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| Open reading frame (ORF) annotation in the exon skipping event |
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| 3'-UTR located exon skipping events lost miRNA binding sites |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
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Gene summary for SEC61G |
 Gene summary |
| Gene information | Gene symbol | SEC61G | Gene ID | 23480 |
| Gene name | SEC61 translocon subunit gamma | |
| Synonyms | SSS1 | |
| Cytomap | 7p11.2 | |
| Type of gene | protein-coding | |
| Description | protein transport protein Sec61 subunit gammaSEC61 translocon gamma subunitSec61 gamma subunitprotein transport protein SEC61 gamma subunit | |
| Modification date | 20200313 | |
| UniProtAcc | A0A024QYZ0, P60059, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for SEC61G |
| Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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ENSG00000132432
| Differentially expressed gene analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
| Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
| Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for SEC61G |
| Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
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| All exon skipping events in AD cohorts. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
| exon_skip_175809 | chr7 | 54752257:54752420:54755779:54755881:54757495:54757590 | 54755779:54755881 |
| exon_skip_59175 | chr7 | 54757495:54757594:54759158:54759334:54759791:54759974 | 54759158:54759334 |
| exon_skip_84256 | chr7 | 54755779:54755881:54757495:54757594:54759158:54759211 | 54757495:54757594 |
| Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
| Exon skipping information | Tissue type | Avg(PSIs) in AD | Avg(PSIs) in control | Difference (PSI) | Adj. p-value |
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Open reading frame (ORF) annotation in the exon skipping event for SEC61G |
| Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000352861 | 54757495 | 54757594 | 3UTR-3CDS |
| ENST00000415949 | 54757495 | 54757594 | 3UTR-3CDS |
| ENST00000415949 | 54759158 | 54759334 | 3UTR-3UTR |
| Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000352861 | 54757495 | 54757594 | 3UTR-3CDS |
| ENST00000415949 | 54757495 | 54757594 | 3UTR-3CDS |
| ENST00000415949 | 54759158 | 54759334 | 3UTR-3UTR |
| ENST00000352861 | 54755779 | 54755881 | Frame-shift |
| ENST00000395535 | 54755779 | 54755881 | Frame-shift |
| ENST00000415949 | 54755779 | 54755881 | Frame-shift |
| ENST00000450622 | 54755779 | 54755881 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for SEC61G |
p-ENSG00000132432_img4.png |
| Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Lost protein functional features of individual exon skipping events in ROSMAP. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in MSBB. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in Mayo. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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3'-UTR located exon skipping events that lost miRNA binding sites in SEC61G |
| 3'-UTR exon skipping evnets lost miRNA binding. |
| Tissue type | ENST | Exon skip start | Exon skip end | microRNA | Binding site by TargetScan | Binding type by TargetScan | Bdinding site by miRanda | Score of miRanda | Energy by miRanda |
| Mayo | ENST00000415949 | 54759158 | 54759334 | hsa-miR-1825 | chr7:54759194-54759201 | 8mer-1a | chr7:54759181-54759203 | 161.00 | -20.51 |
| Mayo | ENST00000415949 | 54759158 | 54759334 | hsa-miR-671-3p | chr7:54759224-54759231 | 8mer-1a | chr7:54759209-54759231 | 157.00 | -29.86 |
| Mayo | ENST00000415949 | 54759158 | 54759334 | hsa-miR-12120 | chr7:54759276-54759283 | 8mer-1a | chr7:54759257-54759283 | 146.00 | -24.11 |
| ROSMAP | ENST00000415949 | 54759158 | 54759334 | hsa-miR-1825 | chr7:54759194-54759201 | 8mer-1a | chr7:54759181-54759203 | 161.00 | -20.51 |
| ROSMAP | ENST00000415949 | 54759158 | 54759334 | hsa-miR-671-3p | chr7:54759224-54759231 | 8mer-1a | chr7:54759209-54759231 | 157.00 | -29.86 |
| ROSMAP | ENST00000415949 | 54759158 | 54759334 | hsa-miR-12120 | chr7:54759276-54759283 | 8mer-1a | chr7:54759257-54759283 | 146.00 | -24.11 |
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SNVs in the skipped exons for SEC61G |
| - Differential PSIs between mutated versus non-mutated samples. |
| - Depth of Coverage in the skipped exon of the mutated samples. |
| - Sashimi plot in the skipped exon of the mutated samples. |
| - Non-synonymous mutations located in the skipped exons. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
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AD stage-associated exon skippint events for SEC61G |
| Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR). |
| AD stage info | Cohort | Tissue | SE id | Coefficient | P-value | Chromosome | Strand | E1 start | E1 end | Skipped start | Skipped end | E2 start | E2 end |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for SEC61G |
| sQTL information located at the skipped exons. |
| Tissue type | Exon skip ID | SNP id | Location | P-value | FDR |
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Correlation with RNA binding proteins (RBPs) for SEC61G |
| Correlated RBP and related information. |
| Tissue type | RBP name | Exon skip ID | Correlation coeifficient | P-value |
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RelatedDrugs for SEC61G |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SEC61G |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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