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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: YTHDF1

Summary for YTHDF1

Gene informationGene symbol

YTHDF1

Ensembl ID

ENSG00000149658

Entrez ID

54915

Gene nameYTH N6-methyladenosine RNA binding protein 1
SynonymsC20orf21|FLJ20391
Gene typeprotein_coding
UniProtAcc

Q9BYJ9


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Dataset with differentially expressed gene: YTHDF1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.2766029.01e-42

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells0.3268670.00e+00

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Expression of YTHDF1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to YTHDF1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating YTHDF1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
YTHDF1hsa-miR-4727-5p97.5725NM_017798
YTHDF1hsa-miR-62297.4161NM_017798
YTHDF1hsa-miR-369-3p96.7143NM_017798
YTHDF1hsa-miR-1285-3p96.0237NM_017798
YTHDF1hsa-miR-5189-5p96.0237NM_017798
YTHDF1hsa-miR-6882-5p95.0797NM_017798
YTHDF1hsa-miR-61294.9671NM_017798
YTHDF1hsa-miR-686094.9671NM_017798
YTHDF1hsa-miR-3187-5p94.9671NM_017798
YTHDF1hsa-miR-6847-5p94.8999NM_017798
YTHDF1hsa-miR-376c-3p94.7346NM_017798
YTHDF1hsa-miR-431094.6875NM_017798
YTHDF1hsa-miR-7157-5p94.6514NM_017798
YTHDF1hsa-miR-548aj-3p94.4252NM_017798
YTHDF1hsa-miR-548x-3p94.4252NM_017798
YTHDF1hsa-miR-6817-5p93.7258NM_017798
YTHDF1hsa-miR-4769-3p93.7258NM_017798
YTHDF1hsa-miR-6738-3p93.594NM_017798
YTHDF1hsa-miR-548j-3p92.6053NM_017798
YTHDF1hsa-miR-548am-3p92.6053NM_017798
YTHDF1hsa-miR-548ah-3p92.6053NM_017798
YTHDF1hsa-miR-548ae-3p92.6053NM_017798
YTHDF1hsa-miR-548aq-3p92.6053NM_017798
YTHDF1hsa-miR-3613-3p91.5375NM_017798
YTHDF1hsa-miR-130590.2754NM_017798
YTHDF1hsa-miR-193a-5p89.9049NM_017798
YTHDF1hsa-miR-34689.7863NM_017798
YTHDF1hsa-miR-425788.8573NM_017798
YTHDF1hsa-miR-118287.5652NM_017798
YTHDF1hsa-miR-1213686.804NM_017798
YTHDF1hsa-miR-548z86.2178NM_017798
YTHDF1hsa-miR-548bb-3p86.2178NM_017798
YTHDF1hsa-miR-548h-3p86.2178NM_017798
YTHDF1hsa-miR-548d-3p86.2178NM_017798
YTHDF1hsa-miR-548ac86.2178NM_017798
YTHDF1hsa-miR-92185.68NM_017798
YTHDF1hsa-miR-42185.15NM_017798
YTHDF1hsa-miR-9-3p85.1261NM_017798
YTHDF1hsa-miR-3692-3p84.5625NM_017798
YTHDF1hsa-miR-3606-5p84.4773NM_017798
YTHDF1hsa-miR-374a-5p84.407NM_017798
YTHDF1hsa-miR-548k83.9034NM_017798
YTHDF1hsa-miR-805483.9034NM_017798
YTHDF1hsa-miR-548av-5p83.9034NM_017798
YTHDF1hsa-miR-1255b-5p83.0234NM_017798
YTHDF1hsa-miR-1255a83.0234NM_017798
YTHDF1hsa-miR-548c-3p82.997NM_017798
YTHDF1hsa-miR-374b-5p82.8955NM_017798
YTHDF1hsa-miR-194-5p82.8879NM_017798
YTHDF1hsa-miR-6505-3p82.7233NM_017798
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Motifs and transcription factors (TFs) regulating YTHDF1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
YTHDF1kznf__ZNF25_Imbeault2017_OM_MEMEZNF25 (directAnnotation).
YTHDF1metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
YTHDF1metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
YTHDF1dbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
YTHDF1cisbp__M08198ELF1 (directAnnotation).
YTHDF1hdpi__ETV4ETV4 (directAnnotation).
YTHDF1metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
YTHDF1metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."