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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for SLC30A3 |
Gene summary |
Gene information | Gene symbol | SLC30A3 | Gene ID | 7781 |
Gene name | solute carrier family 30 member 3 | |
Synonyms | ZNT3 | |
Cytomap | 2p23.3 | |
Type of gene | protein-coding | |
Description | zinc transporter 3solute carrier family 30 (zinc transporter), member 3zinc transporter ZnT-3znT-3 | |
Modification date | 20200313 | |
UniProtAcc | ||
Context | - 27678294(Protective roles of SLC30A3 against endoplasmic reticulum stress via ERK1/2 activation) |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
SLC30A3 | GO:0061088 | regulation of sequestering of zinc ion | 17349999 |
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Gene structures and expression levels for SLC30A3 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for SLC30A3 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_157561 | chr2 | 27257154:27257352:27257905:27258058:27258161:27258250 | 27257905:27258058 |
exon_skip_165858 | chr2 | 27255386:27255460:27256386:27256520:27256788:27256893 | 27256386:27256520 |
exon_skip_242713 | chr2 | 27257202:27257352:27257905:27258058:27258161:27258307 | 27257905:27258058 |
exon_skip_291034 | chr2 | 27257154:27257352:27257905:27258058:27258161:27258307 | 27257905:27258058 |
exon_skip_40888 | chr2 | 27258753:27258934:27263346:27263459:27264010:27264082 | 27263346:27263459 |
exon_skip_89861 | chr2 | 27258161:27258307:27258753:27258934:27262812:27262871 | 27258753:27258934 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for SLC30A3 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000233535 | 27257905 | 27258058 | Frame-shift |
ENST00000233535 | 27258753 | 27258934 | Frame-shift |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000233535 | 27257905 | 27258058 | Frame-shift |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000233535 | 27257905 | 27258058 | Frame-shift |
ENST00000233535 | 27258753 | 27258934 | Frame-shift |
ENST00000233535 | 27256386 | 27256520 | In-frame |
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Infer the effects of exon skipping event on protein functional features for SLC30A3 |
p-ENSG00000115194_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000233535 | 2277 | 388 | 27256386 | 27256520 | 1237 | 1370 | 294 | 339 |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q99726 | 294 | 339 | 1 | 388 | Chain | ID=PRO_0000206096;Note=Zinc transporter 3 |
Q99726 | 294 | 339 | 298 | 298 | Natural variant | ID=VAR_077209;Note=Rare polymorphism%3B may be associated with increased risk for febrile seizures%3B the mutant has decreased localization to synaptic vesicles. R->C;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:26647834;Dbxref=dbSNP:rs146572471, |
Q99726 | 294 | 339 | 286 | 388 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
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3'-UTR located exon skipping events that lost miRNA binding sites in SLC30A3 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
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SNVs in the skipped exons for SLC30A3 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for SLC30A3 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for SLC30A3 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for SLC30A3 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for SLC30A3 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC30A3 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |