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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in RPSMAP, MSBB, and Mayo

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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3'-UTR located exon skipping events lost miRNA binding sites

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SNVs in the skipped exons with depth of coverage

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AD stage-associated exon skipping events

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Correlation with RNA binding proteins (RBPs)

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Related drugs with this gene

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Related diseases with this gene

Gene summary for STAT6

check button Gene summary
Gene informationGene symbol

STAT6

Gene ID

6778

Gene namesignal transducer and activator of transcription 6
SynonymsD12S1644|IL-4-STAT|STAT6B|STAT6C
Cytomap

12q13.3

Type of geneprotein-coding
Descriptionsignal transducer and activator of transcription 6STAT, interleukin4-inducedsignal transducer and activator of transcription 6, interleukin-4 inducedtranscription factor IL-4 STAT
Modification date20200329
UniProtAcc

A0A1W2PNW1,

A0A494C0T4,

A0A510GIJ1,

G3V2H4,

G3V2L2,

G3V2M3,

G3V370,

G3V568,

G3V5I8,

G3V5K5,

H0YIY2,

H0YJH6,

P42226,

Q5FBW6,

Q6LCD8,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
STAT6

GO:0045944

positive regulation of transcription by RNA polymerase II

8810328


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Gene structures and expression levels for STAT6

check buttonSkipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

ENSG00000166888
check button Differentially expressed gene analysis across multiple brain tissues between AD and control.
Tissue typeDEG directionBase mean exp.log2FC(AD/control)P-valueAdj. p-value

check button Differentially expressed isoform analysis across multiple brain tissues between AD and control.
Tissue typeDEG directionENSTTranscript info.Base mean exp.log2FC(AD/control)P-valueAdjc. p-value

check button Landscape of isoform expressions across multiple brain tissues between AD and control.
gencode gene structure

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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for STAT6

check button Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap).
boxplot

check button All exon skipping events in AD cohorts.
Exon skip IDchrExons involved in exon skippingSkipped exon
exon_skip_112497chr1257099996:57100090:57100846:57100899:57102290:5710244757100846:57100899
exon_skip_118253chr1257107256:57107314:57108163:57108299:57111129:5711119257108163:57108299
exon_skip_15305chr1257107231:57107314:57107605:57107743:57111129:5711134657107605:57107743
exon_skip_16362chr1257107231:57107314:57107659:57107743:57108163:5710828357107659:57107743
exon_skip_189061chr1257108163:57108299:57110043:57110110:57111129:5711119257110043:57110110
exon_skip_234980chr1257099996:57100090:57100846:57100899:57102290:5710249657100846:57100899
exon_skip_235498chr1257107256:57107314:57107605:57107743:57111129:5711119257107605:57107743
exon_skip_23605chr1257108163:57108299:57109941:57110110:57111129:5711119257109941:57110110
exon_skip_255234chr1257107256:57107314:57107605:57107743:57108163:5710828357107605:57107743
exon_skip_260794chr1257108163:57108299:57110077:57110110:57111129:5711119257110077:57110110
exon_skip_26082chr1257107605:57107743:57108163:57108299:57111129:5711135957108163:57108299
exon_skip_50772chr1257107231:57107314:57108163:57108299:57111129:5711134657108163:57108299
exon_skip_53197chr1257099015:57099078:57099294:57099440:57099767:5709979457099294:57099440
exon_skip_55261chr1257107666:57107743:57108163:57108299:57111129:5711119257108163:57108299
exon_skip_79967chr1257107256:57107314:57107605:57107743:57111129:5711135957107605:57107743
exon_skip_85330chr1257102829:57102921:57104464:57104586:57104726:5710481357104464:57104586
exon_skip_85998chr1257096850:57096978:57097068:57097133:57098505:5709855057097068:57097133
exon_skip_89858chr1257099419:57099440:57099767:57099903:57099996:5710009057099767:57099903

check button Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control.
Exon skipping informationTissue typeAvg(PSIs) in ADAvg(PSIs) in controlDifference (PSI)Adj. p-value


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Open reading frame (ORF) annotation in the exon skipping event for STAT6

check button Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003001345709976757099903Frame-shift
ENST000004540755709976757099903Frame-shift
ENST000005438735709976757099903Frame-shift
ENST000005561555709976757099903Frame-shift
ENST000003001345710760557107743Frame-shift
ENST000004540755710760557107743Frame-shift
ENST000005438735710760557107743Frame-shift
ENST000005561555710760557107743Frame-shift
ENST000003001345709706857097133In-frame
ENST000004540755709706857097133In-frame
ENST000005438735709706857097133In-frame
ENST000005561555709706857097133In-frame
ENST000003001345710446457104586In-frame
ENST000004540755710446457104586In-frame
ENST000005438735710446457104586In-frame
ENST000005561555710446457104586In-frame

check button Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003001345710760557107743Frame-shift
ENST000004540755710760557107743Frame-shift
ENST000005438735710760557107743Frame-shift
ENST000005561555710760557107743Frame-shift

check button Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003001345710760557107743Frame-shift
ENST000004540755710760557107743Frame-shift
ENST000005438735710760557107743Frame-shift
ENST000005561555710760557107743Frame-shift
ENST000003001345709929457099440In-frame
ENST000004540755709929457099440In-frame
ENST000005438735709929457099440In-frame
ENST000005561555709929457099440In-frame
ENST000003001345710446457104586In-frame
ENST000004540755710446457104586In-frame
ENST000005438735710446457104586In-frame
ENST000005561555710446457104586In-frame

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Infer the effects of exon skipping event on protein functional features for STAT6

p-ENSG00000166888_img4.png
boxplot

check button Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003001344051847571044645710458614161537363403
ENST000004540753054847571044645710458613761497363403
ENST000005438733136847571044645710458613411462363403
ENST000005561552941847571044645710458612391360363403
ENST000003001344051847570970685709713324862550720741
ENST000004540753054847570970685709713324462510720741
ENST000005438733136847570970685709713324112475720741
ENST000005561552941847570970685709713323092373720741

check button Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end

check button Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003001344051847571044645710458614161537363403
ENST000004540753054847571044645710458613761497363403
ENST000005438733136847571044645710458613411462363403
ENST000005561552941847571044645710458612391360363403
ENST000003001344051847570992945709944020712216581630
ENST000004540753054847570992945709944020312176581630
ENST000005438733136847570992945709944019962141581630
ENST000005561552941847570992945709944018942039581630

check button Lost protein functional features of individual exon skipping events in ROSMAP.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P422267207412847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422267207412847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422267207412847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422267207412847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P42226720741733733Sequence conflictNote=S->N;Ontology_term=ECO:0000305;evidence=ECO:0000305
P42226720741733733Sequence conflictNote=S->N;Ontology_term=ECO:0000305;evidence=ECO:0000305
P42226720741733733Sequence conflictNote=S->N;Ontology_term=ECO:0000305;evidence=ECO:0000305
P42226720741733733Sequence conflictNote=S->N;Ontology_term=ECO:0000305;evidence=ECO:0000305

check button Lost protein functional features of individual exon skipping events in MSBB.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature

check button Lost protein functional features of individual exon skipping events in Mayo.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403355365Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403384392Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226363403401406Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422263634032847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226363403379381HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226581630584589Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630584589Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630584589Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630584589Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P422265816302847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422265816302847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422265816302847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P422265816302847ChainID=PRO_0000182433;Note=Signal transducer and activator of transcription 6
P42226581630517632DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P42226581630517632DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P42226581630517632DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P42226581630517632DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P42226581630594599HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630594599HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630594599HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630594599HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630602607HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630602607HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630602607HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630602607HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630621624HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630621624HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630621624HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630621624HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630616618TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630616618TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630616618TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630616618TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5U
P42226581630625628TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226581630625628TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226581630625628TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W
P42226581630625628TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y5W


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3'-UTR located exon skipping events that lost miRNA binding sites in STAT6

check button 3'-UTR exon skipping evnets lost miRNA binding.
Tissue typeENSTExon skip startExon skip endmicroRNABinding site by TargetScanBinding type by TargetScanBdinding site by miRandaScore of miRandaEnergy by miRanda

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SNVs in the skipped exons for STAT6

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Depth of Coverage in the skipped exon of the mutated samples.

check button - Sashimi plot in the skipped exon of the mutated samples.

check button - Non-synonymous mutations located in the skipped exons.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

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AD stage-associated exon skippint events for STAT6

check button Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR).
AD stage infoCohortTissueSE idCoefficient P-valueChromosomeStrandE1 startE1 endSkipped startSkipped endE2 startE2 end

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for STAT6

check button sQTL information located at the skipped exons.
Tissue typeExon skip IDSNP idLocationP-valueFDR

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Correlation with RNA binding proteins (RBPs) for STAT6

check button Correlated RBP and related information.
Tissue typeRBP nameExon skip IDCorrelation coeifficientP-value

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RelatedDrugs for STAT6

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for STAT6

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource