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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for RECQL |
Gene summary |
Gene information | Gene symbol | RECQL | Gene ID | 5965 |
Gene name | RecQ like helicase | |
Synonyms | RECQL1|RecQ1 | |
Cytomap | 12p12.1 | |
Type of gene | protein-coding | |
Description | ATP-dependent DNA helicase Q1DNA helicase, RecQ-like type 1DNA-dependent ATPase Q1RecQ helicase-likeRecQ protein-like (DNA helicase Q1-like)recQ protein-like 1 | |
Modification date | 20200313 | |
UniProtAcc | ||
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
RECQL | GO:0000733 | DNA strand renaturation | 19177149 |
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Gene structures and expression levels for RECQL |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
TC | UP | ENST00000396093.7 | RECQL-202:protein_coding:RECQL | 3.594525e+00 | 1.313187e+00 | 3.220840e-06 | 1.047637e-04 |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for RECQL |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_136213 | chr12 | 21499555:21499615:21501170:21501215:21501463:21501669 | 21501170:21501215 |
exon_skip_2124 | chr12 | 21499555:21499615:21501170:21501372:21501463:21501663 | 21501170:21501372 |
exon_skip_231008 | chr12 | 21499555:21499615:21501170:21501215:21501481:21501595 | 21501170:21501215 |
exon_skip_256548 | chr12 | 21499555:21499615:21501170:21501372:21501463:21501669 | 21501170:21501372 |
exon_skip_261246 | chr12 | 21483477:21483574:21486479:21486585:21490199:21490378 | 21486479:21486585 |
exon_skip_287047 | chr12 | 21499555:21499615:21501170:21501215:21501413:21501551 | 21501170:21501215 |
exon_skip_36932 | chr12 | 21499555:21499615:21501170:21501372:21501481:21501593 | 21501170:21501372 |
exon_skip_77568 | chr12 | 21499555:21499615:21501170:21501215:21501413:21501655 | 21501170:21501215 |
exon_skip_95 | chr12 | 21499555:21499615:21501170:21501215:21501463:21501663 | 21501170:21501215 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for RECQL |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000421138 | 21501170 | 21501215 | 3UTR-3UTR |
ENST00000421138 | 21486479 | 21486585 | Frame-shift |
ENST00000444129 | 21486479 | 21486585 | Frame-shift |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000421138 | 21501170 | 21501215 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000421138 | 21501170 | 21501215 | 3UTR-3UTR |
ENST00000421138 | 21486479 | 21486585 | Frame-shift |
ENST00000444129 | 21486479 | 21486585 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for RECQL |
p-ENSG00000004700_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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3'-UTR located exon skipping events that lost miRNA binding sites in RECQL |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000421138 | 21501170 | 21501215 | hsa-miR-4701-5p | chr12:21501203-21501210 | 8mer-1a | chr12:21501188-21501210 | 158.00 | -22.54 |
Mayo | ENST00000421138 | 21501170 | 21501215 | hsa-miR-588 | chr12:21501203-21501210 | 8mer-1a | chr12:21501188-21501210 | 158.00 | -22.54 |
MSBB | ENST00000421138 | 21501170 | 21501215 | hsa-miR-4701-5p | chr12:21501203-21501210 | 8mer-1a | chr12:21501188-21501210 | 158.00 | -22.54 |
MSBB | ENST00000421138 | 21501170 | 21501215 | hsa-miR-588 | chr12:21501203-21501210 | 8mer-1a | chr12:21501188-21501210 | 158.00 | -22.54 |
ROSMAP | ENST00000421138 | 21501170 | 21501215 | hsa-miR-4701-5p | chr12:21501203-21501210 | 8mer-1a | chr12:21501188-21501210 | 158.00 | -22.54 |
ROSMAP | ENST00000421138 | 21501170 | 21501215 | hsa-miR-588 | chr12:21501203-21501210 | 8mer-1a | chr12:21501188-21501210 | 158.00 | -22.54 |
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SNVs in the skipped exons for RECQL |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for RECQL |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for RECQL |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for RECQL |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for RECQL |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RECQL |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |