Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_319687 | 19 | 46273767:46273898:46274228:46274314:46274607:46274654 | 46274228:46274314 | ENSG00000104936.13 | ENST00000458663.2,ENST00000600757.1,ENST00000596686.1 |
exon_skip_319689 | 19 | 46273767:46273898:46274228:46274318:46274607:46274654 | 46274228:46274318 | ENSG00000104936.13 | ENST00000588522.1,ENST00000291270.4,ENST00000447742.2,ENST00000343373.4 |
exon_skip_319693 | 19 | 46274228:46274314:46274607:46274654:46274825:46274923 | 46274607:46274654 | ENSG00000104936.13 | ENST00000458663.2,ENST00000600757.1,ENST00000596686.1 |
exon_skip_319694 | 19 | 46274228:46274318:46274607:46274654:46274825:46274923 | 46274607:46274654 | ENSG00000104936.13 | ENST00000588522.1,ENST00000291270.4,ENST00000447742.2,ENST00000343373.4 |
exon_skip_319697 | 19 | 46274825:46274923:46275028:46275186:46275898:46275970 | 46275028:46275186 | ENSG00000104936.13 | ENST00000588522.1,ENST00000597660.1,ENST00000354227.5,ENST00000458663.2,ENST00000291270.4,ENST00000600370.1,ENST00000600757.1,ENST00000447742.2,ENST00000596686.1,ENST00000343373.4 |
exon_skip_319706 | 19 | 46278206:46278292:46280584:46280848:46280924:46280981 | 46280584:46280848 | ENSG00000104936.13 | ENST00000588522.1,ENST00000291270.4,ENST00000596686.1,ENST00000343373.4 |
exon_skip_319707 | 19 | 46278206:46278292:46280599:46280848:46280924:46280981 | 46280599:46280848 | ENSG00000104936.13 | ENST00000354227.5,ENST00000458663.2,ENST00000600757.1,ENST00000447742.2 |
exon_skip_319710 | 19 | 46280823:46280848:46280924:46281131:46281384:46281478 | 46280924:46281131 | ENSG00000104936.13 | ENST00000588522.1,ENST00000354227.5,ENST00000458663.2,ENST00000291270.4,ENST00000600757.1,ENST00000447742.2,ENST00000596686.1,ENST00000343373.4 |
exon_skip_319711 | 19 | 46281384:46281478:46281750:46281899:46282391:46282426 | 46281750:46281899 | ENSG00000104936.13 | ENST00000596920.1 |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_319687 | 19 | 46273767:46273898:46274228:46274314:46274607:46274654 | 46274228:46274314 | ENSG00000104936.13 | ENST00000596686.1,ENST00000600757.1,ENST00000458663.2 |
exon_skip_319689 | 19 | 46273767:46273898:46274228:46274318:46274607:46274654 | 46274228:46274318 | ENSG00000104936.13 | ENST00000291270.4,ENST00000588522.1,ENST00000343373.4,ENST00000447742.2 |
exon_skip_319693 | 19 | 46274228:46274314:46274607:46274654:46274825:46274923 | 46274607:46274654 | ENSG00000104936.13 | ENST00000596686.1,ENST00000600757.1,ENST00000458663.2 |
exon_skip_319694 | 19 | 46274228:46274318:46274607:46274654:46274825:46274923 | 46274607:46274654 | ENSG00000104936.13 | ENST00000291270.4,ENST00000588522.1,ENST00000343373.4,ENST00000447742.2 |
exon_skip_319697 | 19 | 46274825:46274923:46275028:46275186:46275898:46275970 | 46275028:46275186 | ENSG00000104936.13 | ENST00000291270.4,ENST00000588522.1,ENST00000596686.1,ENST00000600757.1,ENST00000343373.4,ENST00000447742.2,ENST00000458663.2,ENST00000354227.5,ENST00000597660.1,ENST00000600370.1 |
exon_skip_319706 | 19 | 46278206:46278292:46280584:46280848:46280924:46280981 | 46280584:46280848 | ENSG00000104936.13 | ENST00000291270.4,ENST00000588522.1,ENST00000596686.1,ENST00000343373.4 |
exon_skip_319707 | 19 | 46278206:46278292:46280599:46280848:46280924:46280981 | 46280599:46280848 | ENSG00000104936.13 | ENST00000600757.1,ENST00000447742.2,ENST00000458663.2,ENST00000354227.5 |
exon_skip_319710 | 19 | 46280823:46280848:46280924:46281131:46281384:46281478 | 46280924:46281131 | ENSG00000104936.13 | ENST00000291270.4,ENST00000588522.1,ENST00000596686.1,ENST00000600757.1,ENST00000343373.4,ENST00000447742.2,ENST00000458663.2,ENST00000354227.5 |
exon_skip_319711 | 19 | 46281384:46281478:46281750:46281899:46282391:46282426 | 46281750:46281899 | ENSG00000104936.13 | ENST00000596920.1 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q09013 | 235 | 304 | 226 | 275 | Alternative sequence | ID=VSP_042100;Note=In isoform 9. Missing;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q09013 | 235 | 304 | 253 | 255 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 1 | 629 | Chain | ID=PRO_0000085924;Note=Myotonin-protein kinase |
Q09013 | 235 | 304 | 71 | 339 | Domain | Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159 |
Q09013 | 235 | 304 | 235 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 240 | 247 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 258 | 273 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 283 | 291 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 293 | 296 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 1 | 590 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
Q09013 | 304 | 392 | 378 | 382 | Alternative sequence | ID=VSP_042101;Note=In isoform 2%2C isoform 4%2C isoform 6 and isoform 10. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:1310900,ECO:0000303|PubMed:7905855,ECO:0000303|PubMed:8076686;Dbxref=PMID:1310900,PMID:7905855, |
Q09013 | 304 | 392 | 378 | 382 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 1 | 629 | Chain | ID=PRO_0000085924;Note=Myotonin-protein kinase |
Q09013 | 304 | 392 | 71 | 339 | Domain | Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159 |
Q09013 | 304 | 392 | 340 | 415 | Domain | Note=AGC-kinase C-terminal |
Q09013 | 304 | 392 | 308 | 315 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 321 | 323 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 330 | 334 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 337 | 339 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 1 | 590 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
Q09013 | 304 | 392 | 325 | 329 | Turn | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 385 | 387 | Turn | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 559 | 589 | 536 | 629 | Alternative sequence | ID=VSP_042103;Note=In isoform 5%2C isoform 6 and isoform 12. Missing;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q09013 | 559 | 589 | 550 | 629 | Alternative sequence | ID=VSP_042104;Note=In isoform 3 and isoform 4. LDGPPAVAVGQCPLVGPGPMHRRHLLLPARVPRPGLSEALSLLLFAVVLSRAAALGCIGLVAHAGQLTAVWRRPGAARAP->MAPRPWLWASARWWGQAPCTAATCCSLPGSLGLAYRRRFPCSCSPLFCLVPPPWAALGWWPTPANSPQSGAAQEPPALPEP;Ontology_term=ECO:0000303;evidence=ECO:00003 |
Q09013 | 559 | 589 | 550 | 579 | Alternative sequence | ID=VSP_042105;Note=In isoform 11. Missing;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q09013 | 559 | 589 | 1 | 629 | Chain | ID=PRO_0000085924;Note=Myotonin-protein kinase |
Q09013 | 559 | 589 | 1 | 590 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q09013 | 235 | 304 | 226 | 275 | Alternative sequence | ID=VSP_042100;Note=In isoform 9. Missing;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q09013 | 235 | 304 | 253 | 255 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 1 | 629 | Chain | ID=PRO_0000085924;Note=Myotonin-protein kinase |
Q09013 | 235 | 304 | 71 | 339 | Domain | Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159 |
Q09013 | 235 | 304 | 235 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 240 | 247 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 258 | 273 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 283 | 291 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 293 | 296 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 235 | 304 | 1 | 590 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
Q09013 | 304 | 392 | 378 | 382 | Alternative sequence | ID=VSP_042101;Note=In isoform 2%2C isoform 4%2C isoform 6 and isoform 10. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:1310900,ECO:0000303|PubMed:7905855,ECO:0000303|PubMed:8076686;Dbxref=PMID:1310900,PMID:7905855, |
Q09013 | 304 | 392 | 378 | 382 | Beta strand | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 1 | 629 | Chain | ID=PRO_0000085924;Note=Myotonin-protein kinase |
Q09013 | 304 | 392 | 71 | 339 | Domain | Note=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159 |
Q09013 | 304 | 392 | 340 | 415 | Domain | Note=AGC-kinase C-terminal |
Q09013 | 304 | 392 | 308 | 315 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 321 | 323 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 330 | 334 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 337 | 339 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 1 | 590 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
Q09013 | 304 | 392 | 325 | 329 | Turn | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 304 | 392 | 385 | 387 | Turn | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2VD5 |
Q09013 | 559 | 589 | 536 | 629 | Alternative sequence | ID=VSP_042103;Note=In isoform 5%2C isoform 6 and isoform 12. Missing;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q09013 | 559 | 589 | 550 | 629 | Alternative sequence | ID=VSP_042104;Note=In isoform 3 and isoform 4. LDGPPAVAVGQCPLVGPGPMHRRHLLLPARVPRPGLSEALSLLLFAVVLSRAAALGCIGLVAHAGQLTAVWRRPGAARAP->MAPRPWLWASARWWGQAPCTAATCCSLPGSLGLAYRRRFPCSCSPLFCLVPPPWAALGWWPTPANSPQSGAAQEPPALPEP;Ontology_term=ECO:0000303;evidence=ECO:00003 |
Q09013 | 559 | 589 | 550 | 579 | Alternative sequence | ID=VSP_042105;Note=In isoform 11. Missing;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q09013 | 559 | 589 | 1 | 629 | Chain | ID=PRO_0000085924;Note=Myotonin-protein kinase |
Q09013 | 559 | 589 | 1 | 590 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
Depth of coverage in three exons | Mutation description |
| Sample: TCGA-BR-7851-01 |
Cancer type: STAD |
ESID: exon_skip_319707 |
Skipped exon start: 46280585 |
Skipped exon end: 46280848 |
Mutation start: 46280835 |
Mutation end: 46280836 |
Mutation type: Frame_Shift_Del |
Reference seq: AG |
Mutation seq: - |
AAchange: p.L325fs |
| Sample: TCGA-BR-7851-01 |
Cancer type: STAD |
ESID: |
Skipped exon start: 46280600 |
Skipped exon end: 46280848 |
Mutation start: 46280835 |
Mutation end: 46280836 |
Mutation type: Frame_Shift_Del |
Reference seq: AG |
Mutation seq: - |
AAchange: p.L325fs |
exon_skip_290191_STAD_TCGA-BR-7851-01.png
|
exon_skip_308974_STAD_TCGA-BR-7851-01.png
|
exon_skip_313700_STAD_TCGA-BR-7851-01.png
|
exon_skip_319706_STAD_TCGA-BR-7851-01.png
|
exon_skip_385593_STAD_TCGA-BR-7851-01.png
|
exon_skip_441654_STAD_TCGA-BR-7851-01.png
|
exon_skip_507416_STAD_TCGA-BR-7851-01.png
|
exon_skip_7378_STAD_TCGA-BR-7851-01.png
|
exon_skip_96939_STAD_TCGA-BR-7851-01.png
|
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
HEC6_ENDOMETRIUM | 46280585 | 46280848 | 46280835 | 46280836 | Frame_Shift_Del | AG | - | p.L299fs |
HEC6_ENDOMETRIUM | 46280600 | 46280848 | 46280835 | 46280836 | Frame_Shift_Del | AG | - | p.L299fs |
HEC1A_ENDOMETRIUM | 46274229 | 46274314 | 46274304 | 46274305 | Frame_Shift_Ins | - | G | p.P554fs |
HEC1A_ENDOMETRIUM | 46274229 | 46274318 | 46274304 | 46274305 | Frame_Shift_Ins | - | G | p.P554fs |
SNU175_LARGE_INTESTINE | 46275029 | 46275186 | 46275131 | 46275131 | Missense_Mutation | G | A | p.T467M |
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280585 | 46280848 | 46280589 | 46280589 | Missense_Mutation | C | A | p.G381V |
MFE319_ENDOMETRIUM | 46280585 | 46280848 | 46280682 | 46280682 | Missense_Mutation | C | T | p.S350N |
MFE319_ENDOMETRIUM | 46280600 | 46280848 | 46280682 | 46280682 | Missense_Mutation | C | T | p.S350N |
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280585 | 46280848 | 46280686 | 46280686 | Missense_Mutation | C | T | p.D349N |
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280600 | 46280848 | 46280686 | 46280686 | Missense_Mutation | C | T | p.D349N |
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280585 | 46280848 | 46280704 | 46280704 | Missense_Mutation | C | T | p.D343N |
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280600 | 46280848 | 46280704 | 46280704 | Missense_Mutation | C | T | p.D343N |
SNU1040_LARGE_INTESTINE | 46280585 | 46280848 | 46280742 | 46280742 | Missense_Mutation | G | A | p.A330V |
SNU1040_LARGE_INTESTINE | 46280600 | 46280848 | 46280742 | 46280742 | Missense_Mutation | G | A | p.A330V |
NCIH1155_LUNG | 46280585 | 46280848 | 46280769 | 46280769 | Missense_Mutation | G | A | p.P321L |
NCIH1155_LUNG | 46280600 | 46280848 | 46280769 | 46280769 | Missense_Mutation | G | A | p.P321L |
HEC1B_ENDOMETRIUM | 46280585 | 46280848 | 46280811 | 46280811 | Missense_Mutation | G | T | p.P307H |
HEC1B_ENDOMETRIUM | 46280600 | 46280848 | 46280811 | 46280811 | Missense_Mutation | G | T | p.P307H |
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280585 | 46280848 | 46280821 | 46280821 | Missense_Mutation | C | T | p.E304K |
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280600 | 46280848 | 46280821 | 46280821 | Missense_Mutation | C | T | p.E304K |
NB7_AUTONOMIC_GANGLIA | 46280925 | 46281131 | 46280984 | 46280984 | Missense_Mutation | G | T | p.Q275K |
SNU1040_LARGE_INTESTINE | 46280925 | 46281131 | 46280996 | 46280996 | Missense_Mutation | T | C | p.M271V |
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280925 | 46281131 | 46280999 | 46280999 | Missense_Mutation | C | T | p.E270K |
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280925 | 46281131 | 46281005 | 46281005 | Missense_Mutation | C | T | p.A268T |
WSUNHL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46280925 | 46281131 | 46281035 | 46281035 | Missense_Mutation | C | T | p.E258K |
HEC108_ENDOMETRIUM | 46280925 | 46281131 | 46281046 | 46281046 | Missense_Mutation | C | T | p.S254N |
RMGI_OVARY | 46281751 | 46281899 | 46281793 | 46281793 | Missense_Mutation | A | C | p.V180G |
NCIH1563_LUNG | 46281751 | 46281899 | 46281797 | 46281797 | Missense_Mutation | T | C | p.I179V |
C33A_CERVIX | 46281751 | 46281899 | 46281815 | 46281815 | Missense_Mutation | G | A | p.R173C |
MHHPREB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 46281751 | 46281899 | 46281815 | 46281815 | Missense_Mutation | G | A | p.R173C |
NCIH748_LUNG | 46281751 | 46281899 | 46281815 | 46281815 | Missense_Mutation | G | A | p.R173C |
HT144_SKIN | 46281751 | 46281899 | 46281883 | 46281883 | Missense_Mutation | T | C | p.Y150C |