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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in RPSMAP, MSBB, and Mayo

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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3'-UTR located exon skipping events lost miRNA binding sites

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SNVs in the skipped exons with depth of coverage

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AD stage-associated exon skipping events

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Correlation with RNA binding proteins (RBPs)

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Related drugs with this gene

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Related diseases with this gene

Gene summary for FES

check button Gene summary
Gene informationGene symbol

FES

Gene ID

2242

Gene nameFES proto-oncogene, tyrosine kinase
SynonymsFPS
Cytomap

15q26.1

Type of geneprotein-coding
Descriptiontyrosine-protein kinase Fes/FpsOncogene FES, feline sarcoma virusfeline sarcoma (Snyder-Theilen) viral (v-fes)/Fujinami avian sarcoma (PRCII) viral (v-fps) oncogene homologfeline sarcoma oncogenefeline sarcoma/Fujinami avian sarcoma oncogene homologp
Modification date20200313
UniProtAcc

A0A024RC92,

C9J3W6,

E7EMJ7,

E7ENM8,

E9PGC7,

E9PIJ7,

H0YNN8,

H0YNT6,

P07332,

Q4JFK7,

Q4JFK8,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
FES

GO:0018108

peptidyl-tyrosine phosphorylation

11509660|15485904

FES

GO:0046777

protein autophosphorylation

7687763


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Gene structures and expression levels for FES

check buttonSkipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

ENSG00000182511
check button Differentially expressed gene analysis across multiple brain tissues between AD and control.
Tissue typeDEG directionBase mean exp.log2FC(AD/control)P-valueAdj. p-value

check button Differentially expressed isoform analysis across multiple brain tissues between AD and control.
gencode gene structure
Tissue typeDEG directionENSTTranscript info.Base mean exp.log2FC(AD/control)P-valueAdjc. p-value
PGUPENST00000481665.5FES-213:retained_intron:FES1.673507e+001.346836e+005.453462e-049.381716e-03
CBUPENST00000444422.2FES-207:protein_coding:FES2.865469e+002.850524e+002.361925e-031.057405e-02
CBUPENST00000470152.6FES-212:nonsense_mediated_decay:FES5.358151e+001.024985e+006.394889e-032.408522e-02

check button Landscape of isoform expressions across multiple brain tissues between AD and control.
gencode gene structure

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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for FES

check button Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap).
boxplot

check button All exon skipping events in AD cohorts.
Exon skip IDchrExons involved in exon skippingSkipped exon
exon_skip_14683chr1590892707:90892825:90893100:90893194:90893291:9089341490893100:90893194
exon_skip_157746chr1590890407:90890484:90890982:90891191:90891554:9089167690890982:90891191
exon_skip_199981chr1590889306:90889443:90889517:90889636:90889840:9088993990889517:90889636
exon_skip_253103chr1590885046:90885258:90885412:90885585:90886961:9088701590885412:90885585
exon_skip_256444chr1590885046:90885258:90885412:90885585:90886961:9088705790885412:90885585
exon_skip_288964chr1590890401:90890484:90891554:90891676:90892058:9089211190891554:90891676
exon_skip_55919chr1590890401:90890484:90890982:90891191:90891554:9089167690890982:90891191
exon_skip_67878chr1590893654:90893811:90893936:90894058:90895416:9089559890893936:90894058

check button Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control.
Exon skipping informationTissue typeAvg(PSIs) in ADAvg(PSIs) in controlDifference (PSI)Adj. p-value


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Open reading frame (ORF) annotation in the exon skipping event for FES

check button Open reading frame (ORF) of individual exon skipping events in ROSMAP based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003288509089310090893194Frame-shift
ENST000003288509088541290885585In-frame
ENST000003288509088951790889636In-frame
ENST000003288509089098290891191In-frame
ENST000003288509089393690894058In-frame

check button Open reading frame (ORF) of individual exon skipping events in MSBB based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003288509089310090893194Frame-shift
ENST000003288509088541290885585In-frame
ENST000003288509089098290891191In-frame

check button Open reading frame (ORF) of individual exon skipping events in Mayo based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003288509089310090893194Frame-shift
ENST000003288509088541290885585In-frame
ENST000003288509088951790889636In-frame
ENST000003288509089098290891191In-frame

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Infer the effects of exon skipping event on protein functional features for FES

p-ENSG00000182511_img4.png
boxplot

check button Loci of skipped exons in ROSMAP across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003288502846822908854129088558535752971129
ENST00000328850284682290889517908896369501068269308
ENST000003288502846822908909829089119114641672440510
ENST000003288502846822908939369089405823472468735775

check button Loci of skipped exons in MSBB across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003288502846822908854129088558535752971129
ENST000003288502846822908909829089119114641672440510

check button Loci of skipped exons in Mayo across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003288502846822908854129088558535752971129
ENST00000328850284682290889517908896369501068269308
ENST000003288502846822908909829089119114641672440510

check button Lost protein functional features of individual exon skipping events in ROSMAP.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P073327112972129Alternative sequenceID=VSP_041748;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|Ref.3;Dbxref=PMID:14702039
P07332711291822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P0733271129125169Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
P07332711291260DomainNote=F-BAR;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01077
P07332711296896HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P073327112998131HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P0733271129113114MutagenesisNote=Reduced binding to membranes containing phosphoinositides. RK->EE;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19001085;Dbxref=PMID:19001085
P0733271129113114MutagenesisNote=Reduced binding to membranes containing phosphoinositides. RK->QQ;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19001085;Dbxref=PMID:19001085
P07332711298585Natural variantID=VAR_041697;Note=R->C;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56041861,PMID:17344846
P07332711291300RegionNote=Important for interaction with membranes containing phosphoinositides
P073322693081822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P07332269308303344HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P073322693081300RegionNote=Important for interaction with membranes containing phosphoinositides
P07332269308300302TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P07332440510441510Alternative sequenceID=VSP_041749;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|Ref.3;Dbxref=PMID:14702039
P07332440510461464Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1WQU
P07332440510479484Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510491494Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510503506Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510507509Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3BKB
P073324405101822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P07332440510460549DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P07332440510450452HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510455457HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510467473HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510463463MutagenesisNote=Abolishes kinase activity. G->V;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18775312;Dbxref=PMID:18775312
P07332440510483483MutagenesisNote=Abolishes pTyr binding. Abolishes association with microtubules. Abolishes autophosphorylation. Reduced kinase activity. R->M;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:15485904,ECO:0000269|PubMed:18775312;Dbxref=PMID:15485904,
P07332440510486489TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3BKB
P07332735775736738Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P073327357751822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P07332735775561822DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P07332735775739754HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332735775766774HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332735775743743MutagenesisNote=Strongly reduced autophosphorylation and kinase activity. V->M;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:15867340,ECO:0000269|PubMed:16455651;Dbxref=PMID:15867340,PMID:16455651
P07332735775759759MutagenesisNote=Reduced autophosphorylation and strongly reduced kinase activity. S->F;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:15867340,ECO:0000269|PubMed:16455651;Dbxref=PMID:15867340,PMID:16455651
P07332735775755757TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4E93

check button Lost protein functional features of individual exon skipping events in MSBB.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P073327112972129Alternative sequenceID=VSP_041748;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|Ref.3;Dbxref=PMID:14702039
P07332711291822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P0733271129125169Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
P07332711291260DomainNote=F-BAR;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01077
P07332711296896HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P073327112998131HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P0733271129113114MutagenesisNote=Reduced binding to membranes containing phosphoinositides. RK->EE;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19001085;Dbxref=PMID:19001085
P0733271129113114MutagenesisNote=Reduced binding to membranes containing phosphoinositides. RK->QQ;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19001085;Dbxref=PMID:19001085
P07332711298585Natural variantID=VAR_041697;Note=R->C;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56041861,PMID:17344846
P07332711291300RegionNote=Important for interaction with membranes containing phosphoinositides
P07332440510441510Alternative sequenceID=VSP_041749;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|Ref.3;Dbxref=PMID:14702039
P07332440510461464Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1WQU
P07332440510479484Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510491494Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510503506Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510507509Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3BKB
P073324405101822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P07332440510460549DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P07332440510450452HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510455457HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510467473HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510463463MutagenesisNote=Abolishes kinase activity. G->V;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18775312;Dbxref=PMID:18775312
P07332440510483483MutagenesisNote=Abolishes pTyr binding. Abolishes association with microtubules. Abolishes autophosphorylation. Reduced kinase activity. R->M;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:15485904,ECO:0000269|PubMed:18775312;Dbxref=PMID:15485904,
P07332440510486489TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3BKB

check button Lost protein functional features of individual exon skipping events in Mayo.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P073327112972129Alternative sequenceID=VSP_041748;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|Ref.3;Dbxref=PMID:14702039
P07332711291822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P0733271129125169Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
P07332711291260DomainNote=F-BAR;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01077
P07332711296896HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P073327112998131HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P0733271129113114MutagenesisNote=Reduced binding to membranes containing phosphoinositides. RK->EE;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19001085;Dbxref=PMID:19001085
P0733271129113114MutagenesisNote=Reduced binding to membranes containing phosphoinositides. RK->QQ;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19001085;Dbxref=PMID:19001085
P07332711298585Natural variantID=VAR_041697;Note=R->C;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:17344846;Dbxref=dbSNP:rs56041861,PMID:17344846
P07332711291300RegionNote=Important for interaction with membranes containing phosphoinositides
P073322693081822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P07332269308303344HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P073322693081300RegionNote=Important for interaction with membranes containing phosphoinositides
P07332269308300302TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4DYL
P07332440510441510Alternative sequenceID=VSP_041749;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|Ref.3;Dbxref=PMID:14702039
P07332440510461464Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:1WQU
P07332440510479484Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510491494Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510503506Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510507509Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3BKB
P073324405101822ChainID=PRO_0000088088;Note=Tyrosine-protein kinase Fes/Fps
P07332440510460549DomainNote=SH2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00191
P07332440510450452HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510455457HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510467473HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3CBL
P07332440510463463MutagenesisNote=Abolishes kinase activity. G->V;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18775312;Dbxref=PMID:18775312
P07332440510483483MutagenesisNote=Abolishes pTyr binding. Abolishes association with microtubules. Abolishes autophosphorylation. Reduced kinase activity. R->M;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:15485904,ECO:0000269|PubMed:18775312;Dbxref=PMID:15485904,
P07332440510486489TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3BKB


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3'-UTR located exon skipping events that lost miRNA binding sites in FES

check button 3'-UTR exon skipping evnets lost miRNA binding.
Tissue typeENSTExon skip startExon skip endmicroRNABinding site by TargetScanBinding type by TargetScanBdinding site by miRandaScore of miRandaEnergy by miRanda

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SNVs in the skipped exons for FES

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Depth of Coverage in the skipped exon of the mutated samples.

check button - Sashimi plot in the skipped exon of the mutated samples.

check button - Non-synonymous mutations located in the skipped exons.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange

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AD stage-associated exon skippint events for FES

check button Associated exon skipping events with Braak staging or Clinical Dementia Rating (CDR).
AD stage infoCohortTissueSE idCoefficient P-valueChromosomeStrandE1 startE1 endSkipped startSkipped endE2 startE2 end

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for FES

check button sQTL information located at the skipped exons.
Tissue typeExon skip IDSNP idLocationP-valueFDR

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Correlation with RNA binding proteins (RBPs) for FES

check button Correlated RBP and related information.
Tissue typeRBP nameExon skip IDCorrelation coeifficientP-value
TCRBM4Bexon_skip_157746-4.206151e-019.249436e-08
TCHNRNPH2exon_skip_14683-4.480285e-011.268918e-08
TCESRP1exon_skip_14683-4.211463e-011.086058e-07

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RelatedDrugs for FES

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
P07332approved|investigationalDB12010Fostamatinibsmall moleculeP07332

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RelatedDiseases for FES

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource