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| Open reading frame (ORF) annotation in the exon skipping event |
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| 3'-UTR located exon skipping events lost miRNA binding sites |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
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Gene summary for RAPSN |
 Gene summary |
| Gene information | Gene symbol | RAPSN | Gene ID | 5913 |
| Gene name | receptor associated protein of the synapse | |
| Synonyms | CMS11|CMS4C|FADS|FADS2|RAPSYN|RNF205 | |
| Cytomap | 11p11.2 | |
| Type of gene | protein-coding | |
| Description | 43 kDa receptor-associated protein of the synapse43 kda postsynaptic proteinRING finger protein 205acetylcholine receptor-associated 43 kda protein | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context | - 28915562(Detecting the Genetic Link Between Alzheimer's Disease and Obesity Using Bioinformatics Analysis of GWAS Data) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for RAPSN |
| Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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ENSG00000165917
| Differentially expressed gene analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
| Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
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| Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
| CB | DOWN | ENST00000524487.5 | RAPSN-203:protein_coding:RAPSN | 5.720278e-01 | -1.654191e+00 | 7.540991e-03 | 2.758750e-02 |
| Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for RAPSN |
| Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
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| All exon skipping events in AD cohorts. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
| exon_skip_10531 | chr11 | 47438732:47438931:47441159:47441212:47441611:47441731 | 47441159:47441212 |
| exon_skip_51194 | chr11 | 47441159:47441212:47441611:47441733:47441823:47441921 | 47441611:47441733 |
| Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
| Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for RAPSN |
| Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000298854 | 47441159 | 47441212 | In-frame |
| ENST00000298854 | 47441611 | 47441733 | In-frame |
| Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000298854 | 47441159 | 47441212 | In-frame |
| ENST00000298854 | 47441611 | 47441733 | In-frame |
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Infer the effects of exon skipping event on protein functional features for RAPSN |
p-ENSG00000165917_img4.png |
| Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000298854 | 1688 | 412 | 47441611 | 47441733 | 1004 | 1125 | 263 | 303 |
| ENST00000298854 | 1688 | 412 | 47441159 | 47441212 | 1127 | 1179 | 304 | 321 |
| Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000298854 | 1688 | 412 | 47441611 | 47441733 | 1004 | 1125 | 263 | 303 |
| ENST00000298854 | 1688 | 412 | 47441159 | 47441212 | 1127 | 1179 | 304 | 321 |
| Lost protein functional features of individual exon skipping events in ROSMAP. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q13702 | 263 | 303 | 264 | 322 | Alternative sequence | ID=VSP_005533;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q13702 | 263 | 303 | 2 | 412 | Chain | ID=PRO_0000167591;Note=43 kDa receptor-associated protein of the synapse |
| Q13702 | 263 | 303 | 283 | 283 | Natural variant | ID=VAR_043903;Note=In CMS11%3B reduced coclustering with acetylcholine receptor. L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16931511;Dbxref=dbSNP:rs104894293,PMID:16931511 |
| Q13702 | 263 | 303 | 246 | 279 | Repeat | Note=TPR 6 |
| Q13702 | 263 | 303 | 286 | 319 | Repeat | Note=TPR 7 |
| Q13702 | 304 | 321 | 264 | 322 | Alternative sequence | ID=VSP_005533;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q13702 | 304 | 321 | 2 | 412 | Chain | ID=PRO_0000167591;Note=43 kDa receptor-associated protein of the synapse |
| Q13702 | 304 | 321 | 286 | 319 | Repeat | Note=TPR 7 |
| Lost protein functional features of individual exon skipping events in MSBB. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in Mayo. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q13702 | 263 | 303 | 264 | 322 | Alternative sequence | ID=VSP_005533;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q13702 | 263 | 303 | 2 | 412 | Chain | ID=PRO_0000167591;Note=43 kDa receptor-associated protein of the synapse |
| Q13702 | 263 | 303 | 283 | 283 | Natural variant | ID=VAR_043903;Note=In CMS11%3B reduced coclustering with acetylcholine receptor. L->P;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16931511;Dbxref=dbSNP:rs104894293,PMID:16931511 |
| Q13702 | 263 | 303 | 246 | 279 | Repeat | Note=TPR 6 |
| Q13702 | 263 | 303 | 286 | 319 | Repeat | Note=TPR 7 |
| Q13702 | 304 | 321 | 264 | 322 | Alternative sequence | ID=VSP_005533;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q13702 | 304 | 321 | 2 | 412 | Chain | ID=PRO_0000167591;Note=43 kDa receptor-associated protein of the synapse |
| Q13702 | 304 | 321 | 286 | 319 | Repeat | Note=TPR 7 |
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3'-UTR located exon skipping events that lost miRNA binding sites in RAPSN |
| 3'-UTR exon skipping evnets lost miRNA binding. |
| Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
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SNVs in the skipped exons for RAPSN |
| - Differential PSIs between mutated versus non-mutated samples. |
| - Depth of Coverage in the skipped exon of the mutated samples. |
| - Sashimi plot in the skipped exon of the mutated samples. |
| - Non-synonymous mutations located in the skipped exons. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for RAPSN |
| Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
| AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for RAPSN |
| sQTL information located at the skipped exons. |
| Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for RAPSN |
| Correlated RBP and related information. |
| Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for RAPSN |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RAPSN |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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