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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: VDAC2

Summary for VDAC2

Gene informationGene symbol

VDAC2

Ensembl ID

ENSG00000165637

Entrez ID

7417

Gene namevoltage dependent anion channel 2
SynonymsNA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: VDAC2

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells-0.4825254.08e-09

GSE131984_Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)ChemotherapypaclitaxelNAMalignant cells0.2655876.96e-17

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.3553041.30e-13

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.5655720.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.3284181.35e-39

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.3735697.85e-44

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.4061821.42e-33

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.5071750.00e+00

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.3133495.82e-21

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.4098520.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.2928291.63e-24

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.9693510.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.7767850.00e+00

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Expression of VDAC2 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to VDAC2

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating VDAC2

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
VDAC2hsa-miR-212-3p95.8054NM_001324090
VDAC2hsa-miR-132-3p95.8054NM_001324090
VDAC2hsa-miR-664a-3p94.7489NM_001184823
VDAC2hsa-miR-6758-3p94.6501NM_001324090
VDAC2hsa-miR-138-2-3p94.0975NM_001184823
VDAC2hsa-miR-1212393.6791NM_001184823
VDAC2hsa-miR-6891-3p93.0616NM_001184823
VDAC2hsa-miR-607293.0616NM_001184823
VDAC2hsa-miR-568892.4334NM_001184823
VDAC2hsa-miR-4753-5p91.5786NM_001184823
VDAC2hsa-miR-1212091.025NM_001324090
VDAC2hsa-miR-495-3p90.3343NM_001184823
VDAC2hsa-miR-613186.7806NM_001324090
VDAC2hsa-miR-118486.1619NM_001324090
VDAC2hsa-miR-806485.8231NM_001184823
VDAC2hsa-miR-5196-3p85.2379NM_001184823
VDAC2hsa-miR-708-3p85.1047NM_001324090
VDAC2hsa-miR-4799-5p85.0793NM_001324090
VDAC2hsa-miR-127583.1431NM_001324090
VDAC2hsa-miR-59682.688NM_001184823
VDAC2hsa-miR-509381.9734NM_001324090
VDAC2hsa-miR-6893-3p81.466NM_001184823
VDAC2hsa-miR-3688-3p80.2683NM_001324090
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Motifs and transcription factors (TFs) regulating VDAC2

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
VDAC2metacluster_151.2ZNF23 (directAnnotation).
VDAC2kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
VDAC2jaspar__MA0079.5SP1 (directAnnotation).
VDAC2transfac_pro__M06213ZNF267 (directAnnotation).
VDAC2taipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_2ELK1; GCM1 (directAnnotation).
VDAC2transfac_pro__M01199TRIM28 (directAnnotation).
VDAC2hdpi__TIMELESSTIMELESS (directAnnotation).
VDAC2dbtfbs__ZSCAN30_HEK293_ENCSR768VNZ_merged_N1ZSCAN30 (directAnnotation).
VDAC2kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
VDAC2transfac_pro__M04826EP300 (directAnnotation).
VDAC2transfac_pro__M05544BCL11A (directAnnotation).
VDAC2kznf__ZNF441_Imbeault2017_OM_RCADEZNF441 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
VDAC2"Aluminium monostearate"

DB01375

small molecule
VDAC2"PRLX 93936"

DB06098

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."