Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_130917 | chr10 | 46014444:46014552:46014854:46014942:46015126:46015266 | 46014854:46014942 |
exon_skip_131259 | chr10 | 46006412:46006597:46009124:46009212:46009411:46009547 | 46009124:46009212 |
exon_skip_156688 | chr10 | 46015207:46015266:46016540:46016694:46030526:46030592 | 46016540:46016694 |
exon_skip_15671 | chr10 | 46014444:46014552:46014854:46014942:46015126:46015136 | 46014854:46014942 |
exon_skip_177058 | chr10 | 46009411:46009551:46010223:46011206:46012883:46013023 | 46010223:46011206 |
exon_skip_181330 | chr10 | 46015170:46015266:46016540:46016694:46030526:46030592 | 46016540:46016694 |
exon_skip_207442 | chr10 | 46016540:46016694:46027432:46027528:46030526:46030607 | 46027432:46027528 |
exon_skip_256397 | chr10 | 46015126:46015266:46016540:46016694:46030526:46030592 | 46016540:46016694 |
exon_skip_288414 | chr10 | 46006412:46006597:46009124:46009212:46009411:46009524 | 46009124:46009212 |
exon_skip_44155 | chr10 | 46009411:46009551:46010223:46011206:46012883:46013026 | 46010223:46011206 |
exon_skip_53952 | chr10 | 46014444:46014552:46015126:46015266:46030526:46030592 | 46015126:46015266 |
exon_skip_95233 | chr10 | 46013550:46013639:46014444:46014552:46030526:46030592 | 46014444:46014552 |
exon_skip_95444 | chr10 | 46006427:46006597:46009411:46009551:46010223:46011206 | 46009411:46009551 |
exon_skip_9954 | chr10 | 46016540:46016694:46027432:46027528:46030526:46030592 | 46027432:46027528 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 239 | 565 | Alternative sequence | ID=VSP_003409;Note=In isoform Beta. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 327 | 333 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:1T5Z |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 350 | 350 | Natural variant | ID=VAR_009192;Note=C->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 474 | 474 | Natural variant | ID=VAR_014928;Note=P->R;Dbxref=dbSNP:rs1132111 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 561 | 561 | Natural variant | ID=VAR_009193;Note=L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:9892017;Dbxref=PMID:9892017 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 271 | 271 | Sequence conflict | Note=K->R;Ontology_term=ECO:0000305;evidence=ECO:0000305 |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 238 | 565 | 238 | 239 | Site | Note=Breakpoint for rearrangement to form RET/PTC3 oncogene |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |
Q13772 | 566 | 612 | 1 | 614 | Chain | ID=PRO_0000094410;Note=Nuclear receptor coactivator 4 |