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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in RPSMAP, MSBB, and Mayo

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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3'-UTR located exon skipping events lost miRNA binding sites

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SNVs in the skipped exons with depth of coverage

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AD stage-associated exon skipping events

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Correlation with RNA binding proteins (RBPs)

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Related drugs with this gene

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Related diseases with this gene

Gene summary for DOCK4

check button Gene summary
Gene informationGene symbol

DOCK4

Gene ID

9732

Gene namededicator of cytokinesis 4
Synonyms-
Cytomap

7q31.1

Type of geneprotein-coding
Descriptiondedicator of cytokinesis protein 4
Modification date20200327
UniProtAcc

A0A024R749,

A0A2X0SFR8,

A0A590UJ51,

A0A590UJM5,

A4D0S8,

C9J637,

C9J7D9,

C9JDB3,

F5GXW1,

F8WES4,

H0Y599,

H0Y7H7,

Q149N2,

Q149N5,

Q149N6,

Q75MU6,

Q8N1I0,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Gene structures and expression levels for DOCK4

check buttonSkipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

ENSG00000128512
check button Differentially expressed gene analysis across multiple brain tissues between AD and control.
Tissue typeDEG directionBase mean exp.log2FC(AD/control)P-valueAdj. p-value

check button Differentially expressed isoform analysis across multiple brain tissues between AD and control.
gencode gene structure
Tissue typeDEG directionENSTTranscript info.Base mean exp.log2FC(AD/control)P-valueAdjc. p-value
DLPFCDOWNENST00000417165.1DOCK4-201:protein_coding:DOCK43.147026e+00-1.018941e+001.688398e-052.056293e-03
DLPFCDOWNENST00000450156.6DOCK4-208:protein_coding:DOCK45.246731e+01-1.818944e+006.200670e-055.106157e-03
DLPFCDOWNENST00000437129.5DOCK4-205:protein_coding:DOCK45.009620e+00-9.187960e-011.497197e-034.386409e-02
PCCDOWNENST00000417165.1DOCK4-201:protein_coding:DOCK47.397035e+00-8.399886e-013.430992e-052.983176e-03
PCCDOWNENST00000450156.6DOCK4-208:protein_coding:DOCK41.567493e+02-1.251598e+001.969579e-033.875267e-02
PGUPENST00000492436.5DOCK4-213:lncRNA:DOCK44.876417e+003.142196e+003.318780e-046.590860e-03
CBUPENST00000664131.1DOCK4-219:protein_coding:DOCK46.248209e+011.480601e+003.203753e-088.092811e-07
CBUPENST00000428053.5DOCK4-203:nonsense_mediated_decay:DOCK41.839291e+002.514004e+004.817385e-081.142789e-06
CBDOWNENST00000658652.1DOCK4-217:protein_coding:DOCK48.479763e+02-1.081380e+004.450664e-053.724670e-04
CBUPENST00000476846.5DOCK4-211:lncRNA:DOCK41.767019e+018.000602e-011.428205e-041.003489e-03
TCDOWNENST00000417165.1DOCK4-201:protein_coding:DOCK44.086545e+00-1.085479e+001.308076e-042.002325e-03
TCDOWNENST00000437129.5DOCK4-205:protein_coding:DOCK42.673507e+00-1.805361e+004.978469e-033.342534e-02

check button Landscape of isoform expressions across multiple brain tissues between AD and control.
gencode gene structure

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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for DOCK4

check button Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap).
boxplot

check button All exon skipping events in AD cohorts.
Exon skip IDchrExons involved in exon skippingSkipped exon
exon_skip_128558chr7111726824:111728720:111732226:111732287:111736917:111736989111732226:111732287
exon_skip_13280chr7111732226:111732287:111735054:111735167:111736917:111736987111735054:111735167
exon_skip_135336chr7111769657:111769677:111778276:111778369:111783857:111783952111778276:111778369
exon_skip_152090chr7111778276:111778369:111782864:111782924:111783857:111783952111782864:111782924
exon_skip_162250chr7111728421:111728720:111732226:111732287:111735054:111735167111732226:111732287
exon_skip_162545chr7111739396:111739477:111741094:111741214:111741540:111741661111741094:111741214
exon_skip_163020chr7111872467:111872564:111877030:111877186:111895612:111895718111877030:111877186
exon_skip_166464chr7111739134:111739243:111739396:111739477:111741094:111741214111739396:111739477
exon_skip_185988chr7111834588:111834686:111840763:111840870:111844763:111844897111840763:111840870
exon_skip_204856chr7111769657:111769677:111778276:111778369:111782864:111782924111778276:111778369
exon_skip_215075chr7111783857:111783952:111784097:111784123:111784384:111784426111784097:111784123
exon_skip_228424chr7111783857:111783952:111784097:111784123:111788662:111788747111784097:111784123
exon_skip_280157chr7111741540:111741661:111742013:111742132:111746334:111746417111742013:111742132
exon_skip_285441chr7111998448:111998503:112000494:112000534:112004048:112004131112000494:112000534
exon_skip_4311chr7111732226:111732287:111736917:111736989:111739134:111739243111736917:111736989
exon_skip_60566chr7111747267:111747443:111755515:111755601:111758624:111758790111755515:111755601
exon_skip_64336chr7111834588:111834686:111844763:111844897:111846999:111847126111844763:111844897
exon_skip_82516chr7111728421:111728720:111736917:111736989:111739134:111739243111736917:111736989
exon_skip_92123chr7111728421:111728720:111732226:111732287:111736917:111736989111732226:111732287
exon_skip_95099chr7111732226:111732287:111735054:111735167:111736917:111736989111735054:111735167

check button Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control.
psi tcga
Exon skipping informationTissue typeAvg(PSIs) in ADAvg(PSIs) in controlDifference (PSI)Adj. p-value
exon_skip_228424MSBB_PG3.188618e-015.017778e-01-1.829160e-011.256523e-04
exon_skip_286199Mayo_CB7.889024e-018.980282e-01-1.091257e-013.992646e-08
exon_skip_95099Mayo_CB5.206173e-016.794444e-01-1.588272e-014.717891e-09


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Open reading frame (ORF) annotation in the exon skipping event for DOCK4

check button Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000437633111732226111732287Frame-shift
ENST00000437633111739396111739477Frame-shift
ENST00000437633111741094111741214Frame-shift
ENST00000437633111778276111778369Frame-shift
ENST00000437633111782864111782924Frame-shift
ENST00000437633111877030111877186Frame-shift
ENST00000437633112000494112000534Frame-shift
ENST00000437633111735054111735167In-frame
ENST00000437633111742013111742132In-frame
ENST00000437633111755515111755601In-frame
ENST00000437633111844763111844897In-frame

check button Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000437633111732226111732287Frame-shift
ENST00000437633111741094111741214Frame-shift
ENST00000437633111778276111778369Frame-shift
ENST00000437633111782864111782924Frame-shift
ENST00000437633111877030111877186Frame-shift
ENST00000437633112000494112000534Frame-shift
ENST00000437633111735054111735167In-frame
ENST00000437633111755515111755601In-frame
ENST00000437633111844763111844897In-frame

check button Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000437633111732226111732287Frame-shift
ENST00000437633111739396111739477Frame-shift
ENST00000437633111741094111741214Frame-shift
ENST00000437633111778276111778369Frame-shift
ENST00000437633111782864111782924Frame-shift
ENST00000437633111877030111877186Frame-shift
ENST00000437633112000494112000534Frame-shift
ENST00000437633111735054111735167In-frame
ENST00000437633111742013111742132In-frame
ENST00000437633111755515111755601In-frame
ENST00000437633111844763111844897In-frame

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Infer the effects of exon skipping event on protein functional features for DOCK4

p-ENSG00000128512_img4.png
boxplot

check button Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000004376336229196611184476311184489728592992867911
ENST00000437633622919661117555151117556014560464514341462
ENST00000437633622919661117420131117421324908502615501589
ENST00000437633622919661117350541117351675536564817591797

check button Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000004376336229196611184476311184489728592992867911
ENST00000437633622919661117555151117556014560464514341462
ENST00000437633622919661117350541117351675536564817591797

check button Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000004376336229196611184476311184489728592992867911
ENST00000437633622919661117555151117556014560464514341462
ENST00000437633622919661117420131117421324908502615501589
ENST00000437633622919661117350541117351675536564817591797

check button Lost protein functional features of individual exon skipping events in ROSMAP.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N1I086791111687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I086791111966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01434146211687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I01434146211966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01434146211901596DomainNote=DHR-2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00984
Q8N1I01550158911687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I01550158911966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01550158911901596DomainNote=DHR-2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00984
Q8N1I01550158915701570Natural variantID=VAR_057519;Note=R->K;Dbxref=dbSNP:rs3757650
Q8N1I01550158915801580Natural variantID=VAR_057520;Note=F->L;Dbxref=dbSNP:rs3757651
Q8N1I01759179717601797Alternative sequenceID=VSP_007706;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9872452;Dbxref=PMID:9872452
Q8N1I01759179711966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01759179716421863Compositional biasNote=Ser-rich
Q8N1I01759179717691769Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P59764
Q8N1I01759179717881794MotifNote=SH3-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255

check button Lost protein functional features of individual exon skipping events in MSBB.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N1I086791111687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I086791111966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01434146211687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I01434146211966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01434146211901596DomainNote=DHR-2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00984
Q8N1I01759179717601797Alternative sequenceID=VSP_007706;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9872452;Dbxref=PMID:9872452
Q8N1I01759179711966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01759179716421863Compositional biasNote=Ser-rich
Q8N1I01759179717691769Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P59764
Q8N1I01759179717881794MotifNote=SH3-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255

check button Lost protein functional features of individual exon skipping events in Mayo.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N1I086791111687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I086791111966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01434146211687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I01434146211966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01434146211901596DomainNote=DHR-2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00984
Q8N1I01550158911687Alternative sequenceID=VSP_007701;Note=In isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039
Q8N1I01550158911966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01550158911901596DomainNote=DHR-2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00984
Q8N1I01550158915701570Natural variantID=VAR_057519;Note=R->K;Dbxref=dbSNP:rs3757650
Q8N1I01550158915801580Natural variantID=VAR_057520;Note=F->L;Dbxref=dbSNP:rs3757651
Q8N1I01759179717601797Alternative sequenceID=VSP_007706;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9872452;Dbxref=PMID:9872452
Q8N1I01759179711966ChainID=PRO_0000189990;Note=Dedicator of cytokinesis protein 4
Q8N1I01759179716421863Compositional biasNote=Ser-rich
Q8N1I01759179717691769Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P59764
Q8N1I01759179717881794MotifNote=SH3-binding;Ontology_term=ECO:0000255;evidence=ECO:0000255


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3'-UTR located exon skipping events that lost miRNA binding sites in DOCK4

check button 3'-UTR exon skipping evnets lost miRNA binding.
Tissue typeENSTExon skip startExon skip endmicroRNABinding site by TargetScanBinding type by TargetScanBdinding site by miRandaScore of miRandaEnergy by miRanda

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SNVs in the skipped exons for DOCK4

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Depth of Coverage in the skipped exon of the mutated samples.

check button - Sashimi plot in the skipped exon of the mutated samples.

check button - Non-synonymous mutations located in the skipped exons.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

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AD stage-associated exon skippint events for DOCK4

check button Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR).
AD stage infoCohortTissueSE idCoefficient P-valueChromosomeStrandE1 startE1 endSkipped startSkipped endE2 startE2 end
CDRMSBBIFGexon_skip_163020-5.402441e-013.000494e-03chr7-111872467111872564111877030111877186111895612111895718

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for DOCK4

check button sQTL information located at the skipped exons.
Tissue typeExon skip IDSNP idLocationP-valueFDR

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Correlation with RNA binding proteins (RBPs) for DOCK4

check button Correlated RBP and related information.
Tissue typeRBP nameExon skip IDCorrelation coeifficientP-value
CBELAVL1exon_skip_286199-4.048047e-012.102960e-07
CBRBM6exon_skip_286199-4.630948e-011.665554e-09
CBCNOT4exon_skip_286199-5.031970e-013.377487e-11
CBMATR3exon_skip_286199-4.008680e-012.824383e-07
CBPCBP1exon_skip_286199-4.351110e-011.904538e-08
CBPCBP4exon_skip_2861995.480859e-012.252941e-13
CBTRA2Aexon_skip_286199-5.429627e-014.145741e-13
CBSNRPAexon_skip_286199-4.718520e-017.418459e-10
CBFUBP1exon_skip_286199-5.319145e-011.491850e-12
CBKHSRPexon_skip_286199-4.150468e-019.588714e-08
CBRBM45exon_skip_2861995.650245e-012.781277e-14
CBPTBP1exon_skip_286199-4.839170e-012.343565e-10
CBHNRNPLexon_skip_286199-4.009334e-012.810663e-07
CBRBM6exon_skip_95099-4.995296e-014.928216e-11
CBCNOT4exon_skip_95099-5.155159e-019.181080e-12
CBPCBP1exon_skip_95099-4.397559e-011.290273e-08
CBPCBP4exon_skip_950994.368636e-011.645436e-08
CBTRA2Aexon_skip_95099-5.520939e-011.388018e-13
CBRBM23exon_skip_95099-4.192427e-016.897846e-08
CBRALYLexon_skip_2284245.179341e-013.480898e-11
CBHNRNPA2B1exon_skip_285441-4.059663e-011.368995e-06
CBPABPC4exon_skip_2854414.391622e-011.381126e-07
FLMSI1exon_skip_228424-5.123599e-019.440270e-12
FLELAVL4exon_skip_2284246.329982e-019.860736e-19
FLRALYLexon_skip_2284245.625748e-012.575189e-14
HCCMSI1exon_skip_950995.403085e-015.121963e-22
HCCRBM6exon_skip_950995.217804e-012.144930e-20
HCCSRSF11exon_skip_950994.442459e-011.388922e-14
HCCRBM5exon_skip_950994.944300e-013.561423e-18
HCCPCBP4exon_skip_950995.775093e-011.357353e-25
HCCSRSF5exon_skip_950994.826498e-012.807023e-17
HCCDAZAP1exon_skip_228424-6.420029e-019.070463e-33
HCCRBMS3exon_skip_228424-5.244498e-011.758294e-20
HCCMSI1exon_skip_228424-6.992196e-016.026471e-41
HCCZNF326exon_skip_228424-6.491616e-011.072889e-33
HCCRBM6exon_skip_228424-7.065138e-013.946427e-42
HCCPCBP1exon_skip_228424-4.663054e-015.552627e-16
HCCRC3H1exon_skip_228424-4.095129e-012.426628e-12
IFGPCBP4exon_skip_950994.063527e-013.189312e-02
IFGDAZAP1exon_skip_228424-4.503976e-011.616651e-02
IFGELAVL4exon_skip_2284245.784358e-011.262690e-03
IFGZNF326exon_skip_228424-4.644377e-011.278012e-02
IFGRBM6exon_skip_228424-4.126596e-012.908431e-02
IFGRALYLexon_skip_2284245.381563e-013.136843e-03
PCCPCBP4exon_skip_950994.577574e-013.612607e-12
PCCRBMS3exon_skip_228424-4.163730e-019.553333e-10
PCCMSI1exon_skip_228424-6.034193e-014.005028e-21
PCCELAVL4exon_skip_2284245.064006e-012.333908e-14
PCCZNF326exon_skip_228424-4.416269e-016.600632e-11
PCCRBM6exon_skip_228424-4.960315e-019.345270e-14
PCCRALYLexon_skip_2284244.757862e-011.230191e-12
PGMSI1exon_skip_228424-5.251789e-012.703956e-13
PGELAVL4exon_skip_2284246.528111e-018.964465e-22
PGPCBP1exon_skip_2284245.115250e-011.382726e-12
PGRALYLexon_skip_2284245.673620e-011.070255e-15
STGMSI1exon_skip_228424-4.285141e-012.148511e-04
STGELAVL4exon_skip_2284244.064806e-014.799886e-04
STGRALYLexon_skip_2284244.178790e-013.188731e-04
TCMSI1exon_skip_132804.176255e-015.823612e-08
TCENOX1exon_skip_13280-4.146509e-017.382831e-08
TCNUP42exon_skip_13280-6.394296e-012.614131e-19
TCMSI1exon_skip_228424-4.234426e-017.425145e-08
TCELAVL4exon_skip_2284248.088118e-011.032680e-35
TCRBM6exon_skip_228424-4.117642e-011.816242e-07
TCPCBP1exon_skip_2284244.129431e-011.661970e-07
TCRALYLexon_skip_2284248.207473e-011.445491e-37
TCPTBP3exon_skip_2284245.561385e-011.796014e-13

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RelatedDrugs for DOCK4

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for DOCK4

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource