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miRNAs in miRactDB

: miRNA name

Gene in miRactDB

: Gene_Symbol-Gene_ID

miRNA-gene correlation (significant case count, TCGA_t)

: miR-gene-ACC-BLCA-BRCA-CESC-CHOL-COAD-DLBC-ESCA-HNSC-KICH-KIRC-KIRP-LGG-LIHC-LUAD-LUSC-MESO-OV-PAAD-PCPG-PRAD-READ-SARC-SKCM-STAD-TGCT-THCA-THYM-UCEC-UCS-UVM-numN-numP-numNP

miRNA-gene correlation (significant case count, TCGA_n)

: miR-gene-BLCA-BRCA-CESC-CHOL-COAD-ESCA-HNSC-KICH-KIRC-KIRP-LIHC-LUAD-LUSC-PAAD-PCPG-PRAD-READ-STAD-THCA-UCEC-numN-numP-numNP

miRNA-gene correlation (significant case count, CCLE)

: miR-gene-LUNG-LARGE_INTESTINE-HAEMATOPOIETIC_AND_LYMPHOID_TISSUE-URINARY_TRACT-BONE-SKIN-BREAST-LIVER-PLEURA-OVARY-OESOPHAGUS-ENDOMETRIUM-FIBROBLAST-CENTRAL_NERVOUS_SYSTEM-SOFT_TISSUE-PANCREAS-AUTONOMIC_GANGLIA-STOMACH-KIDNEY-UPPER_AERODIGESTIVE_TRACT-THYROID-SALIVARY_GLAND-BILIARY_TRACT-PROSTATE-SMALL_INTESTINE-numN-numP-numNP

miRNA-gene correlation (significant case count, GTEx)

: miR-gene-Adipose Tissue-Adrenal Gland-Bladder-Blood-Blood Vessel-Brain-Breast-Cervix Uteri-Colon-Esophagus-Fallopian Tube-Heart-Kidney-Liver-Lung-Muscle-Nerve-Ovary-Pancreas-Pituitary-Prostate-Salivary Gland-Skin-Small Intestine-Spleen-Stomach-Testis-Thyroid-Uterus-Vagina-numN-numP-numNP

miRNA-host gene correlation

: pair-miR-host_gene-chromosome-start_miR-end_miR-strand_miR-start_gene-end_gene-strand_gene-gene_type-miR_simp-inTCGA-coverage-isPositive-isConserved-rdistance-cover10

Evidence for indirect activation through the double-negative loop

: pairs-coverage-miRs-miRs_full-gene-intermediate_genes

Evidence for co-transcription of both miRNA and gene

: pairs-coverage-miRs-miRs_full-gene-intermediate_genes

Univariate cox regression for miRNA

: HR(95% CI)-Pval-GeneName-CancerType

Univariate cox regression for gene

: HR(95% CI)-Pval-GeneName-CancerType

Multivariate cox regression for miRNA-gene pair

: HR(95% CI)-Pval-GeneName-CancerType

miRNA binding site in the coding region

: Gene_ID-miRNA_family_ID-MSA_start-MSA_end-Group_type-miR-seed2bp_seq-mir_seq

miRNA binding site in the promoter regions (TSS+/-2kb) of plus strand

: Gene_ID-miRNA_family_ID-MSA_start-MSA_end-Group_type-miR-seed2bp_seq-mir_seq

miRNA binding site in the promoter regions (TSS+/-2kb) of minus strand

: Gene_ID-miRNA_family_ID-MSA_start-MSA_end-Group_type-miR-seed2bp_seq-mir_seq

miRNA binding site in 3'-UTR by TargetScanHuman

: Gene_Symbol-miRNA-Site_Type-context_score-context_score_percentile-weighted_context_score-weighted_context_score_percentile-miRNA1-miRNA2-pairs