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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: URM1

Summary for URM1

Gene informationGene symbol

URM1

Ensembl ID

ENSG00000167118

Entrez ID

81605

Gene nameubiquitin related modifier 1
SynonymsC9orf74|MGC2668
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: URM1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells-0.4010310.00e+00

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.5596560.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.2761270.00e+00

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.3278551.08e-09

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells0.2955910.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.7494570.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.7660750.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.6173190.00e+00

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Expression of URM1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to URM1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating URM1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
URM1hsa-miR-5008-5p98.4205NM_001265582
URM1hsa-miR-3692-5p97.1459NM_001265582
URM1hsa-miR-670-3p96.4844NM_001265582
URM1hsa-miR-444794.4744NM_001265582
URM1hsa-miR-76594.2474NM_001265582
URM1hsa-miR-11181-3p93.0233NM_001265582
URM1hsa-miR-185-3p92.8908NM_001265582
URM1hsa-miR-6510-5p92.6087NM_030914
URM1hsa-miR-4722-5p91.9519NM_001265582
URM1hsa-miR-990290.9329NM_001135947
URM1hsa-miR-6825-5p88.8506NM_001265582
URM1hsa-miR-448788.7902NM_001265582
URM1hsa-miR-445688.4466NM_001265582
URM1hsa-miR-4731-5p88.2408NM_030914
URM1hsa-miR-430688.217NM_001265582
URM1hsa-miR-4781-5p87.4311NM_030914
URM1hsa-miR-4649-3p87.2836NM_001265582
URM1hsa-miR-317686.8354NM_001265582
URM1hsa-miR-3922-3p86.8354NM_001265582
URM1hsa-miR-619-5p86.3418NM_001265582
URM1hsa-miR-6506-5p86.3418NM_001265582
URM1hsa-miR-30c-2-3p85.9871NM_001135947
URM1hsa-miR-447285.7961NM_001265582
URM1hsa-miR-7109-5p85.6395NM_030914
URM1hsa-miR-315485.1615NM_001135947
URM1hsa-miR-6765-3p83.834NM_001265582
URM1hsa-miR-425483.1063NM_001265582
URM1hsa-miR-3162-5p81.9489NM_001265582
URM1hsa-miR-6870-5p81.3228NM_001265582
URM1hsa-miR-6795-5p80.9805NM_030914
URM1hsa-miR-6887-5p80.9805NM_030914
URM1hsa-miR-6767-3p80.4128NM_030914
URM1hsa-miR-10523-5p80.3615NM_001265582
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Motifs and transcription factors (TFs) regulating URM1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
URM1metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
URM1taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
URM1metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
URM1taipale_tf_pairs__MEIS1_ELF1_NTGCCGGAAGTN_CAP_reprELF1; MEIS1 (directAnnotation).
URM1metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
URM1swissregulon__hs__ELF2ELF2 (directAnnotation).
URM1taipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
URM1hdpi__ETV4ETV4 (directAnnotation).
URM1taipale_tf_pairs__ETV5_FOXI1_RSCGGATGTTGN_CAPETV5; FOXI1 (directAnnotation).
URM1cisbp__M02645ETS1 (directAnnotation).
URM1taipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
URM1taipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
URM1metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
URM1taipale_tf_pairs__ELK1_HOXA3_RSCGGTAATKR_CAP_reprELK1; HOXA3 (directAnnotation).
URM1taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
URM1taipale_tf_pairs__ELK1_EOMES_TNRCACCGGAAGN_CAPELK1; EOMES (directAnnotation).
URM1taipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
URM1taipale_tf_pairs__ELK1_FOXI1_RSCGGATGTKKN_CAPELK1; FOXI1 (directAnnotation).
URM1hdpi__FLI1FLI1 (directAnnotation).
URM1metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
URM1dbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
URM1taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
URM1transfac_pro__M04826EP300 (directAnnotation).
URM1jaspar__MA1933.1SREBF2 (directAnnotation).
URM1jaspar__MA1708.1ETV7 (directAnnotation).
URM1taipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
URM1taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
URM1taipale_tf_pairs__FOXO1_ELK1_RSCGGATGTTRTN_CAPELK1; FOXO1 (directAnnotation).
URM1taipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
URM1taipale_tf_pairs__ETV2_FOXI1_RSCGGATGTTKW_CAPETV2; FOXI1 (directAnnotation).
URM1taipale_tf_pairs__HOXB2_ETV1_ACCGGAAATGA_CAPETV1; HOXB2 (directAnnotation).
URM1taipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
URM1taipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
URM1taipale_tf_pairs__ERF_FOXI1_TGTTKMCGGAWRN_CAP_reprERF; FOXI1 (directAnnotation).
URM1hdpi__ELF2ELF2 (directAnnotation).
URM1taipale_tf_pairs__FLI1_FOXI1_RCCGGATGTTKWY_CAPFLI1; FOXI1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."