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| Open reading frame (ORF) annotation in the exon skipping event |
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| 3'-UTR located exon skipping events lost miRNA binding sites |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
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Gene summary for MEF2C-AS1 |
 Gene summary |
| Gene information | Gene symbol | MEF2C-AS1 | Gene ID | 101929423 |
| Gene name | MEF2C antisense RNA 1 | |
| Synonyms | - | |
| Cytomap | 5q14.3 | |
| Type of gene | ncRNA | |
| Description | CTC-454M9.1 | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Gene structures and expression levels for MEF2C-AS1 |
| Skipped exons in the ROSMAP, MSBB, and Mayo based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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ENSG00000248309
| Differentially expressed gene analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | Base mean exp. | log2FC(AD/control) | P-value | Adj. p-value |
| Differentially expressed isoform analysis across multiple brain tissues between AD and control. |
| Tissue type | DEG direction | ENST | Transcript info. | Base mean exp. | log2FC(AD/control) | P-value | Adjc. p-value |
| PG | DOWN | ENST00000513704.5 | MEF2C-AS1-209:lncRNA:MEF2C | 3.281373e+00 | -8.304251e-01 | 3.791526e-03 | 3.769401e-02 |
| Landscape of isoform expressions across multiple brain tissues between AD and control. |
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Exon skipping events with PSIs in ROSMAP, MSBB, and Mayo for MEF2C-AS1 |
| Landscape of individual exon skipping event across AD tissues and controls (PSI heatmap). |
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| All exon skipping events in AD cohorts. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon |
| exon_skip_102840 | chr5 | 88883399:88883485:88903938:88904160:88905209:88905270 | 88903938:88904160 |
| exon_skip_112541 | chr5 | 88905209:88905270:88965841:88965915:89094959:89095029 | 88965841:88965915 |
| exon_skip_120200 | chr5 | 89377283:89377362:89465666:89465775:89465916:89465982 | 89465666:89465775 |
| exon_skip_131108 | chr5 | 88883417:88883485:88905209:88905270:89094959:89095029 | 88905209:88905270 |
| exon_skip_17629 | chr5 | 89150533:89150595:89150724:89150777:89304750:89305171 | 89150724:89150777 |
| exon_skip_176941 | chr5 | 88889460:88889480:88905209:88905270:88965841:88965872 | 88905209:88905270 |
| exon_skip_1789 | chr5 | 88965875:88965915:89094959:89095029:89150533:89150595 | 89094959:89095029 |
| exon_skip_192879 | chr5 | 88943087:88943122:88948136:88948215:88965841:88965872 | 88948136:88948215 |
| exon_skip_198009 | chr5 | 88905209:88905270:88905702:88905773:88940813:88941370 | 88905702:88905773 |
| exon_skip_204582 | chr5 | 89094959:89095029:89150533:89150595:89168250:89168668 | 89150533:89150595 |
| exon_skip_217855 | chr5 | 88905209:88905270:89094959:89095029:89150533:89150595 | 89094959:89095029 |
| exon_skip_241107 | chr5 | 88883417:88883485:88903938:88904160:88905209:88905268 | 88903938:88904160 |
| exon_skip_28379 | chr5 | 88905209:88905270:88943016:88943122:88948136:88948215 | 88943016:88943122 |
| exon_skip_39647 | chr5 | 88883417:88883485:88903938:88904160:88905209:88905270 | 88903938:88904160 |
| exon_skip_45154 | chr5 | 88892257:88892277:88903938:88904160:88905209:88905270 | 88903938:88904160 |
| exon_skip_55532 | chr5 | 88905209:88905270:88943016:88943122:88965841:88965872 | 88943016:88943122 |
| exon_skip_61248 | chr5 | 88965875:88965915:89094959:89095029:89377283:89377362 | 89094959:89095029 |
| exon_skip_68152 | chr5 | 88889454:88889480:88892167:88892277:88905209:88905270 | 88892167:88892277 |
| exon_skip_85251 | chr5 | 88889460:88889480:88892167:88892277:88905209:88905270 | 88892167:88892277 |
| Differentially expressed PSI values of individual exon skipping events in multiple brain tissues between AD and control. |
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