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| Open reading frame (ORF) annotation in the exon skipping event |
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| 3'-UTR located exon skipping events lost miRNA binding sites |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
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Gene summary for SLC22A23 |
 Gene summary |
| Gene information | Gene symbol | SLC22A23 | Gene ID | 63027 |
| Gene name | solute carrier family 22 member 23 | |
| Synonyms | C6orf85 | |
| Cytomap | 6p25.2 | |
| Type of gene | protein-coding | |
| Description | solute carrier family 22 member 23ion transporter protein | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for SLC22A23 |
| Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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ENSG00000137266
| Differentially expressed gene analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
| Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
| Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for SLC22A23 |
| Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
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| All exon skipping events in AD cohorts. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
| exon_skip_141135 | chr6 | 3283874:3283975:3284936:3284959:3285079:3285111 | 3284936:3284959 |
| exon_skip_177717 | chr6 | 3273356:3273412:3276681:3276976:3283852:3283975 | 3276681:3276976 |
| exon_skip_222671 | chr6 | 3323887:3324002:3410188:3410342:3415752:3415855 | 3410188:3410342 |
| exon_skip_230907 | chr6 | 3273356:3273412:3276681:3276976:3283852:3284120 | 3276681:3276976 |
| exon_skip_250842 | chr6 | 3298091:3298218:3323834:3324002:3410188:3410342 | 3323834:3324002 |
| exon_skip_273720 | chr6 | 3410188:3410342:3415752:3415855:3455906:3456043 | 3415752:3415855 |
| exon_skip_3348 | chr6 | 3298091:3298218:3323266:3323318:3323834:3324002 | 3323266:3323318 |
| exon_skip_40676 | chr6 | 3289766:3289866:3298091:3298218:3323834:3324002 | 3298091:3298218 |
| Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |