DRMref Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

Gene summary

leaf

Datasets with differential expression of this gene

leaf

Expression of this gene in the resistant group across all datasets and cell types

leaf

Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

leaf

Known drug resistance mechanisms of this gene

leaf

MicroRNAs (miRNAs) regulating this gene

leaf

Motifs and transcription factors (TFs) regulating this gene

leaf

Acts as a transcription factor (This gene does not contain this module)

leaf

Acts as a drug target< (This gene does not contain this module)

Gene: VHL

Summary for VHL

Gene informationGene symbol

VHL

Ensembl ID

ENSG00000134086

Entrez ID

7428

Gene namevon Hippel-Lindau tumor suppressor
SynonymsVHL1
Gene typeprotein_coding
UniProtAcc

NA


Top

Dataset with differentially expressed gene: VHL

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4469050.00e+00

Top

Expression of VHL in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

Top

Significant ligand-receptor pairs related to VHL

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

Top

Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

VHL

Unusual Activation of Pro-survival Pathway
Page: 1

Top

MicroRNAs (miRNA) regulating VHL

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
VHLhsa-miR-371b-5p96.7515NM_000551
VHLhsa-miR-616-5p96.7515NM_000551
VHLhsa-miR-373-5p96.7515NM_000551
VHLhsa-miR-3065-3p95.1962NM_000551
VHLhsa-miR-7151-3p92.5397NM_000551
VHLhsa-miR-3613-3p89.8752NM_000551
VHLhsa-miR-513b-5p89.2831NM_000551
VHLhsa-miR-4755-3p88.4761NM_000551
VHLhsa-miR-383-3p85.2322NM_000551
VHLhsa-miR-504-3p85.1026NM_000551
VHLhsa-miR-767-5p85.0961NM_000551
VHLhsa-miR-340-5p83.9209NM_000551
VHLhsa-miR-155-3p83.0649NM_000551
VHLhsa-miR-442982.9484NM_000551
VHLhsa-miR-320c82.9484NM_000551
VHLhsa-miR-320a-3p82.9484NM_000551
VHLhsa-miR-320b82.9484NM_000551
VHLhsa-miR-320d82.9484NM_000551
VHLhsa-miR-548ar-3p82.3532NM_000551
VHLhsa-miR-364682.3281NM_000551
VHLhsa-miR-4639-3p81.8454NM_000551
VHLhsa-miR-4482-3p81.6481NM_000551
VHLhsa-miR-7162-5p80.8627NM_000551
VHLhsa-miR-516b-3p80.8627NM_000551
VHLhsa-miR-516a-3p80.8627NM_000551
Page: 1

Top

Motifs and transcription factors (TFs) regulating VHL

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
VHLmetacluster_135.11NR2C2 (directAnnotation).
VHLmetacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
VHLmetacluster_144.3ZNF704; ZNF704 (directAnnotation).
VHLjaspar__MA0185.1DEAF1 (inferredBy_Orthology).
VHLmetacluster_61.1DEAF1; DEAF1 (directAnnotation).
VHLkznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
Page: 1

Top

Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

Top

Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."