|
Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for FIGNL1 |
Gene summary |
Gene information | Gene symbol | FIGNL1 | Gene ID | 63979 |
Gene name | fidgetin like 1 | |
Synonyms | - | |
Cytomap | 7p12.2 | |
Type of gene | protein-coding | |
Description | fidgetin-like protein 1 | |
Modification date | 20200313 | |
UniProtAcc | ||
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
FIGNL1 | GO:0010569 | regulation of double-strand break repair via homologous recombination | 23754376 |
FIGNL1 | GO:0071479 | cellular response to ionizing radiation | 23754376 |
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Gene structures and expression levels for FIGNL1 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
CB | UP | ENST00000433017.5 | FIGNL1-206:protein_coding:FIGNL1 | 5.172197e+01 | 1.170464e+00 | 2.411227e-06 | 3.166048e-05 |
CB | UP | ENST00000435566.5 | FIGNL1-207:protein_coding:FIGNL1 | 2.773174e+00 | 8.460157e-01 | 1.626975e-03 | 7.763532e-03 |
CB | UP | ENST00000448788.1 | FIGNL1-210:protein_coding:FIGNL1 | 1.735472e+00 | 1.039070e+00 | 8.472432e-03 | 3.034422e-02 |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for FIGNL1 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_102657 | chr7 | 50448181:50448289:50449545:50449723:50450301:50450324 | 50449545:50449723 |
exon_skip_112963 | chr7 | 50447183:50447297:50448181:50448289:50450301:50450324 | 50448181:50448289 |
exon_skip_135268 | chr7 | 50447183:50447297:50447968:50448055:50448181:50448289 | 50447968:50448055 |
exon_skip_140012 | chr7 | 50448181:50448289:50449545:50449723:50450301:50450368 | 50449545:50449723 |
exon_skip_149120 | chr7 | 50448181:50448289:50449118:50449723:50450301:50450368 | 50449118:50449723 |
exon_skip_192677 | chr7 | 50448181:50448289:50449500:50449723:50450301:50450324 | 50449500:50449723 |
exon_skip_226045 | chr7 | 50444129:50447297:50448181:50448289:50450301:50450390 | 50448181:50448289 |
exon_skip_253475 | chr7 | 50448181:50448289:50449563:50449723:50450301:50450368 | 50449563:50449723 |
exon_skip_26051 | chr7 | 50448181:50448289:50449118:50449723:50450301:50450324 | 50449118:50449723 |
exon_skip_284228 | chr7 | 50448181:50448289:50449563:50449723:50450301:50450324 | 50449563:50449723 |
exon_skip_51331 | chr7 | 50447183:50447297:50447968:50448055:50448181:50448284 | 50447968:50448055 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for FIGNL1 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000615084 | 50448181 | 50448289 | 3UTR-3UTR |
ENST00000433017 | 50449118 | 50449723 | 3UTR-3UTR |
ENST00000395556 | 50449563 | 50449723 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000615084 | 50448181 | 50448289 | 3UTR-3UTR |
ENST00000433017 | 50449118 | 50449723 | 3UTR-3UTR |
ENST00000395556 | 50449563 | 50449723 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000615084 | 50448181 | 50448289 | 3UTR-3UTR |
ENST00000433017 | 50449118 | 50449723 | 3UTR-3UTR |
ENST00000395556 | 50449563 | 50449723 | 3UTR-3UTR |
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Infer the effects of exon skipping event on protein functional features for FIGNL1 |
p-ENSG00000132436_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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3'-UTR located exon skipping events that lost miRNA binding sites in FIGNL1 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4251 | chr7:50449137-50449144 | 8mer-1a | chr7:50449133-50449159 | 154.00 | -29.35 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-488-3p | chr7:50449211-50449218 | 8mer-1a | chr7:50449194-50449218 | 157.00 | -19.81 |
Mayo | ENST00000395556 | 50449563 | 50449723 | hsa-miR-9851-5p | chr7:50449672-50449679 | 8mer-1a | chr7:50449657-50449679 | 163.00 | -19.32 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-9851-5p | chr7:50449672-50449679 | 8mer-1a | chr7:50449657-50449679 | 163.00 | -19.32 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-6124 | chr7:50449159-50449166 | 8mer-1a | chr7:50449146-50449166 | 171.00 | -29.67 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-8087 | chr7:50449197-50449204 | 8mer-1a | chr7:50449186-50449205 | 164.00 | -15.29 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-6749-3p | chr7:50449459-50449466 | 8mer-1a | chr7:50449447-50449466 | 149.00 | -22.24 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1252-5p | chr7:50449176-50449183 | 8mer-1a | chr7:50449161-50449183 | 153.00 | -10.63 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-619-3p | chr7:50448238-50448245 | 8mer-1a | chr7:50448227-50448250 | 156.00 | -21.77 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-16-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-16-1-3p | chr7:50449536-50449543 | 8mer-1a | chr7:50449532-50449556 | 147.00 | -17.23 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-15a-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-5007-3p | chr7:50449365-50449372 | 8mer-1a | chr7:50449351-50449372 | 145.00 | -11.08 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-487b-5p | chr7:50449245-50449252 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-487a-5p | chr7:50449245-50449252 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-203a-3p | chr7:50449376-50449383 | 8mer-1a | chr7:50449369-50449389 | 162.00 | -19.30 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-630 | chr7:50449502-50449509 | 8mer-1a | chr7:50449496-50449518 | 160.00 | -22.47 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-3177-5p | chr7:50448261-50448268 | 8mer-1a | chr7:50448241-50448268 | 147.00 | -20.63 |
Mayo | ENST00000395556 | 50449563 | 50449723 | hsa-miR-3680-3p | chr7:50449601-50449608 | 8mer-1a | chr7:50449588-50449610 | 152.00 | -11.01 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-3680-3p | chr7:50449601-50449608 | 8mer-1a | chr7:50449588-50449610 | 152.00 | -11.01 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-5093 | chr7:50449298-50449305 | 8mer-1a | chr7:50449288-50449309 | 153.00 | -14.90 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-195-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-497-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-4738-3p | chr7:50448229-50448236 | 8mer-1a | chr7:50448227-50448250 | 156.00 | -21.77 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-8078 | chr7:50449438-50449445 | 8mer-1a | chr7:50449437-50449455 | 160.00 | -27.33 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4776-3p | chr7:50449232-50449239 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-298 | chr7:50448253-50448260 | 8mer-1a | chr7:50448247-50448267 | 154.00 | -13.80 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1257 | chr7:50449480-50449487 | 8mer-1a | chr7:50449465-50449487 | 148.00 | -13.98 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1-5p | chr7:50449343-50449350 | 8mer-1a | chr7:50449330-50449350 | 158.00 | -7.53 |
Mayo | ENST00000395556 | 50449563 | 50449723 | hsa-miR-4764-3p | chr7:50449611-50449618 | 8mer-1a | chr7:50449608-50449629 | 159.00 | -23.12 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4764-3p | chr7:50449611-50449618 | 8mer-1a | chr7:50449608-50449629 | 159.00 | -23.12 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-4762-3p | chr7:50448210-50448217 | 8mer-1a | chr7:50448204-50448229 | 153.00 | -16.63 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-15b-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-589-3p | chr7:50449402-50449409 | 8mer-1a | chr7:50449394-50449416 | 157.00 | -9.33 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-6838-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-592 | chr7:50449274-50449281 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-597-5p | chr7:50449273-50449280 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-598-5p | chr7:50449262-50449269 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
Mayo | ENST00000395556 | 50449563 | 50449723 | hsa-miR-3074-5p | chr7:50449686-50449693 | 8mer-1a | chr7:50449685-50449711 | 152.00 | -20.12 |
Mayo | ENST00000433017 | 50449118 | 50449723 | hsa-miR-3074-5p | chr7:50449686-50449693 | 8mer-1a | chr7:50449685-50449711 | 152.00 | -20.12 |
Mayo | ENST00000615084 | 50448181 | 50448289 | hsa-miR-424-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4251 | chr7:50449137-50449144 | 8mer-1a | chr7:50449133-50449159 | 154.00 | -29.35 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-488-3p | chr7:50449211-50449218 | 8mer-1a | chr7:50449194-50449218 | 157.00 | -19.81 |
MSBB | ENST00000395556 | 50449563 | 50449723 | hsa-miR-9851-5p | chr7:50449672-50449679 | 8mer-1a | chr7:50449657-50449679 | 163.00 | -19.32 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-9851-5p | chr7:50449672-50449679 | 8mer-1a | chr7:50449657-50449679 | 163.00 | -19.32 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-6124 | chr7:50449159-50449166 | 8mer-1a | chr7:50449146-50449166 | 171.00 | -29.67 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-8087 | chr7:50449197-50449204 | 8mer-1a | chr7:50449186-50449205 | 164.00 | -15.29 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-6749-3p | chr7:50449459-50449466 | 8mer-1a | chr7:50449447-50449466 | 149.00 | -22.24 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1252-5p | chr7:50449176-50449183 | 8mer-1a | chr7:50449161-50449183 | 153.00 | -10.63 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-619-3p | chr7:50448238-50448245 | 8mer-1a | chr7:50448227-50448250 | 156.00 | -21.77 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-16-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-16-1-3p | chr7:50449536-50449543 | 8mer-1a | chr7:50449532-50449556 | 147.00 | -17.23 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-15a-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-5007-3p | chr7:50449365-50449372 | 8mer-1a | chr7:50449351-50449372 | 145.00 | -11.08 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-487b-5p | chr7:50449245-50449252 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-487a-5p | chr7:50449245-50449252 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-203a-3p | chr7:50449376-50449383 | 8mer-1a | chr7:50449369-50449389 | 162.00 | -19.30 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-630 | chr7:50449502-50449509 | 8mer-1a | chr7:50449496-50449518 | 160.00 | -22.47 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-3177-5p | chr7:50448261-50448268 | 8mer-1a | chr7:50448241-50448268 | 147.00 | -20.63 |
MSBB | ENST00000395556 | 50449563 | 50449723 | hsa-miR-3680-3p | chr7:50449601-50449608 | 8mer-1a | chr7:50449588-50449610 | 152.00 | -11.01 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-3680-3p | chr7:50449601-50449608 | 8mer-1a | chr7:50449588-50449610 | 152.00 | -11.01 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-5093 | chr7:50449298-50449305 | 8mer-1a | chr7:50449288-50449309 | 153.00 | -14.90 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-195-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-497-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-4738-3p | chr7:50448229-50448236 | 8mer-1a | chr7:50448227-50448250 | 156.00 | -21.77 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-8078 | chr7:50449438-50449445 | 8mer-1a | chr7:50449437-50449455 | 160.00 | -27.33 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4776-3p | chr7:50449232-50449239 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-298 | chr7:50448253-50448260 | 8mer-1a | chr7:50448247-50448267 | 154.00 | -13.80 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1257 | chr7:50449480-50449487 | 8mer-1a | chr7:50449465-50449487 | 148.00 | -13.98 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1-5p | chr7:50449343-50449350 | 8mer-1a | chr7:50449330-50449350 | 158.00 | -7.53 |
MSBB | ENST00000395556 | 50449563 | 50449723 | hsa-miR-4764-3p | chr7:50449611-50449618 | 8mer-1a | chr7:50449608-50449629 | 159.00 | -23.12 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4764-3p | chr7:50449611-50449618 | 8mer-1a | chr7:50449608-50449629 | 159.00 | -23.12 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-4762-3p | chr7:50448210-50448217 | 8mer-1a | chr7:50448204-50448229 | 153.00 | -16.63 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-15b-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-589-3p | chr7:50449402-50449409 | 8mer-1a | chr7:50449394-50449416 | 157.00 | -9.33 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-6838-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-592 | chr7:50449274-50449281 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-597-5p | chr7:50449273-50449280 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-598-5p | chr7:50449262-50449269 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
MSBB | ENST00000395556 | 50449563 | 50449723 | hsa-miR-3074-5p | chr7:50449686-50449693 | 8mer-1a | chr7:50449685-50449711 | 152.00 | -20.12 |
MSBB | ENST00000433017 | 50449118 | 50449723 | hsa-miR-3074-5p | chr7:50449686-50449693 | 8mer-1a | chr7:50449685-50449711 | 152.00 | -20.12 |
MSBB | ENST00000615084 | 50448181 | 50448289 | hsa-miR-424-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4251 | chr7:50449137-50449144 | 8mer-1a | chr7:50449133-50449159 | 154.00 | -29.35 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-488-3p | chr7:50449211-50449218 | 8mer-1a | chr7:50449194-50449218 | 157.00 | -19.81 |
ROSMAP | ENST00000395556 | 50449563 | 50449723 | hsa-miR-9851-5p | chr7:50449672-50449679 | 8mer-1a | chr7:50449657-50449679 | 163.00 | -19.32 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-9851-5p | chr7:50449672-50449679 | 8mer-1a | chr7:50449657-50449679 | 163.00 | -19.32 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-6124 | chr7:50449159-50449166 | 8mer-1a | chr7:50449146-50449166 | 171.00 | -29.67 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-8087 | chr7:50449197-50449204 | 8mer-1a | chr7:50449186-50449205 | 164.00 | -15.29 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-6749-3p | chr7:50449459-50449466 | 8mer-1a | chr7:50449447-50449466 | 149.00 | -22.24 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1252-5p | chr7:50449176-50449183 | 8mer-1a | chr7:50449161-50449183 | 153.00 | -10.63 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-619-3p | chr7:50448238-50448245 | 8mer-1a | chr7:50448227-50448250 | 156.00 | -21.77 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-16-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-16-1-3p | chr7:50449536-50449543 | 8mer-1a | chr7:50449532-50449556 | 147.00 | -17.23 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-15a-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-5007-3p | chr7:50449365-50449372 | 8mer-1a | chr7:50449351-50449372 | 145.00 | -11.08 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-487b-5p | chr7:50449245-50449252 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-487a-5p | chr7:50449245-50449252 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-203a-3p | chr7:50449376-50449383 | 8mer-1a | chr7:50449369-50449389 | 162.00 | -19.30 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-630 | chr7:50449502-50449509 | 8mer-1a | chr7:50449496-50449518 | 160.00 | -22.47 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-3177-5p | chr7:50448261-50448268 | 8mer-1a | chr7:50448241-50448268 | 147.00 | -20.63 |
ROSMAP | ENST00000395556 | 50449563 | 50449723 | hsa-miR-3680-3p | chr7:50449601-50449608 | 8mer-1a | chr7:50449588-50449610 | 152.00 | -11.01 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-3680-3p | chr7:50449601-50449608 | 8mer-1a | chr7:50449588-50449610 | 152.00 | -11.01 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-5093 | chr7:50449298-50449305 | 8mer-1a | chr7:50449288-50449309 | 153.00 | -14.90 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-195-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-497-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-4738-3p | chr7:50448229-50448236 | 8mer-1a | chr7:50448227-50448250 | 156.00 | -21.77 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-8078 | chr7:50449438-50449445 | 8mer-1a | chr7:50449437-50449455 | 160.00 | -27.33 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4776-3p | chr7:50449232-50449239 | 8mer-1a | chr7:50449229-50449252 | 159.00 | -17.25 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-298 | chr7:50448253-50448260 | 8mer-1a | chr7:50448247-50448267 | 154.00 | -13.80 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1257 | chr7:50449480-50449487 | 8mer-1a | chr7:50449465-50449487 | 148.00 | -13.98 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-1-5p | chr7:50449343-50449350 | 8mer-1a | chr7:50449330-50449350 | 158.00 | -7.53 |
ROSMAP | ENST00000395556 | 50449563 | 50449723 | hsa-miR-4764-3p | chr7:50449611-50449618 | 8mer-1a | chr7:50449608-50449629 | 159.00 | -23.12 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-4764-3p | chr7:50449611-50449618 | 8mer-1a | chr7:50449608-50449629 | 159.00 | -23.12 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-4762-3p | chr7:50448210-50448217 | 8mer-1a | chr7:50448204-50448229 | 153.00 | -16.63 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-15b-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-589-3p | chr7:50449402-50449409 | 8mer-1a | chr7:50449394-50449416 | 157.00 | -9.33 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-6838-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-592 | chr7:50449274-50449281 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-597-5p | chr7:50449273-50449280 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-598-5p | chr7:50449262-50449269 | 8mer-1a | chr7:50449260-50449281 | 161.00 | -21.47 |
ROSMAP | ENST00000395556 | 50449563 | 50449723 | hsa-miR-3074-5p | chr7:50449686-50449693 | 8mer-1a | chr7:50449685-50449711 | 152.00 | -20.12 |
ROSMAP | ENST00000433017 | 50449118 | 50449723 | hsa-miR-3074-5p | chr7:50449686-50449693 | 8mer-1a | chr7:50449685-50449711 | 152.00 | -20.12 |
ROSMAP | ENST00000615084 | 50448181 | 50448289 | hsa-miR-424-5p | chr7:50448280-50448287 | 8mer-1a | chr7:50448265-50448287 | 157.00 | -18.81 |
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SNVs in the skipped exons for FIGNL1 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for FIGNL1 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for FIGNL1 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
CB | exon_skip_51331 | rs12719019 | chr7:50408441 | 1.334553e-11 | 1.614656e-08 |
CB | exon_skip_51331 | rs10899736 | chr7:50479227 | 9.936968e-10 | 8.210553e-07 |
CB | exon_skip_51331 | rs10499694 | chr7:50546475 | 1.594586e-06 | 5.322114e-04 |
CB | exon_skip_51331 | rs4580999 | chr7:50478563 | 6.830003e-06 | 1.888805e-03 |
CB | exon_skip_51331 | rs11238134 | chr7:50475229 | 6.644908e-05 | 1.246446e-02 |
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Correlation with RNA binding proteins (RBPs) for FIGNL1 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for FIGNL1 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FIGNL1 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |