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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: VAMP3

Summary for VAMP3

Gene informationGene symbol

VAMP3

Ensembl ID

ENSG00000049245

Entrez ID

9341

Gene namevesicle associated membrane protein 3
SynonymsCEB
Gene typeprotein_coding
UniProtAcc

Q15836


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Dataset with differentially expressed gene: VAMP3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.4441155.54e-04

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.3172660.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2887620.00e+00

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Expression of VAMP3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to VAMP3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating VAMP3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
VAMP3hsa-miR-182-5p99.033NM_004781
VAMP3hsa-miR-124-3p98.8156NM_004781
VAMP3hsa-miR-506-3p98.8156NM_004781
VAMP3hsa-miR-96-5p98.2136NM_004781
VAMP3hsa-miR-504-3p97.5554NM_004781
VAMP3hsa-miR-1271-5p97.4262NM_004781
VAMP3hsa-miR-1213397.4262NM_004781
VAMP3hsa-miR-1468-3p96.9629NM_004781
VAMP3hsa-miR-100-3p94.2358NM_004781
VAMP3hsa-miR-548an93.6183NM_004781
VAMP3hsa-miR-320293.445NM_004781
VAMP3hsa-miR-453393.445NM_004781
VAMP3hsa-miR-797793.1907NM_004781
VAMP3hsa-miR-6515-3p92.8269NM_004781
VAMP3hsa-miR-6511b-5p92.449NM_004781
VAMP3hsa-miR-6811-5p92.449NM_004781
VAMP3hsa-miR-4640-5p92.4289NM_004781
VAMP3hsa-miR-5197-5p92.2467NM_004781
VAMP3hsa-miR-2115-3p91.6883NM_004781
VAMP3hsa-miR-392091.5967NM_004781
VAMP3hsa-miR-520f-3p91.5776NM_004781
VAMP3hsa-miR-38491.5097NM_004781
VAMP3hsa-miR-4726-5p91.2777NM_004781
VAMP3hsa-miR-676-5p91.1406NM_004781
VAMP3hsa-miR-103b89.7997NM_004781
VAMP3hsa-miR-391089.2816NM_004781
VAMP3hsa-miR-196a-1-3p88.5655NM_004781
VAMP3hsa-miR-34b-5p88.5499NM_004781
VAMP3hsa-miR-449c-5p88.5499NM_004781
VAMP3hsa-miR-605-3p87.5641NM_004781
VAMP3hsa-miR-122-5p87.4872NM_004781
VAMP3hsa-miR-1226-3p87.2864NM_004781
VAMP3hsa-miR-19b-3p86.3789NM_004781
VAMP3hsa-miR-19a-3p86.3789NM_004781
VAMP3hsa-miR-142-3p86.3696NM_004781
VAMP3hsa-miR-9-5p84.8749NM_004781
VAMP3hsa-miR-463584.8018NM_004781
VAMP3hsa-miR-2682-5p84.5439NM_004781
VAMP3hsa-miR-4690-3p83.8518NM_004781
VAMP3hsa-miR-568583.8518NM_004781
VAMP3hsa-miR-449683.2371NM_004781
VAMP3hsa-miR-152-5p82.6034NM_004781
VAMP3hsa-miR-199a-3p81.5337NM_004781
VAMP3hsa-miR-199b-3p81.5337NM_004781
VAMP3hsa-miR-3129-5p81.4876NM_004781
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Motifs and transcription factors (TFs) regulating VAMP3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
VAMP3metacluster_7.13ZFX (directAnnotation).
VAMP3taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
VAMP3metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
VAMP3transfac_pro__M05479ZNF580 (directAnnotation).
VAMP3metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
VAMP3kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
VAMP3hocomoco__KLF13_HUMAN.H11MO.0.DKLF13 (directAnnotation).
VAMP3homer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
VAMP3jaspar__MA0079.5SP1 (directAnnotation).
VAMP3metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
VAMP3metacluster_144.8ZNF30; ZNF30 (directAnnotation).
VAMP3dbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
VAMP3transfac_pro__M01199TRIM28 (directAnnotation).
VAMP3dbtfbs__ZSCAN30_HEK293_ENCSR768VNZ_merged_N1ZSCAN30 (directAnnotation).
VAMP3jaspar__MA0748.2YY2 (directAnnotation).
VAMP3transfac_pro__M12697ZNF142 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."