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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for CAB39L |
Gene summary |
Gene information | Gene symbol | CAB39L | Gene ID | 81617 |
Gene name | calcium binding protein 39 like | |
Synonyms | MO25-BETA|MO2L|bA103J18.3 | |
Cytomap | 13q14.2 | |
Type of gene | protein-coding | |
Description | calcium-binding protein 39-likeMO25betaU937-associated antigenantigen MLAA-34mo25-like proteinsarcoma antigen NY-SAR-79 | |
Modification date | 20200313 | |
UniProtAcc | ||
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for CAB39L |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
PG | UP | ENST00000425242.5 | CAB39L-208:protein_coding:CAB39L | 7.992049e+00 | 2.580869e+00 | 2.494189e-03 | 2.791557e-02 |
PG | UP | ENST00000347776.9 | CAB39L-201:protein_coding:CAB39L | 4.932393e+00 | 5.497327e+00 | 4.263265e-03 | 4.085344e-02 |
CB | UP | ENST00000410043.5 | CAB39L-206:protein_coding:CAB39L | 1.989379e+00 | 2.168406e+00 | 3.044268e-05 | 2.699024e-04 |
TC | UP | ENST00000355854.8 | CAB39L-202:protein_coding:CAB39L | 1.016158e+03 | 1.102047e+00 | 1.538185e-15 | 1.373938e-12 |
TC | UP | ENST00000610540.4 | CAB39L-212:protein_coding:CAB39L | 2.429841e+01 | 1.038842e+00 | 5.785662e-03 | 3.736221e-02 |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for CAB39L |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_132713 | chr13 | 49331947:49332090:49339677:49339742:49350744:49350912 | 49339677:49339742 |
exon_skip_181336 | chr13 | 49382800:49382941:49401133:49401270:49433318:49433390 | 49401133:49401270 |
exon_skip_18757 | chr13 | 49344179:49344238:49350744:49350912:49359714:49359832 | 49350744:49350912 |
exon_skip_212413 | chr13 | 49382800:49382941:49401133:49401270:49401395:49401525 | 49401133:49401270 |
exon_skip_244562 | chr13 | 49339677:49339742:49344179:49344238:49350744:49350912 | 49344179:49344238 |
exon_skip_26352 | chr13 | 49310652:49310993:49331947:49332090:49339677:49339742 | 49331947:49332090 |
exon_skip_280840 | chr13 | 49359724:49359832:49376967:49377131:49382800:49382941 | 49376967:49377131 |
exon_skip_284508 | chr13 | 49331947:49332090:49339677:49339742:49344179:49344238 | 49339677:49339742 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for CAB39L |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000410043 | 49401133 | 49401270 | 3UTR-3UTR |
ENST00000610540 | 49401133 | 49401270 | 3UTR-3UTR |
ENST00000347776 | 49339677 | 49339742 | In-frame |
ENST00000355854 | 49339677 | 49339742 | In-frame |
ENST00000409308 | 49339677 | 49339742 | In-frame |
ENST00000410043 | 49339677 | 49339742 | In-frame |
ENST00000610540 | 49339677 | 49339742 | In-frame |
ENST00000347776 | 49344179 | 49344238 | In-frame |
ENST00000355854 | 49344179 | 49344238 | In-frame |
ENST00000409308 | 49344179 | 49344238 | In-frame |
ENST00000410043 | 49344179 | 49344238 | In-frame |
ENST00000610540 | 49344179 | 49344238 | In-frame |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000410043 | 49401133 | 49401270 | 3UTR-3UTR |
ENST00000610540 | 49401133 | 49401270 | 3UTR-3UTR |
ENST00000347776 | 49339677 | 49339742 | In-frame |
ENST00000355854 | 49339677 | 49339742 | In-frame |
ENST00000409308 | 49339677 | 49339742 | In-frame |
ENST00000410043 | 49339677 | 49339742 | In-frame |
ENST00000610540 | 49339677 | 49339742 | In-frame |
ENST00000347776 | 49344179 | 49344238 | In-frame |
ENST00000355854 | 49344179 | 49344238 | In-frame |
ENST00000409308 | 49344179 | 49344238 | In-frame |
ENST00000410043 | 49344179 | 49344238 | In-frame |
ENST00000610540 | 49344179 | 49344238 | In-frame |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000410043 | 49401133 | 49401270 | 3UTR-3UTR |
ENST00000610540 | 49401133 | 49401270 | 3UTR-3UTR |
ENST00000347776 | 49350744 | 49350912 | Frame-shift |
ENST00000355854 | 49350744 | 49350912 | Frame-shift |
ENST00000409308 | 49350744 | 49350912 | Frame-shift |
ENST00000410043 | 49350744 | 49350912 | Frame-shift |
ENST00000610540 | 49350744 | 49350912 | Frame-shift |
ENST00000347776 | 49331947 | 49332090 | In-frame |
ENST00000355854 | 49331947 | 49332090 | In-frame |
ENST00000409308 | 49331947 | 49332090 | In-frame |
ENST00000410043 | 49331947 | 49332090 | In-frame |
ENST00000610540 | 49331947 | 49332090 | In-frame |
ENST00000347776 | 49339677 | 49339742 | In-frame |
ENST00000355854 | 49339677 | 49339742 | In-frame |
ENST00000409308 | 49339677 | 49339742 | In-frame |
ENST00000410043 | 49339677 | 49339742 | In-frame |
ENST00000610540 | 49339677 | 49339742 | In-frame |
ENST00000347776 | 49376967 | 49377131 | In-frame |
ENST00000355854 | 49376967 | 49377131 | In-frame |
ENST00000409308 | 49376967 | 49377131 | In-frame |
ENST00000410043 | 49376967 | 49377131 | In-frame |
ENST00000610540 | 49376967 | 49377131 | In-frame |
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Infer the effects of exon skipping event on protein functional features for CAB39L |
p-ENSG00000102547_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000347776 | 3378 | 337 | 49344179 | 49344238 | 753 | 811 | 188 | 207 |
ENST00000355854 | 3693 | 337 | 49344179 | 49344238 | 1063 | 1121 | 188 | 207 |
ENST00000409308 | 2433 | 337 | 49344179 | 49344238 | 951 | 1009 | 188 | 207 |
ENST00000410043 | 1644 | 337 | 49344179 | 49344238 | 1016 | 1074 | 188 | 207 |
ENST00000610540 | 3709 | 337 | 49344179 | 49344238 | 1084 | 1142 | 188 | 207 |
ENST00000347776 | 3378 | 337 | 49339677 | 49339742 | 813 | 877 | 208 | 229 |
ENST00000355854 | 3693 | 337 | 49339677 | 49339742 | 1123 | 1187 | 208 | 229 |
ENST00000409308 | 2433 | 337 | 49339677 | 49339742 | 1011 | 1075 | 208 | 229 |
ENST00000410043 | 1644 | 337 | 49339677 | 49339742 | 1076 | 1140 | 208 | 229 |
ENST00000610540 | 3709 | 337 | 49339677 | 49339742 | 1144 | 1208 | 208 | 229 |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000347776 | 3378 | 337 | 49344179 | 49344238 | 753 | 811 | 188 | 207 |
ENST00000355854 | 3693 | 337 | 49344179 | 49344238 | 1063 | 1121 | 188 | 207 |
ENST00000409308 | 2433 | 337 | 49344179 | 49344238 | 951 | 1009 | 188 | 207 |
ENST00000410043 | 1644 | 337 | 49344179 | 49344238 | 1016 | 1074 | 188 | 207 |
ENST00000610540 | 3709 | 337 | 49344179 | 49344238 | 1084 | 1142 | 188 | 207 |
ENST00000347776 | 3378 | 337 | 49339677 | 49339742 | 813 | 877 | 208 | 229 |
ENST00000355854 | 3693 | 337 | 49339677 | 49339742 | 1123 | 1187 | 208 | 229 |
ENST00000409308 | 2433 | 337 | 49339677 | 49339742 | 1011 | 1075 | 208 | 229 |
ENST00000410043 | 1644 | 337 | 49339677 | 49339742 | 1076 | 1140 | 208 | 229 |
ENST00000610540 | 3709 | 337 | 49339677 | 49339742 | 1144 | 1208 | 208 | 229 |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000347776 | 3378 | 337 | 49376967 | 49377131 | 300 | 463 | 37 | 91 |
ENST00000355854 | 3693 | 337 | 49376967 | 49377131 | 610 | 773 | 37 | 91 |
ENST00000409308 | 2433 | 337 | 49376967 | 49377131 | 498 | 661 | 37 | 91 |
ENST00000410043 | 1644 | 337 | 49376967 | 49377131 | 563 | 726 | 37 | 91 |
ENST00000610540 | 3709 | 337 | 49376967 | 49377131 | 631 | 794 | 37 | 91 |
ENST00000347776 | 3378 | 337 | 49339677 | 49339742 | 813 | 877 | 208 | 229 |
ENST00000355854 | 3693 | 337 | 49339677 | 49339742 | 1123 | 1187 | 208 | 229 |
ENST00000409308 | 2433 | 337 | 49339677 | 49339742 | 1011 | 1075 | 208 | 229 |
ENST00000410043 | 1644 | 337 | 49339677 | 49339742 | 1076 | 1140 | 208 | 229 |
ENST00000610540 | 3709 | 337 | 49339677 | 49339742 | 1144 | 1208 | 208 | 229 |
ENST00000347776 | 3378 | 337 | 49331947 | 49332090 | 879 | 1021 | 230 | 277 |
ENST00000355854 | 3693 | 337 | 49331947 | 49332090 | 1189 | 1331 | 230 | 277 |
ENST00000409308 | 2433 | 337 | 49331947 | 49332090 | 1077 | 1219 | 230 | 277 |
ENST00000410043 | 1644 | 337 | 49331947 | 49332090 | 1142 | 1284 | 230 | 277 |
ENST00000610540 | 3709 | 337 | 49331947 | 49332090 | 1210 | 1352 | 230 | 277 |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 177 | 192 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 195 | 204 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 188 | 207 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q9H9S4 | 37 | 91 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 37 | 91 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 37 | 91 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 37 | 91 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 37 | 91 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 37 | 91 | 38 | 53 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 38 | 53 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 38 | 53 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 38 | 53 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 38 | 53 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 66 | 76 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 66 | 76 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 66 | 76 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 66 | 76 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 66 | 76 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 78 | 84 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 78 | 84 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 78 | 84 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 78 | 84 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 78 | 84 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 91 | 105 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 91 | 105 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 91 | 105 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 91 | 105 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 37 | 91 | 91 | 105 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 206 | 217 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 208 | 229 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 230 | 277 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 230 | 277 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 230 | 277 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 230 | 277 | 1 | 337 | Chain | ID=PRO_0000209826;Note=Calcium-binding protein 39-like |
Q9H9S4 | 230 | 277 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 222 | 237 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 239 | 241 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 239 | 241 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 239 | 241 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 239 | 241 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 239 | 241 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 242 | 248 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 242 | 248 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 242 | 248 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 242 | 248 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 242 | 248 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 252 | 261 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 252 | 261 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 252 | 261 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 252 | 261 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 252 | 261 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 267 | 282 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 267 | 282 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 267 | 282 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 267 | 282 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
Q9H9S4 | 230 | 277 | 267 | 282 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ZHP |
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3'-UTR located exon skipping events that lost miRNA binding sites in CAB39L |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-4694-3p | chr13:49401249-49401256 | 8mer-1a | chr13:49401238-49401256 | 157.00 | -11.70 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-17-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-20a-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3670 | chr13:49401212-49401219 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3065-3p | chr13:49401190-49401197 | 8mer-1a | chr13:49401174-49401197 | 150.00 | -17.90 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-526b-3p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-519d-3p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3618 | chr13:49401174-49401181 | 8mer-1a | chr13:49401165-49401186 | 151.00 | -21.38 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-93-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-106b-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-20b-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
Mayo | ENST00000610540 | 49401133 | 49401270 | hsa-miR-106a-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-4694-3p | chr13:49401249-49401256 | 8mer-1a | chr13:49401238-49401256 | 157.00 | -11.70 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-17-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-20a-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3670 | chr13:49401212-49401219 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3065-3p | chr13:49401190-49401197 | 8mer-1a | chr13:49401174-49401197 | 150.00 | -17.90 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-526b-3p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-519d-3p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3618 | chr13:49401174-49401181 | 8mer-1a | chr13:49401165-49401186 | 151.00 | -21.38 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-93-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-106b-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-20b-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
MSBB | ENST00000610540 | 49401133 | 49401270 | hsa-miR-106a-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-4694-3p | chr13:49401249-49401256 | 8mer-1a | chr13:49401238-49401256 | 157.00 | -11.70 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-17-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-20a-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3670 | chr13:49401212-49401219 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3065-3p | chr13:49401190-49401197 | 8mer-1a | chr13:49401174-49401197 | 150.00 | -17.90 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-526b-3p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-519d-3p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-3618 | chr13:49401174-49401181 | 8mer-1a | chr13:49401165-49401186 | 151.00 | -21.38 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-93-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-106b-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-20b-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
ROSMAP | ENST00000610540 | 49401133 | 49401270 | hsa-miR-106a-5p | chr13:49401222-49401229 | 8mer-1a | chr13:49401207-49401229 | 168.00 | -19.12 |
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SNVs in the skipped exons for CAB39L |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for CAB39L |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for CAB39L |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for CAB39L |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for CAB39L |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CAB39L |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |