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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for PRSS16

check button Gene summary
Gene informationGene symbol

PRSS16

Gene ID

10279

Gene nameserine protease 16
SynonymsTSSP
Cytomap

6p22.1

Type of geneprotein-coding
Descriptionthymus-specific serine proteaseprotease, serine 16protease, serine, 16 (thymus)thymus specific serine peptidase
Modification date20180523
UniProtAcc

Q9NQE7

ContextPubMed: PRSS16 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for PRSS16 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for PRSS16

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for PRSS16

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_448721627215509:27215586:27215660:27215827:27220586:2722072827215660:27215827ENSG00000112812.11ENST00000421826.2
exon_skip_448722627215509:27215586:27215660:27215827:27222471:2722247827215660:27215827ENSG00000112812.11ENST00000466364.1
exon_skip_448746627215673:27215827:27216625:27216725:27216878:2721700827216625:27216725ENSG00000112812.11ENST00000470870.1,ENST00000230582.3
exon_skip_448747627215673:27215827:27216625:27216725:27220586:2722072827216625:27216725ENSG00000112812.11ENST00000454665.2
exon_skip_448758627215673:27215827:27216878:27217008:27220586:2722072827216878:27217008ENSG00000112812.11ENST00000468930.1
exon_skip_448776627215673:27215827:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000421826.2
exon_skip_448783627215673:27215827:27222471:27222651:27222764:2722289827222471:27222651ENSG00000112812.11ENST00000466364.1
exon_skip_448787627216714:27216725:27216878:27217008:27220586:2722072827216878:27217008ENSG00000112812.11ENST00000470870.1
exon_skip_448794627216714:27216725:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000454665.2
exon_skip_448814627216878:27217008:27218461:27218585:27218820:2721889827218461:27218585ENSG00000112812.11ENST00000475106.1,ENST00000230582.3
exon_skip_448816627216878:27217008:27218461:27218585:27220586:2722072827218461:27218585ENSG00000112812.11ENST00000485993.1
exon_skip_448832627216878:27217008:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000470870.1,ENST00000468930.1
exon_skip_448845627218524:27218585:27218820:27218898:27218995:2721904327218820:27218898ENSG00000112812.11ENST00000230582.3
exon_skip_448846627218524:27218585:27218820:27218898:27220586:2722072827218820:27218898ENSG00000112812.11ENST00000475106.1
exon_skip_448853627218820:27218898:27218995:27219043:27219528:2721981927218995:27219043ENSG00000112812.11ENST00000230582.3
exon_skip_448856627218995:27219043:27219528:27219819:27220586:2722072827219528:27219819ENSG00000112812.11ENST00000481125.1,ENST00000230582.3
exon_skip_448859627218995:27219043:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000488649.1
exon_skip_448860627218995:27219043:27220586:27220728:27222764:2722289827220586:27220728ENSG00000112812.11ENST00000492575.1
exon_skip_448865627219100:27219280:27220586:27220728:27222764:2722291027220586:27220728ENSG00000112812.11ENST00000459736.1
exon_skip_448867627219528:27219819:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000230582.3,ENST00000468138.1
exon_skip_448869627219528:27219819:27220586:27220728:27222764:2722289827220586:27220728ENSG00000112812.11ENST00000481125.1
exon_skip_448874627219528:27219819:27222471:27222651:27222764:2722289827222471:27222651ENSG00000112812.11ENST00000471463.1
exon_skip_448879627220586:27220728:27222471:27222651:27222764:2722289827222471:27222651ENSG00000112812.11ENST00000488649.1,ENST00000230582.3,ENST00000484493.1,ENST00000421826.2,ENST00000454665.2,ENST00000468138.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for PRSS16

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_448856627218995:27219043:27219528:27219819:27220586:2722072827219528:27219819ENSG00000112812.11ENST00000230582.3,ENST00000481125.1
exon_skip_448859627218995:27219043:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000488649.1
exon_skip_448860627218995:27219043:27220586:27220728:27222764:2722289827220586:27220728ENSG00000112812.11ENST00000492575.1
exon_skip_448865627219100:27219280:27220586:27220728:27222764:2722291027220586:27220728ENSG00000112812.11ENST00000459736.1
exon_skip_448867627219528:27219819:27220586:27220728:27222471:2722247827220586:27220728ENSG00000112812.11ENST00000230582.3,ENST00000468138.1
exon_skip_448869627219528:27219819:27220586:27220728:27222764:2722289827220586:27220728ENSG00000112812.11ENST00000481125.1
exon_skip_448874627219528:27219819:27222471:27222651:27222764:2722289827222471:27222651ENSG00000112812.11ENST00000471463.1
exon_skip_448879627220586:27220728:27222471:27222651:27222764:2722289827222471:27222651ENSG00000112812.11ENST00000454665.2,ENST00000421826.2,ENST00000230582.3,ENST00000488649.1,ENST00000484493.1,ENST00000468138.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for PRSS16

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002305822721662527216725Frame-shift
ENST000002305822721846127218585Frame-shift
ENST000002305822722058627220728Frame-shift
ENST000002305822721882027218898In-frame
ENST000002305822721899527219043In-frame
ENST000002305822721952827219819In-frame
ENST000002305822722247127222651In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000002305822722058627220728Frame-shift
ENST000002305822721952827219819In-frame
ENST000002305822722247127222651In-frame

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Infer the effects of exon skipping event on protein functional features for PRSS16

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000023058227335142721882027218898607684197223
ENST0000023058227335142721899527219043685732223239
ENST00000230582273351427219528272198197331023239336
ENST000002305822733514272224712722265111661345383443

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST00000230582273351427219528272198197331023239336
ENST000002305822733514272224712722265111661345383443

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9NQE719722325514ChainID=PRO_0000027320;Note=Thymus-specific serine protease
Q9NQE7197223204204Natural variantID=VAR_051827;Note=A->G;Dbxref=dbSNP:rs35466700
Q9NQE722323925514ChainID=PRO_0000027320;Note=Thymus-specific serine protease
Q9NQE723933625514ChainID=PRO_0000027320;Note=Thymus-specific serine protease
Q9NQE7239336321321GlycosylationNote=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9NQE738344325514ChainID=PRO_0000027320;Note=Thymus-specific serine protease


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q9NQE723933625514ChainID=PRO_0000027320;Note=Thymus-specific serine protease
Q9NQE7239336321321GlycosylationNote=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
Q9NQE738344325514ChainID=PRO_0000027320;Note=Thymus-specific serine protease


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SNVs in the skipped exons for PRSS16

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A39Y-01exon_skip_448747
exon_skip_448746
27216626272167252721662827216628Frame_Shift_DelT-p.R80fs
STADTCGA-HU-A4GT-01exon_skip_448845
exon_skip_448846
27218821272188982721882327218823Frame_Shift_DelC-p.F198fs
COADTCGA-AZ-6598-01exon_skip_448856
27219529272198192721976027219760Frame_Shift_DelG-p.L316fs
LIHCTCGA-DD-A39Y-01exon_skip_448776
exon_skip_448832
exon_skip_448794
exon_skip_448860
exon_skip_448859
exon_skip_448867
exon_skip_448865
exon_skip_448869
27220587272207282722062327220623Frame_Shift_DelT-p.F349fs
SKCMTCGA-FS-A4F8-06exon_skip_448721
exon_skip_448722
27215661272158272721568427215684Nonsense_MutationGTp.E32*
SKCMTCGA-FS-A4F8-06exon_skip_448721
exon_skip_448722
27215661272158272721568427215684Nonsense_MutationGTp.E32X
LUADTCGA-05-5428-01exon_skip_448747
exon_skip_448746
27216626272167252721663427216634Nonsense_MutationGAp.W82*
SKCMTCGA-GN-A4U4-06exon_skip_448747
exon_skip_448746
27216626272167252721665227216652Nonsense_MutationGAp.W88*
SKCMTCGA-D3-A3C3-06exon_skip_448787
exon_skip_448758
27216879272170082721690627216906Nonsense_MutationGAp.W122*
SKCMTCGA-W3-AA21-06exon_skip_448787
exon_skip_448758
27216879272170082721698027216980Nonsense_MutationCTp.Q147*
LIHCTCGA-FV-A495-01exon_skip_448776
exon_skip_448832
exon_skip_448794
exon_skip_448860
exon_skip_448859
exon_skip_448867
exon_skip_448865
exon_skip_448869
27220587272207282722073027220730Splice_SiteTC.
PAADTCGA-IB-7651-01exon_skip_448874
exon_skip_448879
exon_skip_448783
27222472272226512722247127222471Splice_SiteGT.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
PRSS16_27220586_27220728_27222471_27222651_27222764_27222898_TCGA-IB-7651-01Sample: TCGA-IB-7651-01
Cancer type: PAAD
ESID: exon_skip_448783
Skipped exon start: 27222472
Skipped exon end: 27222651
Mutation start: 27222471
Mutation end: 27222471
Mutation type: Splice_Site
Reference seq: G
Mutation seq: T
AAchange: .
exon_skip_113241_PAAD_TCGA-IB-7651-01.png
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exon_skip_115380_PAAD_TCGA-IB-7651-01.png
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exon_skip_124564_PAAD_TCGA-IB-7651-01.png
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exon_skip_135806_PAAD_TCGA-IB-7651-01.png
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exon_skip_139341_PAAD_TCGA-IB-7651-01.png
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exon_skip_153733_PAAD_TCGA-IB-7651-01.png
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exon_skip_155805_PAAD_TCGA-IB-7651-01.png
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exon_skip_18053_PAAD_TCGA-IB-7651-01.png
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exon_skip_18056_PAAD_TCGA-IB-7651-01.png
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exon_skip_23067_PAAD_TCGA-IB-7651-01.png
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exon_skip_287059_PAAD_TCGA-IB-7651-01.png
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exon_skip_294631_PAAD_TCGA-IB-7651-01.png
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exon_skip_298512_PAAD_TCGA-IB-7651-01.png
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exon_skip_306900_PAAD_TCGA-IB-7651-01.png
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exon_skip_307723_PAAD_TCGA-IB-7651-01.png
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exon_skip_315960_PAAD_TCGA-IB-7651-01.png
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exon_skip_324675_PAAD_TCGA-IB-7651-01.png
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exon_skip_330351_PAAD_TCGA-IB-7651-01.png
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exon_skip_334330_PAAD_TCGA-IB-7651-01.png
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exon_skip_341784_PAAD_TCGA-IB-7651-01.png
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exon_skip_343314_PAAD_TCGA-IB-7651-01.png
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exon_skip_348329_PAAD_TCGA-IB-7651-01.png
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exon_skip_354232_PAAD_TCGA-IB-7651-01.png
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exon_skip_370626_PAAD_TCGA-IB-7651-01.png
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exon_skip_377740_PAAD_TCGA-IB-7651-01.png
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exon_skip_385032_PAAD_TCGA-IB-7651-01.png
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exon_skip_390031_PAAD_TCGA-IB-7651-01.png
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exon_skip_422548_PAAD_TCGA-IB-7651-01.png
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exon_skip_424536_PAAD_TCGA-IB-7651-01.png
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exon_skip_431753_PAAD_TCGA-IB-7651-01.png
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exon_skip_432982_PAAD_TCGA-IB-7651-01.png
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exon_skip_435489_PAAD_TCGA-IB-7651-01.png
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exon_skip_435729_PAAD_TCGA-IB-7651-01.png
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exon_skip_441705_PAAD_TCGA-IB-7651-01.png
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exon_skip_448879_PAAD_TCGA-IB-7651-01.png
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exon_skip_468347_PAAD_TCGA-IB-7651-01.png
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exon_skip_494000_PAAD_TCGA-IB-7651-01.png
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exon_skip_494029_PAAD_TCGA-IB-7651-01.png
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exon_skip_499410_PAAD_TCGA-IB-7651-01.png
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exon_skip_499695_PAAD_TCGA-IB-7651-01.png
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exon_skip_499697_PAAD_TCGA-IB-7651-01.png
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exon_skip_79905_PAAD_TCGA-IB-7651-01.png
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exon_skip_80096_PAAD_TCGA-IB-7651-01.png
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exon_skip_95924_PAAD_TCGA-IB-7651-01.png
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
NCIH2073_LUNG27216626272167252721666827216668Frame_Shift_DelC-p.P94fs
COLO792_SKIN27215661272158272721567327215674Missense_MutationGGAAp.R28K
DETROIT562_UPPER_AERODIGESTIVE_TRACT27215661272158272721567527215675Missense_MutationCTp.R29C
HCC33_LUNG27215661272158272721572227215723Missense_MutationCCAAp.L45M
HCC33_LUNG27215661272158272721572327215723Missense_MutationCAp.L45M
MDAMB175VII_BREAST27215661272158272721581427215814Missense_MutationGAp.R75Q
EB2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE27215661272158272721581427215814Missense_MutationGAp.R75Q
SNU81_LARGE_INTESTINE27215661272158272721582227215822Missense_MutationCAp.L78I
SW900_LUNG27216626272167252721668327216683Missense_MutationCGp.L99V
NCIH1105_LUNG27216626272167252721671127216711Missense_MutationGTp.G108V
NCIH1105_LUNG27216626272167252721671127216712Missense_MutationGCTAp.G108V
YD38_UPPER_AERODIGESTIVE_TRACT27216879272170082721688327216883Missense_MutationTAp.H114Q
LS411N_LARGE_INTESTINE27216879272170082721688727216887Missense_MutationGAp.A116T
COGN278_AUTONOMIC_GANGLIA27216879272170082721689027216890Missense_MutationGTp.A117S
OE33_OESOPHAGUS27216879272170082721692527216925Missense_MutationCAp.S128R
CHLA258_BONE27216879272170082721698627216986Missense_MutationCTp.R149C
UMC11_LUNG27216879272170082721698727216987Missense_MutationGAp.R149H
NCIH1694_LUNG27216879272170082721700327217004Missense_MutationCCAGp.L155V
NCIH1694_LUNG27216879272170082721700427217004Missense_MutationCGp.L155V
WM88_SKIN27218462272185852721857527218575Missense_MutationCTp.A194V
SNU81_LARGE_INTESTINE27218821272188982721888327218883Missense_MutationCAp.F218L
HO1U1_UPPER_AERODIGESTIVE_TRACT27218996272190432721900327219003Missense_MutationCTp.S226F
NCIH647_LUNG27218996272190432721900627219006Missense_MutationGAp.R227Q
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE27218996272190432721902327219023Missense_MutationGAp.A233T
NCIH2342_LUNG27219529272198192721956527219565Missense_MutationGCp.E252Q
PCI6A_UPPER_AERODIGESTIVE_TRACT27219529272198192721967327219674Missense_MutationCTAGp.L288R
MDAMB361_BREAST27219529272198192721980527219805Missense_MutationCTp.R332C
DANG_PANCREAS27220587272207282722062927220629Missense_MutationCGp.R351G
OV7_OVARY27220587272207282722071627220716Missense_MutationGAp.E380K
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE27220587272207282722072227220722Missense_MutationGAp.G382S
MCC26_SKIN27222472272226512722259527222595Missense_MutationCTp.T425M
HCC2108_LUNG27222472272226512722262527222625Missense_MutationGAp.G435E
NCIH82_LUNG27222472272226512722264827222648Missense_MutationATp.N443Y
NCIH2110_LUNG27215661272158272721569327215693Nonsense_MutationCTp.Q35*
NCIH510_LUNG27216626272167252721663327216633Nonsense_MutationGAp.W82*
SW780_URINARY_TRACT27218462272185852721857327218573Nonsense_MutationGAp.W193*
HCC2998_LARGE_INTESTINE27216626272167252721662727216627Splice_SiteGAp.R80H
CAL27_UPPER_AERODIGESTIVE_TRACT27216626272167252721672427216724Splice_SiteACp.R112S

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for PRSS16

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for PRSS16


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for PRSS16


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RelatedDrugs for PRSS16

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PRSS16

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
PRSS16C0036341Schizophrenia2PSYGENET