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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: TVP23B

Summary for TVP23B

Gene informationGene symbol

TVP23B

Ensembl ID

ENSG00000171928

Entrez ID

51030

Gene nametrans-golgi network vesicle protein 23 homolog B
SynonymsCGI-148|FAM18B|FAM18B1|YDR084C
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: TVP23B

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.7745915.62e-06

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.3249231.69e-38

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Expression of TVP23B in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to TVP23B

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating TVP23B

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
TVP23Bhsa-miR-548x-3p99.501NM_001316921
TVP23Bhsa-miR-548aj-3p99.501NM_001316921
TVP23Bhsa-miR-548ae-3p99.1502NM_001316921
TVP23Bhsa-miR-548aq-3p99.1502NM_001316921
TVP23Bhsa-miR-548am-3p98.8295NM_001316921
TVP23Bhsa-miR-548ah-3p98.8295NM_001316921
TVP23Bhsa-miR-548j-3p98.8295NM_001316921
TVP23Bhsa-let-7f-1-3p98.0927NM_001316919
TVP23Bhsa-let-7b-3p98.0927NM_001316919
TVP23Bhsa-miR-98-3p98.0927NM_001316919
TVP23Bhsa-let-7a-3p98.0927NM_001316919
TVP23Bhsa-miR-142-5p96.6371NM_001316921
TVP23Bhsa-miR-5590-3p96.6371NM_001316921
TVP23Bhsa-miR-6796-3p93.487NM_001316919
TVP23Bhsa-miR-448093.4217NM_001316921
TVP23Bhsa-miR-561-3p93.0732NM_001316921
TVP23Bhsa-miR-5582-3p91.8688NM_001316921
TVP23Bhsa-miR-4436b-5p91.7744NM_001316921
TVP23Bhsa-miR-4524a-3p91.2992NM_001316921
TVP23Bhsa-miR-451b90.6431NM_001316921
TVP23Bhsa-let-7f-2-3p89.984NM_001316919
TVP23Bhsa-miR-4789-5p89.984NM_001316919
TVP23Bhsa-miR-1185-1-3p89.984NM_001316919
TVP23Bhsa-miR-1185-2-3p89.984NM_001316919
TVP23Bhsa-miR-449589.2283NM_001316921
TVP23Bhsa-miR-446088.3214NM_001316921
TVP23Bhsa-miR-3692-5p86.9672NM_001316921
TVP23Bhsa-miR-367485.7601NM_001316921
TVP23Bhsa-miR-3121-3p85.5731NM_001316921
TVP23Bhsa-miR-374c-5p85.4588NM_001316921
TVP23Bhsa-miR-655-3p85.4588NM_001316921
TVP23Bhsa-miR-7159-5p85.4219NM_001316921
TVP23Bhsa-miR-6512-5p84.5578NM_001316921
TVP23Bhsa-miR-676-5p83.4774NM_001316921
TVP23Bhsa-miR-590-3p83.172NM_001316921
TVP23Bhsa-miR-368683.0187NM_001316921
TVP23Bhsa-miR-338-5p81.1893NM_001316919
TVP23Bhsa-miR-93-3p80.8416NM_001316921
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Motifs and transcription factors (TFs) regulating TVP23B

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
TVP23Bmetacluster_151.2ZNF23 (directAnnotation).
Page: 1

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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."