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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for ACP5 |
Gene summary |
Gene information | Gene symbol | ACP5 | Gene ID | 54 |
Gene name | acid phosphatase 5, tartrate resistant | |
Synonyms | HPAP|TRACP5a|TRACP5b|TRAP|TrATPase | |
Cytomap | 19p13.2 | |
Type of gene | protein-coding | |
Description | tartrate-resistant acid phosphatase type 5human purple acid phosphatasetartrate-resistant acid ATPasetartrate-resistant acid phosphatase 5atartrate-resistant acid phosphatase 5b | |
Modification date | 20200313 | |
UniProtAcc | ||
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for ACP5 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
PG | UP | ENST00000648477.1 | ACP5-212:protein_coding:ACP5 | 5.860069e+00 | 9.913640e-01 | 3.855373e-05 | 1.354601e-03 |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for ACP5 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_213343 | chr19 | 11577593:11577679:11578585:11578657:11578844:11578923 | 11578585:11578657 |
exon_skip_230461 | chr19 | 11577593:11577679:11578585:11578764:11578844:11578923 | 11578585:11578764 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for ACP5 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000218758 | 11578585 | 11578657 | 3UTR-3UTR |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000218758 | 11578585 | 11578657 | 3UTR-3UTR |
ENST00000592828 | 11578585 | 11578764 | 3UTR-3UTR |
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Infer the effects of exon skipping event on protein functional features for ACP5 |
p-ENSG00000102575_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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3'-UTR located exon skipping events that lost miRNA binding sites in ACP5 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
Mayo | ENST00000592828 | 11578585 | 11578764 | hsa-miR-4677-3p | chr19:11578709-11578716 | 8mer-1a | chr19:11578702-11578725 | 167.00 | -34.67 |
Mayo | ENST00000592828 | 11578585 | 11578764 | hsa-miR-6716-5p | chr19:11578754-11578761 | 8mer-1a | chr19:11578742-11578761 | 160.00 | -34.18 |
Mayo | ENST00000218758 | 11578585 | 11578657 | hsa-miR-7515 | chr19:11578646-11578653 | 8mer-1a | chr19:11578643-11578661 | 156.00 | -25.11 |
Mayo | ENST00000592828 | 11578585 | 11578764 | hsa-miR-7515 | chr19:11578646-11578653 | 8mer-1a | chr19:11578643-11578661 | 156.00 | -25.11 |
Mayo | ENST00000218758 | 11578585 | 11578657 | hsa-miR-3140-5p | chr19:11578637-11578644 | 8mer-1a | chr19:11578637-11578659 | 155.00 | -24.53 |
Mayo | ENST00000592828 | 11578585 | 11578764 | hsa-miR-3140-5p | chr19:11578637-11578644 | 8mer-1a | chr19:11578637-11578659 | 155.00 | -24.53 |
ROSMAP | ENST00000218758 | 11578585 | 11578657 | hsa-miR-7515 | chr19:11578646-11578653 | 8mer-1a | chr19:11578634-11578654 | 153.00 | -21.35 |
ROSMAP | ENST00000218758 | 11578585 | 11578657 | hsa-miR-3140-5p | chr19:11578637-11578644 | 8mer-1a | chr19:11578634-11578654 | 153.00 | -21.35 |
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SNVs in the skipped exons for ACP5 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for ACP5 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ACP5 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for ACP5 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for ACP5 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
P13686 | approved|investigational | DB02325 | Isopropyl alcohol | small molecule | P13686 |
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RelatedDiseases for ACP5 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |