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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in RPSMAP, MSBB, and Mayo

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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3'-UTR located exon skipping events lost miRNA binding sites

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SNVs in the skipped exons with depth of coverage

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AD stage-associated exon skipping events

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Correlation with RNA binding proteins (RBPs)

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Related drugs with this gene

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Related diseases with this gene

Gene summary for ADGRL2

check button Gene summary
Gene informationGene symbol

ADGRL2

Gene ID

23266

Gene nameadhesion G protein-coupled receptor L2
SynonymsCIRL2|CL2|LEC1|LPHH1|LPHN2
Cytomap

1p31.1

Type of geneprotein-coding
Descriptionadhesion G protein-coupled receptor L2calcium-independent alpha-latrotoxin receptor 2latrophilin homolog 1latrophilin-2lectomedin-1
Modification date20200313
UniProtAcc

B1ALU1,

B1ALU3,

H0Y3V3,

H0Y5C0,

O95490,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Gene structures and expression levels for ADGRL2

check buttonSkipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

ENSG00000117114
check button Differentially expressed gene analysis across multiple brain tissues between AD and control.
Tissue typeDEG directionBase mean exp.log2FC(AD/control)P-valueAdj. p-value

check button Differentially expressed isoform analysis across multiple brain tissues between AD and control.
gencode gene structure
Tissue typeDEG directionENSTTranscript info.Base mean exp.log2FC(AD/control)P-valueAdjc. p-value
PGDOWNENST00000473719.5ADGRL2-219:lncRNA:ADGRL21.158287e+01-8.102533e-015.247023e-063.129843e-04
PGDOWNENST00000449420.5ADGRL2-213:protein_coding:ADGRL27.629068e+01-1.061876e+003.465699e-033.531922e-02
CBDOWNENST00000469377.6ADGRL2-217:lncRNA:ADGRL25.059414e+00-1.466066e+001.571820e-037.545367e-03
TCUPENST00000319517.10ADGRL2-201:protein_coding:ADGRL21.382744e+021.417001e+001.982413e-031.666724e-02

check button Landscape of isoform expressions across multiple brain tissues between AD and control.
gencode gene structure

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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for ADGRL2

check button Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap).
boxplot

check button All exon skipping events in AD cohorts.
Exon skip IDchrExons involved in exon skippingSkipped exon
exon_skip_117633chr181980795:81980839:81981124:81981150:81981808:8198197681981124:81981150
exon_skip_132198chr181836885:81837057:81907017:81907230:81936728:8193683781907017:81907230
exon_skip_141357chr181761811:81761852:81836885:81837057:81907017:8190723081836885:81837057
exon_skip_164916chr181979922:81979960:81980795:81980839:81981808:8198197681980795:81980839
exon_skip_172441chr181984583:81984711:81985259:81985355:81990391:8199068181985259:81985355
exon_skip_185745chr181987289:81987341:81989657:81989709:81990391:8199068181989657:81989709
exon_skip_192626chr181445021:81445089:81579300:81579380:81580876:8158098081579300:81579380
exon_skip_194320chr181951965:81952142:81952987:81953025:81955877:8195606081952987:81953025
exon_skip_210075chr181951962:81952142:81952987:81953025:81955877:8195606081952987:81953025
exon_skip_230464chr181985259:81985355:81987260:81987341:81990391:8199068181987260:81987341
exon_skip_282885chr181986901:81987029:81987869:81987886:81990391:8199068181987869:81987886
exon_skip_283928chr181951957:81952142:81952987:81953025:81955877:8195606081952987:81953025
exon_skip_44717chr181984583:81984711:81985259:81985355:81990391:8199219681985259:81985355
exon_skip_73328chr181936728:81936837:81942034:81942045:81942969:8194376981942034:81942045
exon_skip_73456chr181985259:81985355:81986901:81987029:81990391:8199068181986901:81987029
exon_skip_73494chr181985259:81985355:81987289:81987341:81990391:8199068181987289:81987341
exon_skip_75525chr181955877:81956060:81966058:81966183:81966404:8196643581966058:81966183

check button Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control.
psi tcga
Exon skipping informationTissue typeAvg(PSIs) in ADAvg(PSIs) in controlDifference (PSI)Adj. p-value
exon_skip_194320Mayo_TC5.458537e-016.896364e-01-1.437827e-012.329503e-07


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Open reading frame (ORF) annotation in the exon skipping event for ADGRL2

check button Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003707178195298781953025In-frame
ENST000003707288195298781953025In-frame
ENST000003707178198690181987029In-frame
ENST000003707288198690181987029In-frame

check button Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000037072881836885818370575CDS-5UTR
ENST000003707178190701781907230Frame-shift
ENST000003707288190701781907230Frame-shift
ENST000003707178195298781953025In-frame
ENST000003707288195298781953025In-frame
ENST000003707178198690181987029In-frame
ENST000003707288198690181987029In-frame

check button Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000037072881836885818370575CDS-5UTR
ENST000003707178195298781953025In-frame
ENST000003707288195298781953025In-frame
ENST000003707178196605881966183In-frame
ENST000003707288196605881966183In-frame
ENST000003707178198690181987029In-frame
ENST000003707288198690181987029In-frame

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Infer the effects of exon skipping event on protein functional features for ADGRL2

p-ENSG00000117114_img4.png
boxplot

check button Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000037071758901459819529878195302520002037594607
ENST0000037072863191459819529878195302524292466594607
ENST000003707175890145981986901819870293714384111661208
ENST000003707286319145981986901819870294143427011661208

check button Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000037071758901459819529878195302520002037594607
ENST0000037072863191459819529878195302524292466594607
ENST000003707175890145981986901819870293714384111661208
ENST000003707286319145981986901819870294143427011661208

check button Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000037071758901459819529878195302520002037594607
ENST0000037072863191459819529878195302524292466594607
ENST0000037071758901459819660588196618322232347669710
ENST0000037072863191459819660588196618326522776669710
ENST000003707175890145981986901819870293714384111661208
ENST000003707286319145981986901819870294143427011661208

check button Lost protein functional features of individual exon skipping events in ROSMAP.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O95490594607595607Alternative sequenceID=VSP_010104;Note=In isoform 2%2C isoform 3%2C isoform 4 and isoform 7. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O95490594607595607Alternative sequenceID=VSP_010104;Note=In isoform 2%2C isoform 3%2C isoform 4 and isoform 7. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O95490594607261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O95490594607261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549059460726851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O9549059460726851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O954901166120811371459Alternative sequenceID=VSP_010106;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3
O954901166120811371459Alternative sequenceID=VSP_010106;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3
O954901166120811671209Alternative sequenceID=VSP_010107;Note=In isoform 2%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O954901166120811671209Alternative sequenceID=VSP_010107;Note=In isoform 2%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O9549011661208261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549011661208261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O954901166120810841459Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000305;evidence=ECO:0000305
O954901166120810841459Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000305;evidence=ECO:0000305

check button Lost protein functional features of individual exon skipping events in MSBB.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O95490594607595607Alternative sequenceID=VSP_010104;Note=In isoform 2%2C isoform 3%2C isoform 4 and isoform 7. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O95490594607595607Alternative sequenceID=VSP_010104;Note=In isoform 2%2C isoform 3%2C isoform 4 and isoform 7. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O95490594607261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O95490594607261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549059460726851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O9549059460726851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O954901166120811371459Alternative sequenceID=VSP_010106;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3
O954901166120811371459Alternative sequenceID=VSP_010106;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3
O954901166120811671209Alternative sequenceID=VSP_010107;Note=In isoform 2%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O954901166120811671209Alternative sequenceID=VSP_010107;Note=In isoform 2%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O9549011661208261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549011661208261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O954901166120810841459Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000305;evidence=ECO:0000305
O954901166120810841459Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000305;evidence=ECO:0000305

check button Lost protein functional features of individual exon skipping events in Mayo.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
O95490594607595607Alternative sequenceID=VSP_010104;Note=In isoform 2%2C isoform 3%2C isoform 4 and isoform 7. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O95490594607595607Alternative sequenceID=VSP_010104;Note=In isoform 2%2C isoform 3%2C isoform 4 and isoform 7. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O95490594607261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O95490594607261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549059460726851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O9549059460726851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O95490669710261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O95490669710261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549066971026851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O9549066971026851Topological domainNote=Extracellular;Ontology_term=ECO:0000305;evidence=ECO:0000305
O954901166120811371459Alternative sequenceID=VSP_010106;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3
O954901166120811371459Alternative sequenceID=VSP_010106;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3
O954901166120811671209Alternative sequenceID=VSP_010107;Note=In isoform 2%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O954901166120811671209Alternative sequenceID=VSP_010107;Note=In isoform 2%2C isoform 4 and isoform 5. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:10030676,ECO:0000303|Ref.3;Dbxref=PMID:10030676
O9549011661208261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O9549011661208261459ChainID=PRO_0000012910;Note=Adhesion G protein-coupled receptor L2
O954901166120810841459Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000305;evidence=ECO:0000305
O954901166120810841459Topological domainNote=Cytoplasmic;Ontology_term=ECO:0000305;evidence=ECO:0000305


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3'-UTR located exon skipping events that lost miRNA binding sites in ADGRL2

check button 3'-UTR exon skipping evnets lost miRNA binding.
Tissue typeENSTExon skip startExon skip endmicroRNABinding site by TargetScanBinding type by TargetScanBdinding site by miRandaScore of miRandaEnergy by miRanda

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SNVs in the skipped exons for ADGRL2

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Depth of Coverage in the skipped exon of the mutated samples.

check button - Sashimi plot in the skipped exon of the mutated samples.

check button - Non-synonymous mutations located in the skipped exons.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

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AD stage-associated exon skippint events for ADGRL2

check button Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR).
AD stage infoCohortTissueSE idCoefficient P-valueChromosomeStrandE1 startE1 endSkipped startSkipped endE2 startE2 end

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ADGRL2

check button sQTL information located at the skipped exons.
Tissue typeExon skip IDSNP idLocationP-valueFDR
CBexon_skip_73456rs1022974chr1:820039252.864721e-043.929283e-02

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Correlation with RNA binding proteins (RBPs) for ADGRL2

check button Correlated RBP and related information.
Tissue typeRBP nameExon skip IDCorrelation coeifficientP-value
HCCRBM5exon_skip_72550-4.607450e-013.164818e-14
HCCRBM5exon_skip_73328-5.120599e-015.597337e-18
HCCPABPN1exon_skip_283928-5.361204e-015.679671e-21
HCCRBMS2exon_skip_73456-4.743569e-012.488421e-16
HCCRBM6exon_skip_73456-4.116224e-012.666959e-12
HCCQKIexon_skip_73456-4.471577e-011.759634e-14
HCCKHDRBS3exon_skip_73456-4.112673e-012.796017e-12
HCCRBM45exon_skip_73456-4.047122e-016.623672e-12
IFGPABPN1Lexon_skip_283928-5.989383e-017.585409e-04
IFGELAVL4exon_skip_1649166.177361e-017.723102e-04
IFGKHDRBS2exon_skip_1649164.980304e-019.620167e-03
IFGKHDRBS3exon_skip_1649164.517259e-012.052465e-02
IFGRBM24exon_skip_1649164.843106e-011.216991e-02
IFGNOVA1exon_skip_1649164.948566e-011.016635e-02
IFGRALYLexon_skip_734564.428843e-012.346037e-02
IFGSRSF2exon_skip_2828854.958272e-011.171562e-02
IFGRBM3exon_skip_2828854.243744e-013.448574e-02
PCCRBMS2exon_skip_73456-6.478984e-011.142257e-25
PCCRBMS3exon_skip_73456-4.208983e-013.649783e-10
PCCRBM6exon_skip_73456-4.661007e-012.132180e-12
PCCPCBP4exon_skip_73456-4.010261e-012.781902e-09
PCCQKIexon_skip_73456-4.905689e-019.456686e-14
PCCZFP36exon_skip_73456-5.292304e-014.028891e-16
PCCPABPC1exon_skip_73456-4.853329e-011.881062e-13
TCRBM3exon_skip_1943204.525323e-012.827861e-08
TCMBNL1exon_skip_1943204.407346e-017.049068e-08
TCNUP42exon_skip_1943207.344073e-011.756531e-24
TCELAVL4exon_skip_1649166.382582e-017.641989e-18
TCKHDRBS2exon_skip_1649165.933669e-014.614606e-15
TCKHDRBS3exon_skip_1649166.039072e-011.122701e-15
TCRBM24exon_skip_1649165.955925e-013.438601e-15
TCNOVA1exon_skip_1649164.740818e-011.947840e-09
TCRBMS2exon_skip_73456-5.935657e-013.605467e-15
TCSRSF2exon_skip_734565.663526e-011.132864e-13
TCMBNL1exon_skip_734564.183138e-011.643772e-07
TCHNRNPKexon_skip_734564.008895e-015.829910e-07
TCKHDRBS3exon_skip_734567.549824e-015.450698e-28
TCHNRNPDLexon_skip_734565.052664e-019.089944e-11
TCRBM45exon_skip_734566.230915e-015.817770e-17
TCNUP42exon_skip_734566.897988e-018.399613e-22
TCRALYLexon_skip_734568.482550e-012.612076e-41
TCPTBP3exon_skip_734564.340373e-014.923951e-08
TCCELF1exon_skip_734565.582438e-012.980555e-13
TCNOVA1exon_skip_734567.866745e-019.412312e-32

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RelatedDrugs for ADGRL2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ADGRL2

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource