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| Open reading frame (ORF) annotation in the exon skipping event |
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| 3'-UTR located exon skipping events lost miRNA binding sites |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
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Gene summary for MRPS22 |
 Gene summary |
| Gene information | Gene symbol | MRPS22 | Gene ID | 56945 |
| Gene name | mitochondrial ribosomal protein S22 | |
| Synonyms | C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22 | |
| Cytomap | 3q23 | |
| Type of gene | protein-coding | |
| Description | 28S ribosomal protein S22, mitochondrialS22mtmitochondrial small ribosomal subunit protein mS22 | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for MRPS22 |
| Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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ENSG00000175110
| Differentially expressed gene analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
| Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
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| Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
| PCC | DOWN | ENST00000478464.5 | MRPS22-205:protein_coding:MRPS22 | 1.255653e+01 | -8.193411e-01 | 8.886938e-06 | 1.168886e-03 |
| Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for MRPS22 |
| Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
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| All exon skipping events in AD cohorts. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
| exon_skip_122534 | chr3 | 139350179:139350322:139351031:139351060:139352647:139352792 | 139351031:139351060 |
| exon_skip_123655 | chr3 | 139344116:139344198:139346878:139347044:139348160:139348324 | 139346878:139347044 |
| exon_skip_189352 | chr3 | 139350179:139350322:139350977:139351060:139352647:139352792 | 139350977:139351060 |
| exon_skip_253258 | chr3 | 139344039:139344198:139346851:139347044:139348160:139348324 | 139346851:139347044 |
| exon_skip_268450 | chr3 | 139281714:139281835:139282531:139282896:139343956:139344023 | 139282531:139282896 |
| exon_skip_278325 | chr3 | 139351031:139351060:139352647:139352792:139355682:139355790 | 139352647:139352792 |
| exon_skip_40128 | chr3 | 139344116:139344198:139346881:139347044:139348160:139348324 | 139346881:139347044 |
| Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
| Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for MRPS22 |
| Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000310776 | 139350977 | 139351060 | In-frame |
| ENST00000495075 | 139350977 | 139351060 | In-frame |
| Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000310776 | 139346878 | 139347044 | Frame-shift |
| ENST00000495075 | 139346878 | 139347044 | Frame-shift |
| ENST00000310776 | 139352647 | 139352792 | Frame-shift |
| ENST00000495075 | 139352647 | 139352792 | Frame-shift |
| ENST00000310776 | 139350977 | 139351060 | In-frame |
| ENST00000495075 | 139350977 | 139351060 | In-frame |
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Infer the effects of exon skipping event on protein functional features for MRPS22 |
p-ENSG00000175110_img4.png |
| Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000310776 | 1137 | 360 | 139350977 | 139351060 | 658 | 740 | 216 | 244 |
| ENST00000495075 | 1564 | 360 | 139350977 | 139351060 | 1082 | 1164 | 216 | 244 |
| Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000310776 | 1137 | 360 | 139350977 | 139351060 | 658 | 740 | 216 | 244 |
| ENST00000495075 | 1564 | 360 | 139350977 | 139351060 | 1082 | 1164 | 216 | 244 |
| Lost protein functional features of individual exon skipping events in ROSMAP. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| P82650 | 216 | 244 | 170 | 360 | Alternative sequence | ID=VSP_056636;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.2 |
| P82650 | 216 | 244 | 170 | 360 | Alternative sequence | ID=VSP_056636;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.2 |
| P82650 | 216 | 244 | 1 | 360 | Chain | ID=PRO_0000087703;Note=28S ribosomal protein S22%2C mitochondrial |
| P82650 | 216 | 244 | 1 | 360 | Chain | ID=PRO_0000087703;Note=28S ribosomal protein S22%2C mitochondrial |
| Lost protein functional features of individual exon skipping events in MSBB. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in Mayo. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| P82650 | 216 | 244 | 170 | 360 | Alternative sequence | ID=VSP_056636;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.2 |
| P82650 | 216 | 244 | 170 | 360 | Alternative sequence | ID=VSP_056636;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.2 |
| P82650 | 216 | 244 | 1 | 360 | Chain | ID=PRO_0000087703;Note=28S ribosomal protein S22%2C mitochondrial |
| P82650 | 216 | 244 | 1 | 360 | Chain | ID=PRO_0000087703;Note=28S ribosomal protein S22%2C mitochondrial |
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3'-UTR located exon skipping events that lost miRNA binding sites in MRPS22 |
| 3'-UTR exon skipping evnets lost miRNA binding. |
| Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
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SNVs in the skipped exons for MRPS22 |
| - Differential PSIs between mutated versus non-mutated samples. |
| - Depth of Coverage in the skipped exon of the mutated samples. |
| - Sashimi plot in the skipped exon of the mutated samples. |
| - Non-synonymous mutations located in the skipped exons. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for MRPS22 |
| Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
| AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MRPS22 |
| sQTL information located at the skipped exons. |
| Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for MRPS22 |
| Correlated RBP and related information. |
| Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for MRPS22 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MRPS22 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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