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![]() | Open reading frame (ORF) annotation in the exon skipping event |
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![]() | Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
![]() | Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for TARBP1 |
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Gene information | Gene symbol | TARBP1 | Gene ID | 6894 |
Gene name | TAR (HIV-1) RNA binding protein 1 | |
Synonyms | TRM3|TRMT3|TRP-185|TRP185 | |
Cytomap | 1q42.2 | |
Type of gene | protein-coding | |
Description | probable methyltransferase TARBP1TAR (HIV) RNA-binding protein 1TAR RNA loop binding proteinTAR RNA-binding protein 1TAR RNA-binding protein of 185 kDatRNA methyltransferase 3 homolog | |
Modification date | 20180523 | |
UniProtAcc | Q13395 | |
Context | PubMed: TARBP1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
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Gene | GO ID | GO term | PubMed ID |
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Exon skipping events across known transcript of Ensembl for TARBP1 from UCSC genome browser |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for TARBP1 |
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Exon skipping events with PSIs in TCGA for TARBP1 |
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Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_38164 | 1 | 234527343:234527491:234528161:234528298:234529107:234529222 | 234528161:234528298 | ENSG00000059588.5 | ENST00000462259.1,ENST00000040877.1,ENST00000483404.1 |
exon_skip_38165 | 1 | 234527343:234527491:234528161:234528298:234529391:234529583 | 234528161:234528298 | ENSG00000059588.5 | ENST00000496673.1 |
exon_skip_38171 | 1 | 234528161:234528298:234529107:234529222:234529391:234529583 | 234529107:234529222 | ENSG00000059588.5 | ENST00000483404.1 |
exon_skip_38172 | 1 | 234528161:234528298:234529107:234529232:234529391:234529583 | 234529107:234529232 | ENSG00000059588.5 | ENST00000462259.1,ENST00000040877.1 |
exon_skip_38174 | 1 | 234529391:234529583:234534127:234534299:234536598:234536648 | 234534127:234534299 | ENSG00000059588.5 | ENST00000462259.1 |
exon_skip_38175 | 1 | 234529391:234529583:234534127:234534299:234536926:234536962 | 234534127:234534299 | ENSG00000059588.5 | ENST00000496673.1,ENST00000040877.1 |
exon_skip_38177 | 1 | 234529391:234529583:234536598:234536694:234536926:234536962 | 234536598:234536694 | ENSG00000059588.5 | ENST00000483404.1 |
exon_skip_38181 | 1 | 234534127:234534299:234536598:234536694:234536926:234536962 | 234536598:234536694 | ENSG00000059588.5 | ENST00000462259.1 |
exon_skip_38183 | 1 | 234536926:234537008:234541057:234541226:234541648:234541739 | 234541057:234541226 | ENSG00000059588.5 | ENST00000468077.1 |
exon_skip_38188 | 1 | 234536926:234537008:234541648:234541845:234546190:234546277 | 234541648:234541845 | ENSG00000059588.5 | ENST00000481183.1,ENST00000040877.1 |
exon_skip_38200 | 1 | 234541648:234541845:234546190:234546277:234553829:234553979 | 234546190:234546277 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38204 | 1 | 234546190:234546277:234553829:234553979:234556447:234556558 | 234553829:234553979 | ENSG00000059588.5 | ENST00000040877.1,ENST00000463793.1 |
exon_skip_38206 | 1 | 234561418:234561539:234563062:234563134:234563321:234563512 | 234563062:234563134 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38207 | 1 | 234563321:234563512:234564881:234565070:234565161:234565423 | 234564881:234565070 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38209 | 1 | 234565832:234566047:234569155:234569317:234573020:234573118 | 234569155:234569317 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38212 | 1 | 234569155:234569317:234573020:234573118:234582548:234582721 | 234573020:234573118 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38215 | 1 | 234582548:234582721:234584225:234584325:234586173:234586312 | 234584225:234584325 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38218 | 1 | 234586173:234586312:234593412:234593502:234594975:234595072 | 234593412:234593502 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38220 | 1 | 234593412:234593502:234594975:234595072:234596006:234596142 | 234594975:234595072 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38222 | 1 | 234596006:234596142:234599582:234599680:234601401:234601454 | 234599582:234599680 | ENSG00000059588.5 | ENST00000040877.1 |
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Exon skipping events with PSIs in GTEx for TARBP1 |
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Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
exon_skip_38164 | 1 | 234527343:234527491:234528161:234528298:234529107:234529222 | 234528161:234528298 | ENSG00000059588.5 | ENST00000040877.1,ENST00000483404.1,ENST00000462259.1 |
exon_skip_38165 | 1 | 234527343:234527491:234528161:234528298:234529391:234529583 | 234528161:234528298 | ENSG00000059588.5 | ENST00000496673.1 |
exon_skip_38171 | 1 | 234528161:234528298:234529107:234529222:234529391:234529583 | 234529107:234529222 | ENSG00000059588.5 | ENST00000483404.1 |
exon_skip_38172 | 1 | 234528161:234528298:234529107:234529232:234529391:234529583 | 234529107:234529232 | ENSG00000059588.5 | ENST00000040877.1,ENST00000462259.1 |
exon_skip_38174 | 1 | 234529391:234529583:234534127:234534299:234536598:234536648 | 234534127:234534299 | ENSG00000059588.5 | ENST00000462259.1 |
exon_skip_38175 | 1 | 234529391:234529583:234534127:234534299:234536926:234536962 | 234534127:234534299 | ENSG00000059588.5 | ENST00000040877.1,ENST00000496673.1 |
exon_skip_38177 | 1 | 234529391:234529583:234536598:234536694:234536926:234536962 | 234536598:234536694 | ENSG00000059588.5 | ENST00000483404.1 |
exon_skip_38181 | 1 | 234534127:234534299:234536598:234536694:234536926:234536962 | 234536598:234536694 | ENSG00000059588.5 | ENST00000462259.1 |
exon_skip_38183 | 1 | 234536926:234537008:234541057:234541226:234541648:234541739 | 234541057:234541226 | ENSG00000059588.5 | ENST00000468077.1 |
exon_skip_38188 | 1 | 234536926:234537008:234541648:234541845:234546190:234546277 | 234541648:234541845 | ENSG00000059588.5 | ENST00000040877.1,ENST00000481183.1 |
exon_skip_38200 | 1 | 234541648:234541845:234546190:234546277:234553829:234553979 | 234546190:234546277 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38204 | 1 | 234546190:234546277:234553829:234553979:234556447:234556558 | 234553829:234553979 | ENSG00000059588.5 | ENST00000040877.1,ENST00000463793.1 |
exon_skip_38206 | 1 | 234561418:234561539:234563062:234563134:234563321:234563512 | 234563062:234563134 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38207 | 1 | 234563321:234563512:234564881:234565070:234565161:234565423 | 234564881:234565070 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38209 | 1 | 234565832:234566047:234569155:234569317:234573020:234573118 | 234569155:234569317 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38212 | 1 | 234569155:234569317:234573020:234573118:234582548:234582721 | 234573020:234573118 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38215 | 1 | 234582548:234582721:234584225:234584325:234586173:234586312 | 234584225:234584325 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38218 | 1 | 234586173:234586312:234593412:234593502:234594975:234595072 | 234593412:234593502 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38220 | 1 | 234593412:234593502:234594975:234595072:234596006:234596142 | 234594975:234595072 | ENSG00000059588.5 | ENST00000040877.1 |
exon_skip_38222 | 1 | 234596006:234596142:234599582:234599680:234601401:234601454 | 234599582:234599680 | ENSG00000059588.5 | ENST00000040877.1 |
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* Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for TARBP1 |
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ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000040877 | 234528161 | 234528298 | Frame-shift |
ENST00000040877 | 234529107 | 234529232 | Frame-shift |
ENST00000040877 | 234534127 | 234534299 | Frame-shift |
ENST00000040877 | 234541648 | 234541845 | Frame-shift |
ENST00000040877 | 234573020 | 234573118 | Frame-shift |
ENST00000040877 | 234584225 | 234584325 | Frame-shift |
ENST00000040877 | 234594975 | 234595072 | Frame-shift |
ENST00000040877 | 234599582 | 234599680 | Frame-shift |
ENST00000040877 | 234546190 | 234546277 | In-frame |
ENST00000040877 | 234553829 | 234553979 | In-frame |
ENST00000040877 | 234563062 | 234563134 | In-frame |
ENST00000040877 | 234564881 | 234565070 | In-frame |
ENST00000040877 | 234569155 | 234569317 | In-frame |
ENST00000040877 | 234593412 | 234593502 | In-frame |
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ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000040877 | 234528161 | 234528298 | Frame-shift |
ENST00000040877 | 234529107 | 234529232 | Frame-shift |
ENST00000040877 | 234534127 | 234534299 | Frame-shift |
ENST00000040877 | 234541648 | 234541845 | Frame-shift |
ENST00000040877 | 234573020 | 234573118 | Frame-shift |
ENST00000040877 | 234584225 | 234584325 | Frame-shift |
ENST00000040877 | 234594975 | 234595072 | Frame-shift |
ENST00000040877 | 234599582 | 234599680 | Frame-shift |
ENST00000040877 | 234546190 | 234546277 | In-frame |
ENST00000040877 | 234553829 | 234553979 | In-frame |
ENST00000040877 | 234563062 | 234563134 | In-frame |
ENST00000040877 | 234564881 | 234565070 | In-frame |
ENST00000040877 | 234569155 | 234569317 | In-frame |
ENST00000040877 | 234593412 | 234593502 | In-frame |
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Infer the effects of exon skipping event on protein functional features for TARBP1 |
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ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000040877 | 5147 | 1621 | 234593412 | 234593502 | 1633 | 1722 | 544 | 574 |
ENST00000040877 | 5147 | 1621 | 234569155 | 234569317 | 2233 | 2394 | 744 | 798 |
ENST00000040877 | 5147 | 1621 | 234564881 | 234565070 | 2872 | 3060 | 957 | 1020 |
ENST00000040877 | 5147 | 1621 | 234563062 | 234563134 | 3252 | 3323 | 1084 | 1107 |
ENST00000040877 | 5147 | 1621 | 234553829 | 234553979 | 3556 | 3705 | 1185 | 1235 |
ENST00000040877 | 5147 | 1621 | 234546190 | 234546277 | 3706 | 3792 | 1235 | 1264 |
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ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000040877 | 5147 | 1621 | 234593412 | 234593502 | 1633 | 1722 | 544 | 574 |
ENST00000040877 | 5147 | 1621 | 234569155 | 234569317 | 2233 | 2394 | 744 | 798 |
ENST00000040877 | 5147 | 1621 | 234564881 | 234565070 | 2872 | 3060 | 957 | 1020 |
ENST00000040877 | 5147 | 1621 | 234563062 | 234563134 | 3252 | 3323 | 1084 | 1107 |
ENST00000040877 | 5147 | 1621 | 234553829 | 234553979 | 3556 | 3705 | 1185 | 1235 |
ENST00000040877 | 5147 | 1621 | 234546190 | 234546277 | 3706 | 3792 | 1235 | 1264 |
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UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q13395 | 544 | 574 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 744 | 798 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 957 | 1020 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 957 | 1020 | 997 | 997 | Natural variant | ID=VAR_030106;Note=F->L;Dbxref=dbSNP:rs12135427 |
Q13395 | 1084 | 1107 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 1185 | 1235 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 1235 | 1264 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
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UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q13395 | 544 | 574 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 744 | 798 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 957 | 1020 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 957 | 1020 | 997 | 997 | Natural variant | ID=VAR_030106;Note=F->L;Dbxref=dbSNP:rs12135427 |
Q13395 | 1084 | 1107 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 1185 | 1235 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
Q13395 | 1235 | 1264 | 1 | 1621 | Chain | ID=PRO_0000273201;Note=Probable methyltransferase TARBP1 |
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SNVs in the skipped exons for TARBP1 |
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Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
LIHC | TCGA-DD-A3A0-01 | exon_skip_38164 exon_skip_38165 | 234528162 | 234528298 | 234528214 | 234528214 | Frame_Shift_Del | T | - | p.S1549fs |
LIHC | TCGA-G3-A3CJ-01 | exon_skip_38204 | 234553830 | 234553979 | 234553860 | 234553860 | Frame_Shift_Del | A | - | p.F1225fs |
LIHC | TCGA-G3-A3CJ-01 | exon_skip_38209 | 234569156 | 234569317 | 234569292 | 234569292 | Frame_Shift_Del | A | - | p.L753fs |
KIRP | TCGA-WN-A9G9-01 | exon_skip_38188 | 234541649 | 234541845 | 234541785 | 234541786 | Frame_Shift_Ins | - | AA | p.S1285fs |
LUAD | TCGA-55-6712-01 | exon_skip_38171 | 234529108 | 234529222 | 234529176 | 234529176 | Nonsense_Mutation | G | A | p.Q1498* |
LUAD | TCGA-55-6712-01 | exon_skip_38172 | 234529108 | 234529232 | 234529176 | 234529176 | Nonsense_Mutation | G | A | p.Q1498* |
STAD | TCGA-BR-4368-01 | exon_skip_38188 | 234541649 | 234541845 | 234541716 | 234541716 | Nonsense_Mutation | C | A | p.E1308* |
LUAD | TCGA-MP-A4TH-01 | exon_skip_38188 | 234541649 | 234541845 | 234541755 | 234541755 | Nonsense_Mutation | T | A | p.K1295* |
BLCA | TCGA-4Z-AA83-01 | exon_skip_38188 | 234541649 | 234541845 | 234541779 | 234541779 | Nonsense_Mutation | G | A | p.R1287* |
SKCM | TCGA-FS-A1ZB-06 | exon_skip_38188 | 234541649 | 234541845 | 234541779 | 234541779 | Nonsense_Mutation | G | A | p.R1287* |
SKCM | TCGA-FS-A1ZB-06 | exon_skip_38188 | 234541649 | 234541845 | 234541779 | 234541779 | Nonsense_Mutation | G | A | p.R1287X |
HNSC | TCGA-CR-6472-01 | exon_skip_38200 | 234546191 | 234546277 | 234546228 | 234546228 | Nonsense_Mutation | G | C | p.S1252* |
SKCM | TCGA-FS-A4F0-06 | exon_skip_38207 | 234564882 | 234565070 | 234564992 | 234564992 | Nonsense_Mutation | G | A | p.Q984* |
SKCM | TCGA-FS-A4F0-06 | exon_skip_38207 | 234564882 | 234565070 | 234564992 | 234564992 | Nonsense_Mutation | G | A | p.Q984X |
CHOL | TCGA-3X-AAV9-01 | exon_skip_38209 | 234569156 | 234569317 | 234569297 | 234569297 | Nonsense_Mutation | G | T | p.C751X |
SKCM | TCGA-D3-A3MR-06 | exon_skip_38174 exon_skip_38175 | 234534128 | 234534299 | 234534127 | 234534127 | Splice_Site | C | T | . |
BRCA | TCGA-B6-A0RT-01 | exon_skip_38207 | 234564882 | 234565070 | 234565071 | 234565071 | Splice_Site | C | A | e17-1 |
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Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
CFPAC1_PANCREAS | 234541649 | 234541845 | 234541677 | 234541678 | In_Frame_Ins | - | GAGGCT | p.1319_1320insLS |
OC316_OVARY | 234529108 | 234529232 | 234529143 | 234529143 | Missense_Mutation | T | C | p.S1509G |
OC316_OVARY | 234529108 | 234529222 | 234529143 | 234529143 | Missense_Mutation | T | C | p.S1509G |
OC314_OVARY | 234529108 | 234529232 | 234529143 | 234529143 | Missense_Mutation | T | C | p.S1509G |
OC314_OVARY | 234529108 | 234529222 | 234529143 | 234529143 | Missense_Mutation | T | C | p.S1509G |
MELJUSO_SKIN | 234529108 | 234529232 | 234529152 | 234529152 | Missense_Mutation | G | T | p.Q1506K |
MELJUSO_SKIN | 234529108 | 234529222 | 234529152 | 234529152 | Missense_Mutation | G | T | p.Q1506K |
SNUC2A_LARGE_INTESTINE | 234534128 | 234534299 | 234534170 | 234534170 | Missense_Mutation | G | A | p.L1401F |
LU139_LUNG | 234534128 | 234534299 | 234534170 | 234534170 | Missense_Mutation | G | A | p.L1401F |
SNUC2B_LARGE_INTESTINE | 234534128 | 234534299 | 234534170 | 234534170 | Missense_Mutation | G | A | p.L1401F |
RERFLCFM_LUNG | 234534128 | 234534299 | 234534296 | 234534296 | Missense_Mutation | T | C | p.I1359V |
H4_CENTRAL_NERVOUS_SYSTEM | 234564882 | 234565070 | 234564915 | 234564915 | Missense_Mutation | T | G | p.K1009N |
HCC1937_MATCHED_NORMAL_TISSUE | 234569156 | 234569317 | 234569230 | 234569230 | Missense_Mutation | T | G | p.N774H |
MCAS_OVARY | 234573021 | 234573118 | 234573024 | 234573024 | Missense_Mutation | A | C | p.N743K |
SNU175_LARGE_INTESTINE | 234573021 | 234573118 | 234573070 | 234573070 | Missense_Mutation | C | A | p.S728I |
NCIH2172_LUNG | 234593413 | 234593502 | 234593456 | 234593456 | Missense_Mutation | C | T | p.R560K |
MFE319_ENDOMETRIUM | 234594976 | 234595072 | 234595014 | 234595014 | Missense_Mutation | A | G | p.C532R |
CALU6_LUNG | 234541649 | 234541845 | 234541779 | 234541779 | Nonsense_Mutation | G | A | p.R1287* |
SNU81_LARGE_INTESTINE | 234599583 | 234599680 | 234599592 | 234599592 | Nonsense_Mutation | C | A | p.E464* |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for TARBP1 |
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Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TARBP1 |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TARBP1 |
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RelatedDrugs for TARBP1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TARBP1 |
![]() (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |