|
Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for ZNF667 |
Gene summary |
Gene information | Gene symbol | ZNF667 | Gene ID | 63934 |
Gene name | zinc finger protein 667 | |
Synonyms | MIPU1 | |
Cytomap | 19q13.43 | |
Type of gene | protein-coding | |
Description | zinc finger protein 667myocardial ischemic preconditioning upregulated 1 ortholog | |
Modification date | 20200313 | |
UniProtAcc | ||
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for ZNF667 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for ZNF667 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_13049 | chr19 | 56442520:56442741:56449557:56449657:56458155:56458247 | 56449557:56449657 |
exon_skip_226937 | chr19 | 56442520:56442741:56444131:56444281:56458155:56458247 | 56444131:56444281 |
exon_skip_244108 | chr19 | 56471699:56472187:56474012:56474124:56477272:56477345 | 56474012:56474124 |
exon_skip_27263 | chr19 | 56462338:56462429:56471699:56472187:56474012:56474124 | 56471699:56472187 |
exon_skip_46965 | chr19 | 56439330:56442741:56449557:56449657:56458155:56458247 | 56449557:56449657 |
exon_skip_80950 | chr19 | 56458155:56458247:56460689:56460815:56462338:56462429 | 56460689:56460815 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for ZNF667 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000504904 | 56471699 | 56472187 | 3UTR-3UTR |
ENST00000504904 | 56474012 | 56474124 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000504904 | 56471699 | 56472187 | 3UTR-3UTR |
ENST00000504904 | 56474012 | 56474124 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000504904 | 56471699 | 56472187 | 3UTR-3UTR |
ENST00000504904 | 56474012 | 56474124 | 3UTR-3UTR |
ENST00000292069 | 56460689 | 56460815 | Frame-shift |
ENST00000504904 | 56460689 | 56460815 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for ZNF667 |
p-ENSG00000198046_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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3'-UTR located exon skipping events that lost miRNA binding sites in ZNF667 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6726-5p | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-942-3p | chr19:56472037-56472044 | 8mer-1a | chr19:56472024-56472044 | 162.00 | -21.55 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6737-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1295b-5p | chr19:56472106-56472113 | 8mer-1a | chr19:56472098-56472120 | 163.00 | -21.52 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4481 | chr19:56471864-56471871 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4300 | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-920 | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-625-5p | chr19:56471956-56471963 | 8mer-1a | chr19:56471956-56471981 | 167.00 | -25.86 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4505 | chr19:56472084-56472091 | 8mer-1a | chr19:56472072-56472091 | 147.00 | -21.43 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-342-5p | chr19:56471813-56471820 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
Mayo | ENST00000504904 | 56474012 | 56474124 | hsa-miR-211-3p | chr19:56474051-56474058 | 8mer-1a | chr19:56474035-56474059 | 160.00 | -28.18 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5572 | chr19:56471815-56471822 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1288-5p | chr19:56471996-56472003 | 8mer-1a | chr19:56471979-56472003 | 152.00 | -24.48 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4745-5p | chr19:56471864-56471871 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1238-5p | chr19:56471865-56471872 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-520e-5p | chr19:56471878-56471885 | 8mer-1a | chr19:56471874-56471896 | 163.00 | -18.96 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-371a-3p | chr19:56472180-56472187 | 8mer-1a | chr19:56472165-56472187 | 160.00 | -18.27 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-372-5p | chr19:56471822-56471829 | 8mer-1a | chr19:56471807-56471829 | 154.00 | -11.74 |
Mayo | ENST00000504904 | 56474012 | 56474124 | hsa-miR-6512-3p | chr19:56474116-56474123 | 8mer-1a | chr19:56474102-56474123 | 156.00 | -24.09 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6871-5p | chr19:56471892-56471899 | 8mer-1a | chr19:56471878-56471899 | 146.00 | -16.50 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6812-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4758-5p | chr19:56471865-56471872 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6819-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6890-3p | chr19:56471976-56471983 | 8mer-1a | chr19:56471975-56471994 | 157.00 | -17.72 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5787 | chr19:56472084-56472091 | 8mer-1a | chr19:56472072-56472091 | 147.00 | -21.43 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6825-5p | chr19:56472080-56472087 | 8mer-1a | chr19:56472068-56472088 | 154.00 | -31.07 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5591-5p | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
Mayo | ENST00000504904 | 56474012 | 56474124 | hsa-miR-6720-5p | chr19:56474116-56474123 | 8mer-1a | chr19:56474102-56474123 | 156.00 | -24.09 |
Mayo | ENST00000504904 | 56474012 | 56474124 | hsa-miR-550b-2-5p | chr19:56474083-56474090 | 8mer-1a | chr19:56474081-56474104 | 145.00 | -24.60 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4664-5p | chr19:56471813-56471820 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-532-3p | chr19:56471927-56471934 | 8mer-1a | chr19:56471914-56471935 | 148.00 | -25.91 |
Mayo | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1912-3p | chr19:56472106-56472113 | 8mer-1a | chr19:56472098-56472120 | 163.00 | -21.52 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6726-5p | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-942-3p | chr19:56472037-56472044 | 8mer-1a | chr19:56472024-56472044 | 162.00 | -21.55 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6737-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1295b-5p | chr19:56472106-56472113 | 8mer-1a | chr19:56472098-56472120 | 163.00 | -21.52 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4481 | chr19:56471864-56471871 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4300 | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-920 | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-625-5p | chr19:56471956-56471963 | 8mer-1a | chr19:56471956-56471981 | 167.00 | -25.86 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4505 | chr19:56472084-56472091 | 8mer-1a | chr19:56472072-56472091 | 147.00 | -21.43 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-342-5p | chr19:56471813-56471820 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
MSBB | ENST00000504904 | 56474012 | 56474124 | hsa-miR-211-3p | chr19:56474051-56474058 | 8mer-1a | chr19:56474035-56474059 | 160.00 | -28.18 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5572 | chr19:56471815-56471822 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1288-5p | chr19:56471996-56472003 | 8mer-1a | chr19:56471979-56472003 | 152.00 | -24.48 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4745-5p | chr19:56471864-56471871 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1238-5p | chr19:56471865-56471872 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-520e-5p | chr19:56471878-56471885 | 8mer-1a | chr19:56471874-56471896 | 163.00 | -18.96 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-371a-3p | chr19:56472180-56472187 | 8mer-1a | chr19:56472165-56472187 | 160.00 | -18.27 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-372-5p | chr19:56471822-56471829 | 8mer-1a | chr19:56471807-56471829 | 154.00 | -11.74 |
MSBB | ENST00000504904 | 56474012 | 56474124 | hsa-miR-6512-3p | chr19:56474116-56474123 | 8mer-1a | chr19:56474102-56474123 | 156.00 | -24.09 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6871-5p | chr19:56471892-56471899 | 8mer-1a | chr19:56471878-56471899 | 146.00 | -16.50 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6812-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4758-5p | chr19:56471865-56471872 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6819-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6890-3p | chr19:56471976-56471983 | 8mer-1a | chr19:56471975-56471994 | 157.00 | -17.72 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5787 | chr19:56472084-56472091 | 8mer-1a | chr19:56472072-56472091 | 147.00 | -21.43 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6825-5p | chr19:56472080-56472087 | 8mer-1a | chr19:56472068-56472088 | 154.00 | -31.07 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5591-5p | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
MSBB | ENST00000504904 | 56474012 | 56474124 | hsa-miR-6720-5p | chr19:56474116-56474123 | 8mer-1a | chr19:56474102-56474123 | 156.00 | -24.09 |
MSBB | ENST00000504904 | 56474012 | 56474124 | hsa-miR-550b-2-5p | chr19:56474083-56474090 | 8mer-1a | chr19:56474081-56474104 | 145.00 | -24.60 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4664-5p | chr19:56471813-56471820 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-532-3p | chr19:56471927-56471934 | 8mer-1a | chr19:56471914-56471935 | 148.00 | -25.91 |
MSBB | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1912-3p | chr19:56472106-56472113 | 8mer-1a | chr19:56472098-56472120 | 163.00 | -21.52 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6726-5p | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-942-3p | chr19:56472037-56472044 | 8mer-1a | chr19:56472024-56472044 | 162.00 | -21.55 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6737-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1295b-5p | chr19:56472106-56472113 | 8mer-1a | chr19:56472098-56472120 | 163.00 | -21.52 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4481 | chr19:56471864-56471871 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4300 | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-920 | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-625-5p | chr19:56471956-56471963 | 8mer-1a | chr19:56471956-56471981 | 167.00 | -25.86 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4505 | chr19:56472084-56472091 | 8mer-1a | chr19:56472072-56472091 | 147.00 | -21.43 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-342-5p | chr19:56471813-56471820 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
ROSMAP | ENST00000504904 | 56474012 | 56474124 | hsa-miR-211-3p | chr19:56474051-56474058 | 8mer-1a | chr19:56474035-56474059 | 160.00 | -28.18 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5572 | chr19:56471815-56471822 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1288-5p | chr19:56471996-56472003 | 8mer-1a | chr19:56471979-56472003 | 152.00 | -24.48 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4745-5p | chr19:56471864-56471871 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1238-5p | chr19:56471865-56471872 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-520e-5p | chr19:56471878-56471885 | 8mer-1a | chr19:56471874-56471896 | 163.00 | -18.96 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-371a-3p | chr19:56472180-56472187 | 8mer-1a | chr19:56472165-56472187 | 160.00 | -18.27 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-372-5p | chr19:56471822-56471829 | 8mer-1a | chr19:56471807-56471829 | 154.00 | -11.74 |
ROSMAP | ENST00000504904 | 56474012 | 56474124 | hsa-miR-6512-3p | chr19:56474116-56474123 | 8mer-1a | chr19:56474102-56474123 | 156.00 | -24.09 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6871-5p | chr19:56471892-56471899 | 8mer-1a | chr19:56471878-56471899 | 146.00 | -16.50 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6812-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4758-5p | chr19:56471865-56471872 | 8mer-1a | chr19:56471849-56471872 | 160.00 | -28.13 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6819-5p | chr19:56471814-56471821 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6890-3p | chr19:56471976-56471983 | 8mer-1a | chr19:56471975-56471994 | 157.00 | -17.72 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5787 | chr19:56472084-56472091 | 8mer-1a | chr19:56472072-56472091 | 147.00 | -21.43 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-6825-5p | chr19:56472080-56472087 | 8mer-1a | chr19:56472068-56472088 | 154.00 | -31.07 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-5591-5p | chr19:56471890-56471897 | 8mer-1a | chr19:56471878-56471897 | 148.00 | -20.68 |
ROSMAP | ENST00000504904 | 56474012 | 56474124 | hsa-miR-6720-5p | chr19:56474116-56474123 | 8mer-1a | chr19:56474102-56474123 | 156.00 | -24.09 |
ROSMAP | ENST00000504904 | 56474012 | 56474124 | hsa-miR-550b-2-5p | chr19:56474083-56474090 | 8mer-1a | chr19:56474081-56474104 | 145.00 | -24.60 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-4664-5p | chr19:56471813-56471820 | 8mer-1a | chr19:56471804-56471822 | 159.00 | -25.02 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-532-3p | chr19:56471927-56471934 | 8mer-1a | chr19:56471914-56471935 | 148.00 | -25.91 |
ROSMAP | ENST00000504904 | 56471699 | 56472187 | hsa-miR-1912-3p | chr19:56472106-56472113 | 8mer-1a | chr19:56472098-56472120 | 163.00 | -21.52 |
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SNVs in the skipped exons for ZNF667 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for ZNF667 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ZNF667 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for ZNF667 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for ZNF667 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF667 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |