21_KIDNEY48192450481925684819247648192476Frame_Shift_DelC-p.C20fs
SLR21_KIDNEY48192452481926054819247648192476Frame_Shift_DelC-p.C20fs
LS411N_LARGE_INTESTINE48511508485117584851172048511720Frame_Shift_DelG-p.Q502fs
SW1783_CENTRAL_NERVOUS_SYSTEM48308936483091864830902848309029Frame_Shift_Ins-AAAAAp.K207fs
CP66EBV_MATCHED_NORMAL_TISSUE48308936483091864830902848309029Frame_Shift_Ins-AAAAAp.K207fs
CP66MEL_SKIN48308936483091864830902848309029Frame_Shift_Ins-AAAAAp.K207fs
SNGM_ENDOMETRIUM48508373485085684850845848508459Frame_Shift_Ins-Ap.E395fs
HS606T_FIBROBLAST48192450481926054819251448192514Missense_MutationGTp.R33I
HS606T_FIBROBLAST48192450481925684819251448192514Missense_MutationGTp.R33I
HS606T_FIBROBLAST48192452481926054819251448192514Missense_MutationGTp.R33I
CW2_LARGE_INTESTINE48192450481926054819254448192544Missense_MutationCTp.A43V
CW2_LARGE_INTESTINE48192450481925684819254448192544Missense_MutationCTp.A43V
CW2_LARGE_INTESTINE48192452481926054819254448192544Missense_MutationCTp.A43V
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48192450481926054819256548192565Missense_MutationTGp.L50R
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48192450481925684819256548192565Missense_MutationTGp.L50R
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48192452481926054819256548192565Missense_MutationTGp.L50R
JIMT1_BREAST48196617481966834819662948196629Missense_MutationGAp.E68K
HS840T_FIBROBLAST48196617481966834819662948196629Missense_MutationGAp.E68K
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48196617481966834819666848196668Missense_MutationCTp.P81S
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48206456482066194820647948206479Missense_MutationGCp.E129Q
SW1783_CENTRAL_NERVOUS_SYSTEM48308936483091864830903248309032Missense_MutationTAp.Y208N
HEC1A_ENDOMETRIUM48320423483205234832045248320452Missense_MutationTCp.L269P
A673_BONE48320423483205234832050248320502Missense_MutationTCp.S286P
COLO824_BREAST48352885483531044835296848352968Missense_MutationTAp.L321M
MM370_SKIN48352885483531044835310148353101Missense_MutationCTp.P365L
HS936T_SKIN48352885483531044835310148353101Missense_MutationCTp.P365L
HOP62_LUNG48508373485085684850845248508452Missense_MutationGAp.D393N
NCIH28_PLEURA48508373485085684850848348508483Missense_MutationCTp.P403L
SEKI_SKIN48511508485117584851157148511571Missense_MutationCGp.Q453E
SNU1040_LARGE_INTESTINE48511508485117584851157448511574Missense_MutationCTp.R454C
SARC9371_BONE48511508485117584851170048511700Missense_MutationGAp.D496N
LN229_CENTRAL_NERVOUS_SYSTEM48511508485117584851172148511721Missense_MutationGAp.G503R
CCRFCEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48511508485117584851172548511725Missense_MutationCTp.A504V
NB1643_AUTONOMIC_GANGLIA48586363485865034858642548586425Missense_MutationTCp.M536T
NCIH660_PROSTATE48614283486144264861433448614334Missense_MutationCGp.P609A
LXF289_LUNG48614283486144264861436748614367Missense_MutationGCp.D620H
HCT15_LARGE_INTESTINE48614283486144264861439748614397Missense_MutationGAp.V630I
SISO_CERVIX48614283486144264861440448614404Missense_MutationGAp.R632H
GRST_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48614283486144264861440448614404Missense_MutationGAp.R632H
SLVL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48614283486144264861441348614413Missense_MutationGTp.R635I
HS934T_FIBROBLAST48625224486254344862523248625232Missense_MutationTAp.S662R
ACN_AUTONOMIC_GANGLIA48625224486254344862525648625256Missense_MutationGCp.E670D
TGBC11TKB_STOMACH48625224486254344862539048625390Missense_MutationCTp.A715V
PACADD137_PANCREAS48625224486254344862540148625401Missense_MutationACp.S719R
HEC108_ENDOMETRIUM48625224486254344862541748625417Missense_MutationAGp.D724G
CAL62_THYROID48625224486254344862542548625425Missense_MutationCTp.R727C
ASH3_THYROID48625224486254344862542848625428Missense_MutationGTp.D728Y
MHHPREB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48639762486398554863977648639776Missense_MutationGAp.V786M
TCCSUP_URINARY_TRACT48639762486398554863978248639782Missense_MutationGAp.E788K
AN3CA_ENDOMETRIUM48639762486398554863982548639825Missense_MutationAGp.N802S
SISO_CERVIX48511508485117584851164548511645Nonsense_MutationGAp.W477*
GRST_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48511508485117584851164548511645Nonsense_MutationGAp.W477*
SNU324_PANCREAS48511508485117584851164948511649Nonsense_MutationGTp.G479*
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE48196617481966834819661848196618Splice_SiteCTp.S64L

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for SPIDR

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for SPIDR


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for SPIDR


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RelatedDrugs for SPIDR

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SPIDR

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource