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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for BCAR3 |
Gene summary |
Gene information | Gene symbol | BCAR3 | Gene ID | 8412 |
Gene name | BCAR3 adaptor protein, NSP family member | |
Synonyms | AND-34|NSP2|SH2D3B | |
Cytomap | 1p22.1 | |
Type of gene | protein-coding | |
Description | breast cancer anti-estrogen resistance protein 3BCAR3, NSP family adaptor proteinSH2 domain-containing protein 3Bbreast cancer anti-estrogen resistance 3breast cancer antiestrogen resistance 3 proteindJ1033H22.2 (breast cancer anti-estrogen resistanc | |
Modification date | 20200313 | |
UniProtAcc | O75815, | |
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for BCAR3 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for BCAR3 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for BCAR3 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000370244 | 93706092 | 93706142 | 3UTR-3UTR |
ENST00000260502 | 93592265 | 93592393 | In-frame |
ENST00000370243 | 93592265 | 93592393 | In-frame |
ENST00000370244 | 93592265 | 93592393 | In-frame |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000370244 | 93706092 | 93706142 | 3UTR-3UTR |
ENST00000260502 | 93642304 | 93642343 | Frame-shift |
ENST00000370243 | 93642304 | 93642343 | Frame-shift |
ENST00000370244 | 93642304 | 93642343 | Frame-shift |
ENST00000260502 | 93592265 | 93592393 | In-frame |
ENST00000370243 | 93592265 | 93592393 | In-frame |
ENST00000370244 | 93592265 | 93592393 | In-frame |
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Infer the effects of exon skipping event on protein functional features for BCAR3 |
p-ENSG00000137936_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000260502 | 3188 | 825 | 93592265 | 93592393 | 601 | 728 | 119 | 161 |
ENST00000370243 | 3217 | 825 | 93592265 | 93592393 | 633 | 760 | 119 | 161 |
ENST00000370244 | 3234 | 825 | 93592265 | 93592393 | 647 | 774 | 119 | 161 |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000260502 | 3188 | 825 | 93592265 | 93592393 | 601 | 728 | 119 | 161 |
ENST00000370243 | 3217 | 825 | 93592265 | 93592393 | 633 | 760 | 119 | 161 |
ENST00000370244 | 3234 | 825 | 93592265 | 93592393 | 647 | 774 | 119 | 161 |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
O75815 | 119 | 161 | 1 | 324 | Alternative sequence | ID=VSP_017814;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12975309;Dbxref=PMID:12975309 |
O75815 | 119 | 161 | 1 | 324 | Alternative sequence | ID=VSP_017814;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12975309;Dbxref=PMID:12975309 |
O75815 | 119 | 161 | 1 | 324 | Alternative sequence | ID=VSP_017814;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12975309;Dbxref=PMID:12975309 |
O75815 | 119 | 161 | 2 | 825 | Chain | ID=PRO_0000230284;Note=Breast cancer anti-estrogen resistance protein 3 |
O75815 | 119 | 161 | 2 | 825 | Chain | ID=PRO_0000230284;Note=Breast cancer anti-estrogen resistance protein 3 |
O75815 | 119 | 161 | 2 | 825 | Chain | ID=PRO_0000230284;Note=Breast cancer anti-estrogen resistance protein 3 |
O75815 | 119 | 161 | 154 | 253 | Domain | Note=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191 |
O75815 | 119 | 161 | 154 | 253 | Domain | Note=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191 |
O75815 | 119 | 161 | 154 | 253 | Domain | Note=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191 |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
O75815 | 119 | 161 | 1 | 324 | Alternative sequence | ID=VSP_017814;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12975309;Dbxref=PMID:12975309 |
O75815 | 119 | 161 | 1 | 324 | Alternative sequence | ID=VSP_017814;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12975309;Dbxref=PMID:12975309 |
O75815 | 119 | 161 | 1 | 324 | Alternative sequence | ID=VSP_017814;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12975309;Dbxref=PMID:12975309 |
O75815 | 119 | 161 | 2 | 825 | Chain | ID=PRO_0000230284;Note=Breast cancer anti-estrogen resistance protein 3 |
O75815 | 119 | 161 | 2 | 825 | Chain | ID=PRO_0000230284;Note=Breast cancer anti-estrogen resistance protein 3 |
O75815 | 119 | 161 | 2 | 825 | Chain | ID=PRO_0000230284;Note=Breast cancer anti-estrogen resistance protein 3 |
O75815 | 119 | 161 | 154 | 253 | Domain | Note=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191 |
O75815 | 119 | 161 | 154 | 253 | Domain | Note=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191 |
O75815 | 119 | 161 | 154 | 253 | Domain | Note=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191 |
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3'-UTR located exon skipping events that lost miRNA binding sites in BCAR3 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000370244 | 93706092 | 93706142 | hsa-miR-4750-3p | chr1:93706124-93706131 | 8mer-1a | chr1:93706117-93706139 | 165.00 | -16.35 |
Mayo | ENST00000370244 | 93706092 | 93706142 | hsa-miR-452-3p | chr1:93706128-93706135 | 8mer-1a | chr1:93706117-93706139 | 165.00 | -16.35 |
ROSMAP | ENST00000370244 | 93706092 | 93706142 | hsa-miR-4750-3p | chr1:93706124-93706131 | 8mer-1a | chr1:93706117-93706139 | 165.00 | -16.35 |
ROSMAP | ENST00000370244 | 93706092 | 93706142 | hsa-miR-452-3p | chr1:93706128-93706135 | 8mer-1a | chr1:93706117-93706139 | 165.00 | -16.35 |
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SNVs in the skipped exons for BCAR3 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for BCAR3 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for BCAR3 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for BCAR3 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for BCAR3 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BCAR3 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |