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Open reading frame (ORF) annotation in the exon skipping event | |
3'-UTR located exon skipping events lost miRNA binding sites | |
Splicing Quantitative Trait Loci (sQTLs) in the skipped exons | |
Gene summary for SENP1 |
Gene summary |
Gene information | Gene symbol | SENP1 | Gene ID | 29843 |
Gene name | SUMO specific peptidase 1 | |
Synonyms | SuPr-2 | |
Cytomap | 12q13.11 | |
Type of gene | protein-coding | |
Description | sentrin-specific protease 1SUMO1/sentrin specific peptidase 1SUMO1/sentrin specific protease 1sentrin/SUMO-specific protease SENP1 | |
Modification date | 20200313 | |
UniProtAcc | ||
Context | - 29862363(SENP1 and SENP2 regulate SUMOylation of amyloid precursor protein) |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for SENP1 |
Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Differentially expressed gene analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for SENP1 |
Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
All exon skipping events in AD cohorts. |
Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
exon_skip_101576 | chr12 | 48097994:48098124:48101469:48101516:48106028:48106046 | 48101469:48101516 |
exon_skip_158523 | chr12 | 48088801:48088960:48089163:48089293:48096343:48096427 | 48089163:48089293 |
exon_skip_188200 | chr12 | 48074690:48074793:48083591:48083762:48088801:48088960 | 48083591:48083762 |
exon_skip_228029 | chr12 | 48096343:48096427:48097994:48098124:48101469:48101472 | 48097994:48098124 |
exon_skip_233083 | chr12 | 48097994:48098124:48101469:48101516:48105402:48105834 | 48101469:48101516 |
exon_skip_287970 | chr12 | 48088801:48088960:48096343:48096427:48097994:48098034 | 48096343:48096427 |
exon_skip_78556 | chr12 | 48088801:48088960:48089163:48089293:48096343:48096413 | 48089163:48089293 |
exon_skip_99618 | chr12 | 48065596:48065680:48066927:48066965:48071667:48071721 | 48066927:48066965 |
Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for SENP1 |
Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000448372 | 48083591 | 48083762 | Frame-shift |
ENST00000549518 | 48083591 | 48083762 | Frame-shift |
ENST00000448372 | 48097994 | 48098124 | Frame-shift |
ENST00000549518 | 48097994 | 48098124 | Frame-shift |
ENST00000448372 | 48066927 | 48066965 | In-frame |
ENST00000549518 | 48066927 | 48066965 | In-frame |
Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000448372 | 48083591 | 48083762 | Frame-shift |
ENST00000549518 | 48083591 | 48083762 | Frame-shift |
ENST00000448372 | 48066927 | 48066965 | In-frame |
ENST00000549518 | 48066927 | 48066965 | In-frame |
Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
ENST | Start of skipped exon | End of skipped exon | ORF |
ENST00000448372 | 48083591 | 48083762 | Frame-shift |
ENST00000549518 | 48083591 | 48083762 | Frame-shift |
ENST00000448372 | 48096343 | 48096427 | Frame-shift |
ENST00000549518 | 48096343 | 48096427 | Frame-shift |
ENST00000448372 | 48097994 | 48098124 | Frame-shift |
ENST00000549518 | 48097994 | 48098124 | Frame-shift |
ENST00000448372 | 48066927 | 48066965 | In-frame |
ENST00000549518 | 48066927 | 48066965 | In-frame |
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Infer the effects of exon skipping event on protein functional features for SENP1 |
p-ENSG00000079387_img4.png |
Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000448372 | 4696 | 644 | 48066927 | 48066965 | 1392 | 1429 | 332 | 344 |
ENST00000549518 | 2277 | 644 | 48066927 | 48066965 | 1321 | 1358 | 332 | 344 |
Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000448372 | 4696 | 644 | 48066927 | 48066965 | 1392 | 1429 | 332 | 344 |
ENST00000549518 | 2277 | 644 | 48066927 | 48066965 | 1321 | 1358 | 332 | 344 |
Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
ENST00000448372 | 4696 | 644 | 48066927 | 48066965 | 1392 | 1429 | 332 | 344 |
ENST00000549518 | 2277 | 644 | 48066927 | 48066965 | 1321 | 1358 | 332 | 344 |
Lost protein functional features of individual exon skipping events in ROSMAP. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q9P0U3 | 332 | 344 | 1 | 644 | Chain | ID=PRO_0000101716;Note=Sentrin-specific protease 1 |
Q9P0U3 | 332 | 344 | 1 | 644 | Chain | ID=PRO_0000101716;Note=Sentrin-specific protease 1 |
Lost protein functional features of individual exon skipping events in MSBB. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q9P0U3 | 332 | 344 | 1 | 644 | Chain | ID=PRO_0000101716;Note=Sentrin-specific protease 1 |
Q9P0U3 | 332 | 344 | 1 | 644 | Chain | ID=PRO_0000101716;Note=Sentrin-specific protease 1 |
Lost protein functional features of individual exon skipping events in Mayo. |
UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
Q9P0U3 | 332 | 344 | 1 | 644 | Chain | ID=PRO_0000101716;Note=Sentrin-specific protease 1 |
Q9P0U3 | 332 | 344 | 1 | 644 | Chain | ID=PRO_0000101716;Note=Sentrin-specific protease 1 |
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3'-UTR located exon skipping events that lost miRNA binding sites in SENP1 |
3'-UTR exon skipping evnets lost miRNA binding. |
Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
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SNVs in the skipped exons for SENP1 |
- Differential PSIs between mutated versus non-mutated samples. |
- Depth of Coverage in the skipped exon of the mutated samples. |
- Sashimi plot in the skipped exon of the mutated samples. |
- Non-synonymous mutations located in the skipped exons. |
Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
- Non-synonymous mutations located in the skipped exons in CCLE. |
Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for SENP1 |
Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for SENP1 |
sQTL information located at the skipped exons. |
Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for SENP1 |
Correlated RBP and related information. |
Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for SENP1 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SENP1 |
Diseases associated with this gene. (DisGeNet 4.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |