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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for ZNF329 |
Gene summary |
Gene information | Gene symbol | ZNF329 | Gene ID | 79673 |
Gene name | zinc finger protein 329 | |
Synonyms | - | |
Cytomap | 19q13.43 | |
Type of gene | protein-coding | |
Description | zinc finger protein 329 | |
Modification date | 20200313 | |
UniProtAcc | ||
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for ZNF329 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for ZNF329 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_116069 | chr19 | 58142557:58142661:58143105:58143198:58150752:58150787 | 58143105:58143198 |
exon_skip_158918 | chr19 | 58142557:58142661:58143105:58143198:58154735:58155067 | 58143105:58143198 |
exon_skip_184592 | chr19 | 58129376:58129511:58132242:58132676:58142557:58142661 | 58132242:58132676 |
exon_skip_231253 | chr19 | 58142557:58142661:58143105:58143198:58154735:58155110 | 58143105:58143198 |
exon_skip_92376 | chr19 | 58126252:58129511:58132242:58132676:58142557:58142661 | 58132242:58132676 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for ZNF329 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000597186 | 58132242 | 58132676 | 3UTR-3UTR |
ENST00000597186 | 58143105 | 58143198 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000597186 | 58143105 | 58143198 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000597186 | 58132242 | 58132676 | 3UTR-3UTR |
ENST00000597186 | 58143105 | 58143198 | 3UTR-3UTR |
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Infer the effects of exon skipping event on protein functional features for ZNF329 |
p-ENSG00000181894_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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3'-UTR located exon skipping events that lost miRNA binding sites in ZNF329 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-7151-3p | chr19:58132428-58132435 | 8mer-1a | chr19:58132421-58132442 | 192.00 | -42.14 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-1304-3p | chr19:58132620-58132627 | 8mer-1a | chr19:58132606-58132627 | 167.00 | -32.54 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-4307 | chr19:58132258-58132265 | 8mer-1a | chr19:58132252-58132275 | 151.00 | -19.44 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-626 | chr19:58143186-58143193 | 8mer-1a | chr19:58143177-58143198 | 147.00 | -14.64 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-193b-5p | chr19:58132376-58132383 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-3670 | chr19:58132337-58132344 | 8mer-1a | chr19:58132327-58132348 | 153.00 | -23.62 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6862-3p | chr19:58143181-58143188 | 8mer-1a | chr19:58143164-58143188 | 151.00 | -23.70 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6784-3p | chr19:58143181-58143188 | 8mer-1a | chr19:58143164-58143188 | 151.00 | -23.70 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-6800-5p | chr19:58132468-58132475 | 8mer-1a | chr19:58132463-58132484 | 155.00 | -22.61 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-125a-3p | chr19:58132332-58132339 | 8mer-1a | chr19:58132327-58132348 | 153.00 | -23.62 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-12115 | chr19:58132385-58132392 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-1271-3p | chr19:58132411-58132418 | 8mer-1a | chr19:58132405-58132427 | 152.00 | -24.83 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-550a-3-5p | chr19:58132411-58132418 | 8mer-1a | chr19:58132405-58132427 | 152.00 | -24.83 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-550a-5p | chr19:58132411-58132418 | 8mer-1a | chr19:58132405-58132427 | 152.00 | -24.83 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6876-3p | chr19:58143186-58143193 | 8mer-1a | chr19:58143177-58143198 | 147.00 | -14.64 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-939-3p | chr19:58143127-58143134 | 8mer-1a | chr19:58143114-58143135 | 153.00 | -28.61 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-6851-5p | chr19:58132382-58132389 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-3689d | chr19:58132382-58132389 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-500b-3p | chr19:58143179-58143186 | 8mer-1a | chr19:58143168-58143186 | 155.00 | -23.07 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-361-3p | chr19:58132653-58132660 | 8mer-1a | chr19:58132638-58132660 | 161.00 | -24.26 |
Mayo | ENST00000597186 | 58132242 | 58132676 | hsa-miR-504-3p | chr19:58132643-58132650 | 8mer-1a | chr19:58132636-58132654 | 159.00 | -26.71 |
Mayo | ENST00000597186 | 58143105 | 58143198 | hsa-miR-504-3p | chr19:58143169-58143176 | 8mer-1a | chr19:58143155-58143176 | 170.00 | -30.63 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-626 | chr19:58143186-58143193 | 8mer-1a | chr19:58143177-58143198 | 147.00 | -14.64 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6862-3p | chr19:58143181-58143188 | 8mer-1a | chr19:58143164-58143188 | 151.00 | -23.70 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6784-3p | chr19:58143181-58143188 | 8mer-1a | chr19:58143164-58143188 | 151.00 | -23.70 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6876-3p | chr19:58143186-58143193 | 8mer-1a | chr19:58143177-58143198 | 147.00 | -14.64 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-939-3p | chr19:58143127-58143134 | 8mer-1a | chr19:58143114-58143135 | 153.00 | -28.61 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-500b-3p | chr19:58143179-58143186 | 8mer-1a | chr19:58143168-58143186 | 155.00 | -23.07 |
MSBB | ENST00000597186 | 58143105 | 58143198 | hsa-miR-504-3p | chr19:58143169-58143176 | 8mer-1a | chr19:58143155-58143176 | 170.00 | -30.63 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-7151-3p | chr19:58132428-58132435 | 8mer-1a | chr19:58132421-58132442 | 192.00 | -42.14 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-1304-3p | chr19:58132620-58132627 | 8mer-1a | chr19:58132606-58132627 | 167.00 | -32.54 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-4307 | chr19:58132258-58132265 | 8mer-1a | chr19:58132252-58132275 | 151.00 | -19.44 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-626 | chr19:58143186-58143193 | 8mer-1a | chr19:58143177-58143198 | 147.00 | -14.64 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-193b-5p | chr19:58132376-58132383 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-3670 | chr19:58132337-58132344 | 8mer-1a | chr19:58132327-58132348 | 153.00 | -23.62 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6862-3p | chr19:58143181-58143188 | 8mer-1a | chr19:58143164-58143188 | 151.00 | -23.70 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6784-3p | chr19:58143181-58143188 | 8mer-1a | chr19:58143164-58143188 | 151.00 | -23.70 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-6800-5p | chr19:58132468-58132475 | 8mer-1a | chr19:58132463-58132484 | 155.00 | -22.61 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-125a-3p | chr19:58132332-58132339 | 8mer-1a | chr19:58132327-58132348 | 153.00 | -23.62 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-12115 | chr19:58132385-58132392 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-1271-3p | chr19:58132411-58132418 | 8mer-1a | chr19:58132405-58132427 | 152.00 | -24.83 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-550a-3-5p | chr19:58132411-58132418 | 8mer-1a | chr19:58132405-58132427 | 152.00 | -24.83 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-550a-5p | chr19:58132411-58132418 | 8mer-1a | chr19:58132405-58132427 | 152.00 | -24.83 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-6876-3p | chr19:58143186-58143193 | 8mer-1a | chr19:58143177-58143198 | 147.00 | -14.64 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-939-3p | chr19:58143127-58143134 | 8mer-1a | chr19:58143114-58143135 | 153.00 | -28.61 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-6851-5p | chr19:58132382-58132389 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-3689d | chr19:58132382-58132389 | 8mer-1a | chr19:58132369-58132392 | 157.00 | -24.69 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-500b-3p | chr19:58143179-58143186 | 8mer-1a | chr19:58143168-58143186 | 155.00 | -23.07 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-361-3p | chr19:58132653-58132660 | 8mer-1a | chr19:58132638-58132660 | 161.00 | -24.26 |
ROSMAP | ENST00000597186 | 58132242 | 58132676 | hsa-miR-504-3p | chr19:58132643-58132650 | 8mer-1a | chr19:58132636-58132654 | 159.00 | -26.71 |
ROSMAP | ENST00000597186 | 58143105 | 58143198 | hsa-miR-504-3p | chr19:58143169-58143176 | 8mer-1a | chr19:58143155-58143176 | 170.00 | -30.63 |
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SNVs in the skipped exons for ZNF329 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for ZNF329 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ZNF329 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for ZNF329 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for ZNF329 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF329 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |