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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: UBP1

Summary for UBP1

Gene informationGene symbol

UBP1

Ensembl ID

ENSG00000153560

Entrez ID

7342

Gene nameupstream binding protein 1
SynonymsLBP-1a
Gene typeprotein_coding
UniProtAcc

Q9NZI7


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Dataset with differentially expressed gene: UBP1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4437150.00e+00

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Expression of UBP1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to UBP1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating UBP1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
UBP1hsa-miR-426296.7937NM_001128160
UBP1hsa-miR-3085-5p96.6398NM_001128160
UBP1hsa-miR-5002-5p95.5289NM_001128161
UBP1hsa-miR-130595.1062NM_001128160
UBP1hsa-miR-181d-5p94.8941NM_001128160
UBP1hsa-miR-181b-5p94.8941NM_001128160
UBP1hsa-miR-181a-5p94.8941NM_001128160
UBP1hsa-miR-181c-5p94.8941NM_001128160
UBP1hsa-miR-449a94.4911NM_001128160
UBP1hsa-miR-34a-5p94.4911NM_001128160
UBP1hsa-miR-494-3p93.8852NM_001128160
UBP1hsa-miR-58193.528NM_001128161
UBP1hsa-miR-34c-5p92.8849NM_001128160
UBP1hsa-miR-449b-5p92.8849NM_001128160
UBP1hsa-miR-365a-3p92.8796NM_001128160
UBP1hsa-miR-365b-3p92.8796NM_001128160
UBP1hsa-miR-548p92.8763NM_001128161
UBP1hsa-miR-431091.0216NM_001128160
UBP1hsa-miR-472989.6139NM_001128160
UBP1hsa-miR-570-3p89.5806NM_001128160
UBP1hsa-miR-3605-5p89.1852NM_001128160
UBP1hsa-miR-7157-5p87.5771NM_001128160
UBP1hsa-miR-10527-5p87.5375NM_001128161
UBP1hsa-miR-548au-3p87.5144NM_001128160
UBP1hsa-miR-519087.0905NM_001128160
UBP1hsa-miR-122b-5p86.9889NM_001128160
UBP1hsa-miR-211-5p85.9591NM_001128160
UBP1hsa-miR-204-5p85.9591NM_001128160
UBP1hsa-miR-138-5p85.6615NM_001128160
UBP1hsa-miR-193a-3p84.2606NM_001128160
UBP1hsa-miR-193b-3p84.2606NM_001128160
UBP1hsa-miR-4694-3p83.8886NM_001128161
UBP1hsa-miR-10524-5p83.2737NM_001128160
UBP1hsa-miR-60782.7687NM_001128161
UBP1hsa-miR-5000-5p81.9952NM_001128160
UBP1hsa-miR-4742-5p81.0025NM_001128161
UBP1hsa-miR-3192-5p80.5496NM_001128161
UBP1hsa-miR-4668-3p80.4454NM_001128160
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Motifs and transcription factors (TFs) regulating UBP1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
UBP1metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
UBP1cisbp__M00341PAX6 (directAnnotation).
UBP1metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
UBP1cisbp__M00788ZFY (inferredBy_Orthology).
UBP1metacluster_175.1ZNF283 (directAnnotation).
UBP1kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."