ExonSkipAD Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

Gene summary

leaf

Gene structures and expression levels

leaf

Exon skipping events with PSIs in RPSMAP, MSBB, and Mayo

leaf

Open reading frame (ORF) annotation in the exon skipping event

leaf

Exon skipping events in the canonical protein sequence

leaf

3'-UTR located exon skipping events lost miRNA binding sites

leaf

SNVs in the skipped exons with depth of coverage

leaf

AD stage-associated exon skipping events

leaf

Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

leaf

Correlation with RNA binding proteins (RBPs)

leaf

Related drugs with this gene

leaf

Related diseases with this gene

Gene summary for ENAH

check button Gene summary
Gene informationGene symbol

ENAH

Gene ID

55740

Gene nameENAH actin regulator
SynonymsENA|MENA|NDPP1
Cytomap

1q42.12

Type of geneprotein-coding
Descriptionprotein enabled homologenabled homologmammalian enabled variant 11amammalian enabled variant pan
Modification date20200313
UniProtAcc

A0A075B6E5,

A0A097PIC4,

A0A097PID1,

A0A0U1RQP7,

A0A0U1RRM6,

Q8N8S7,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

Gene structures and expression levels for ENAH

check buttonSkipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

ENSG00000154380
check button Differentially expressed gene analysis across multiple brain tissues between AD and control.
Tissue typeDEG directionBase mean exp.log2FC(AD/control)P-valueAdj. p-value

check button Differentially expressed isoform analysis across multiple brain tissues between AD and control.
gencode gene structure
Tissue typeDEG directionENSTTranscript info.Base mean exp.log2FC(AD/control)P-valueAdjc. p-value
PGUPENST00000483952.1ENAH-206:lncRNA:ENAH1.539225e+011.114556e+003.542802e-046.908790e-03
TCUPENST00000366843.6ENAH-203:protein_coding:ENAH2.999509e+021.300847e+002.869653e-055.951124e-04

check button Landscape of isoform expressions across multiple brain tissues between AD and control.
gencode gene structure

Top

Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for ENAH

check button Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap).
boxplot

check button All exon skipping events in AD cohorts.
Exon skip IDchrExons involved in exon skippingSkipped exon
exon_skip_111293chr1225514596:225514900:225517196:225517990:225519198:225519298225517196:225517990
exon_skip_126813chr1225514596:225514900:225517196:225517990:225519198:225519565225517196:225517990
exon_skip_144405chr1225530554:225530638:225535507:225535563:225554906:225555083225535507:225535563
exon_skip_214549chr1225530554:225530638:225535507:225535563:225554906:225555055225535507:225535563
exon_skip_229914chr1225500992:225501070:225504991:225505053:225507951:225508017225504991:225505053
exon_skip_247972chr1225530554:225530638:225531046:225531057:225554906:225555055225531046:225531057
exon_skip_252236chr1225514596:225514900:225517196:225517306:225519198:225519565225517196:225517306
exon_skip_36653chr1225530554:225530638:225531046:225531057:225554906:225555083225531046:225531057
exon_skip_38617chr1225497634:225497812:225498347:225498404:225500992:225501070225498347:225498404
exon_skip_40793chr1225514596:225514900:225517196:225517306:225519198:225519298225517196:225517306

check button Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control.
psi tcga
Exon skipping informationTissue typeAvg(PSIs) in ADAvg(PSIs) in controlDifference (PSI)Adj. p-value
exon_skip_111293ROSMAP_PCC7.874074e-018.896154e-01-1.022080e-012.205437e-03
exon_skip_126813ROSMAP_HCC6.958904e-017.998718e-01-1.039814e-012.473230e-04
exon_skip_111293Mayo_TC6.683099e-018.704918e-01-2.021819e-018.091598e-07


Top

Open reading frame (ORF) annotation in the exon skipping event for ENAH

check button Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000366844225504991225505053In-frame
ENST00000366844225517196225517306In-frame

check button Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000366844225504991225505053In-frame
ENST00000366844225517196225517306In-frame

check button Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000366844225498347225498404Frame-shift
ENST00000366844225504991225505053In-frame
ENST00000366844225517196225517306In-frame

Top

Infer the effects of exon skipping event on protein functional features for ENAH

p-ENSG00000154380_img4.png
boxplot

check button Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003668441318559122551719622551730612551364267304
ENST000003668441318559122550499122550505319912052513533

check button Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003668441318559122551719622551730612551364267304
ENST000003668441318559122550499122550505319912052513533

check button Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003668441318559122551719622551730612551364267304
ENST000003668441318559122550499122550505319912052513533

check button Lost protein functional features of individual exon skipping events in ROSMAP.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N8S7267304268304Alternative sequenceID=VSP_053772;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:23129656;Dbxref=PMID:23129656
Q8N8S72673041591ChainID=PRO_0000086971;Note=Protein enabled homolog
Q8N8S7513533513533Alternative sequenceID=VSP_053773;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:23129656;Dbxref=PMID:23129656
Q8N8S7513533514534Alternative sequenceID=VSP_010564;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005,ECO:0000303|Ref.1;Dbxref=PMID:14702039,PMID:15489334,PMID:1
Q8N8S75135331591ChainID=PRO_0000086971;Note=Protein enabled homolog
Q8N8S7513533391588RegionNote=EVH2

check button Lost protein functional features of individual exon skipping events in MSBB.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N8S7267304268304Alternative sequenceID=VSP_053772;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:23129656;Dbxref=PMID:23129656
Q8N8S72673041591ChainID=PRO_0000086971;Note=Protein enabled homolog
Q8N8S7513533513533Alternative sequenceID=VSP_053773;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:23129656;Dbxref=PMID:23129656
Q8N8S7513533514534Alternative sequenceID=VSP_010564;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005,ECO:0000303|Ref.1;Dbxref=PMID:14702039,PMID:15489334,PMID:1
Q8N8S75135331591ChainID=PRO_0000086971;Note=Protein enabled homolog
Q8N8S7513533391588RegionNote=EVH2

check button Lost protein functional features of individual exon skipping events in Mayo.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N8S7267304268304Alternative sequenceID=VSP_053772;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:23129656;Dbxref=PMID:23129656
Q8N8S72673041591ChainID=PRO_0000086971;Note=Protein enabled homolog
Q8N8S7513533513533Alternative sequenceID=VSP_053773;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:23129656;Dbxref=PMID:23129656
Q8N8S7513533514534Alternative sequenceID=VSP_010564;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005,ECO:0000303|Ref.1;Dbxref=PMID:14702039,PMID:15489334,PMID:1
Q8N8S75135331591ChainID=PRO_0000086971;Note=Protein enabled homolog
Q8N8S7513533391588RegionNote=EVH2


Top

3'-UTR located exon skipping events that lost miRNA binding sites in ENAH

check button 3'-UTR exon skipping evnets lost miRNA binding.
Tissue typeENSTExon skip startExon skip endmicroRNABinding site by TargetScanBinding type by TargetScanBdinding site by miRandaScore of miRandaEnergy by miRanda

Top

SNVs in the skipped exons for ENAH

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Depth of Coverage in the skipped exon of the mutated samples.

check button - Sashimi plot in the skipped exon of the mutated samples.

check button - Non-synonymous mutations located in the skipped exons.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

Top

AD stage-associated exon skippint events for ENAH

check button Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR).
AD stage infoCohortTissueSE idCoefficient P-valueChromosomeStrandE1 startE1 endSkipped startSkipped endE2 startE2 end
ADstageMSBBIFGexon_skip_229914-3.809953e-014.546895e-02chr1-225500992225501070225504991225505053225507951225508017
ADstageROSMAPPCCexon_skip_229914-3.409066e-012.990000e-07chr1-225500992225501070225504991225505053225507951225508017
ADstageROSMAPPCCexon_skip_36653-3.038830e-015.690000e-06chr1-225530554225530638225531046225531057225554906225555083
CDRMSBBIFGexon_skip_229914-4.238052e-012.461174e-02chr1-225500992225501070225504991225505053225507951225508017

Top

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ENAH

check button sQTL information located at the skipped exons.
Tissue typeExon skip IDSNP idLocationP-valueFDR

Top

Correlation with RNA binding proteins (RBPs) for ENAH

check button Correlated RBP and related information.
Tissue typeRBP nameExon skip IDCorrelation coeifficientP-value
CBHNRNPA0exon_skip_366534.653381e-011.356819e-09
CBRALYLexon_skip_366534.594990e-012.306416e-09
FLMSI1exon_skip_36653-4.517023e-019.719800e-11
FLHNRNPA0exon_skip_366534.768018e-015.997023e-12
FLRALYLexon_skip_366535.152856e-015.258422e-14
HCCRBMS2exon_skip_36653-5.028448e-017.756209e-19
HCCRBMS3exon_skip_36653-4.330438e-017.359941e-14
HCCMSI1exon_skip_36653-5.676273e-011.340119e-24
HCCTRNAU1APexon_skip_36653-4.235028e-012.903824e-13
HCCZFP36exon_skip_36653-4.307171e-011.032691e-13
IFGPABPN1Lexon_skip_229914-4.280648e-012.305795e-02
IFGELAVL1exon_skip_229914-4.387669e-011.950483e-02
IFGRBM5exon_skip_229914-5.044029e-016.198340e-03
IFGIGF2BP3exon_skip_229914-5.092277e-015.646702e-03
IFGFUBP1exon_skip_229914-5.054341e-016.076752e-03
IFGHNRNPA0exon_skip_366535.093589e-015.632305e-03
PCCRALYLexon_skip_2299144.127336e-012.982591e-10
PCCRBMS2exon_skip_36653-6.530561e-011.602691e-27
PCCMSI1exon_skip_36653-4.698778e-013.310488e-13
PCCZFP36exon_skip_36653-4.425184e-011.007748e-11
PCCRALYLexon_skip_366535.016062e-014.224449e-15
PGRALYLexon_skip_2299144.710366e-016.957347e-13
PGCELF1exon_skip_2299144.018797e-011.780605e-09
PGNOVA1exon_skip_2299144.042814e-011.395434e-09
PGHNRNPA0exon_skip_366534.384116e-014.334519e-10
PGRALYLexon_skip_366535.908581e-018.513497e-19
STGRALYLexon_skip_2299144.764414e-012.363337e-06
STGZFP36exon_skip_36653-4.380735e-012.752816e-05
TCSRSF2exon_skip_1112934.166808e-016.705789e-07
TCRBM3exon_skip_1112934.727413e-011.043521e-08
TCKHDRBS2exon_skip_1112934.775945e-017.017182e-09
TCRBM24exon_skip_1112934.062122e-011.347118e-06
TCRBM45exon_skip_1112934.240739e-014.038691e-07
TCRALYLexon_skip_1112934.407091e-011.233581e-07
TCSRSF5exon_skip_1112934.063192e-011.337714e-06
TCNOVA1exon_skip_1112935.443867e-011.508840e-11
TCHNRNPA0exon_skip_2479726.419467e-017.630744e-20
TCHNRNPDexon_skip_2479725.566959e-012.546139e-14
TCRALYLexon_skip_2479727.253394e-013.023415e-27

Top

RelatedDrugs for ENAH

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ENAH

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource