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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: UBE4A

Summary for UBE4A

Gene informationGene symbol

UBE4A

Ensembl ID

ENSG00000110344

Entrez ID

9354

Gene nameubiquitination factor E4A
SynonymsE4|KIAA0126|UBOX2|UFD2
Gene typeprotein_coding
UniProtAcc

Q14139


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Dataset with differentially expressed gene: UBE4A

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.5513750.00e+00

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Expression of UBE4A in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to UBE4A

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating UBE4A

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
UBE4Ahsa-miR-4735-5p98.5445NM_001204077
UBE4Ahsa-miR-569698.1887NM_001204077
UBE4Ahsa-miR-3913-3p97.952NM_001204077
UBE4Ahsa-miR-1213697.5844NM_001204077
UBE4Ahsa-miR-429196.7101NM_001204077
UBE4Ahsa-miR-607796.4166NM_001204077
UBE4Ahsa-miR-7152-5p95.6147NM_001204077
UBE4Ahsa-miR-670-3p94.7152NM_001204077
UBE4Ahsa-miR-15b-5p94.5076NM_001204077
UBE4Ahsa-miR-15a-5p94.5076NM_001204077
UBE4Ahsa-miR-124-3p94.4997NM_001204077
UBE4Ahsa-miR-506-3p94.4997NM_001204077
UBE4Ahsa-miR-472993.4834NM_004788
UBE4Ahsa-miR-6838-5p92.9394NM_001204077
UBE4Ahsa-miR-16-5p92.9394NM_001204077
UBE4Ahsa-miR-195-5p92.9394NM_001204077
UBE4Ahsa-miR-489-3p92.8002NM_001204077
UBE4Ahsa-miR-153-5p92.5524NM_001204077
UBE4Ahsa-miR-1250-3p92.4753NM_001204077
UBE4Ahsa-miR-497-5p91.5191NM_001204077
UBE4Ahsa-miR-424-5p91.5191NM_001204077
UBE4Ahsa-miR-6853-3p90.7459NM_001204077
UBE4Ahsa-miR-361189.3867NM_001204077
UBE4Ahsa-miR-20689.364NM_001204077
UBE4Ahsa-miR-1-3p89.364NM_001204077
UBE4Ahsa-miR-612489.3395NM_001204077
UBE4Ahsa-miR-367189.0713NM_001204077
UBE4Ahsa-miR-103a-3p88.9689NM_001204077
UBE4Ahsa-miR-10788.9689NM_001204077
UBE4Ahsa-miR-61387.2177NM_001204077
UBE4Ahsa-miR-6511b-3p86.9873NM_001204077
UBE4Ahsa-miR-6511a-3p86.9873NM_001204077
UBE4Ahsa-miR-3619-5p86.6091NM_001204077
UBE4Ahsa-miR-450185.814NM_001204077
UBE4Ahsa-miR-3074-5p85.5284NM_001204077
UBE4Ahsa-miR-335-3p85.507NM_001204077
UBE4Ahsa-miR-366284.931NM_001204077
UBE4Ahsa-miR-29b-2-5p84.9091NM_001204077
UBE4Ahsa-miR-3059-5p84.4659NM_001204077
UBE4Ahsa-miR-142-5p84.4192NM_001204077
UBE4Ahsa-miR-5590-3p84.4192NM_001204077
UBE4Ahsa-miR-6768-5p83.685NM_001204077
UBE4Ahsa-miR-6819-3p83.3916NM_001204077
UBE4Ahsa-miR-6804-5p83.2417NM_001204077
UBE4Ahsa-miR-508-5p82.8919NM_001204077
UBE4Ahsa-miR-939-5p82.4252NM_001204077
UBE4Ahsa-miR-1343-5p82.4252NM_001204077
UBE4Ahsa-miR-468682.1854NM_001204077
UBE4Ahsa-miR-520f-5p82.0744NM_001204077
UBE4Ahsa-miR-6877-3p81.9929NM_001204077
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Motifs and transcription factors (TFs) regulating UBE4A

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
UBE4Ametacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
UBE4Ametacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
UBE4Ataipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
UBE4Ametacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
UBE4Ataipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
UBE4Ataipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
UBE4Ajaspar__MA1483.2ELF2 (directAnnotation).
UBE4Aswissregulon__hs__ETV6ETV6 (directAnnotation).
UBE4Ametacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
UBE4Ataipale_tf_pairs__MEIS1_ELF1_NTGCCGGAAGTN_CAP_reprELF1; MEIS1 (directAnnotation).
UBE4Ametacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
UBE4Atransfac_pro__M04826EP300 (directAnnotation).
UBE4Acisbp__M02645ETS1 (directAnnotation).
UBE4Ataipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
UBE4Ataipale_tf_pairs__ELK1_HOXA1_RCCGGAAGTAATTA_HTELK1; HOXA1 (directAnnotation).
UBE4Ataipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
UBE4Ahdpi__ETV4ETV4 (directAnnotation).
UBE4Ataipale_tf_pairs__ETV5_FOXI1_RSCGGATGTTGN_CAPETV5; FOXI1 (directAnnotation).
UBE4Aswissregulon__hs__ELF2ELF2 (directAnnotation).
UBE4Ataipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
UBE4Ataipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
UBE4Ajaspar__MA1708.1ETV7 (directAnnotation).
UBE4Ataipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
UBE4Ahdpi__FLI1FLI1 (directAnnotation).
UBE4Ajaspar__MA1933.1SREBF2 (directAnnotation).
UBE4Ataipale_tf_pairs__ELK1_EOMES_TNRCACCGGAAGN_CAPELK1; EOMES (directAnnotation).
UBE4Ataipale_tf_pairs__FOXO1_ETV1_RCCGGAWGTKKN_CAPETV1; FOXO1 (directAnnotation).
UBE4Ataipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
UBE4Ataipale_tf_pairs__ELK1_FOXI1_RSCGGATGTKKN_CAPELK1; FOXI1 (directAnnotation).
UBE4Ataipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."