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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: TMX4

Summary for TMX4

Gene informationGene symbol

TMX4

Ensembl ID

ENSG00000125827

Entrez ID

56255

Gene namethioredoxin related transmembrane protein 4
SynonymsDJ971N18.2|KIAA1162|PDIA14|TXNDC13
Gene typeprotein_coding
UniProtAcc

Q9H1E5


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Dataset with differentially expressed gene: TMX4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.4337390.00e+00

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postNeutrophils-0.3723297.12e-22

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.5119330.00e+00

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Expression of TMX4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to TMX4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating TMX4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
TMX4hsa-miR-7-2-3p98.3981NM_021156
TMX4hsa-miR-7-1-3p98.3981NM_021156
TMX4hsa-miR-311997.1812NM_021156
TMX4hsa-miR-568896.3492NM_021156
TMX4hsa-miR-190a-3p96.3327NM_021156
TMX4hsa-miR-314896.2464NM_021156
TMX4hsa-miR-495-3p94.6898NM_021156
TMX4hsa-miR-4795-3p94.4856NM_021156
TMX4hsa-miR-200c-3p94.4202NM_021156
TMX4hsa-miR-42994.4202NM_021156
TMX4hsa-miR-200b-3p94.4202NM_021156
TMX4hsa-miR-548c-3p94.1226NM_021156
TMX4hsa-miR-579-3p94.0052NM_021156
TMX4hsa-miR-664b-3p94.0052NM_021156
TMX4hsa-miR-4666a-3p93.6325NM_021156
TMX4hsa-miR-6839-5p93.5012NM_021156
TMX4hsa-miR-3529-3p93.3758NM_021156
TMX4hsa-miR-378j92.4726NM_021156
TMX4hsa-miR-7856-5p91.707NM_021156
TMX4hsa-miR-95-5p90.8256NM_021156
TMX4hsa-miR-651-3p90.7624NM_021156
TMX4hsa-miR-548m90.6716NM_021156
TMX4hsa-miR-302c-5p90.5886NM_021156
TMX4hsa-miR-365090.5134NM_021156
TMX4hsa-miR-5011-5p90.4105NM_021156
TMX4hsa-miR-570-3p89.9196NM_021156
TMX4hsa-miR-524-5p89.3236NM_021156
TMX4hsa-miR-520d-5p89.3236NM_021156
TMX4hsa-miR-397889.0537NM_021156
TMX4hsa-miR-551b-5p88.9268NM_021156
TMX4hsa-miR-366288.6729NM_021156
TMX4hsa-miR-590-3p88.4113NM_021156
TMX4hsa-miR-425188.2562NM_021156
TMX4hsa-miR-6758-3p88.2279NM_021156
TMX4hsa-miR-477587.1789NM_021156
TMX4hsa-miR-196a-1-3p87.1398NM_021156
TMX4hsa-miR-6835-3p85.6381NM_021156
TMX4hsa-miR-428285.5735NM_021156
TMX4hsa-miR-6719-3p84.8493NM_021156
TMX4hsa-miR-569684.3646NM_021156
TMX4hsa-miR-4786-5p84.2155NM_021156
TMX4hsa-miR-520f-5p83.7102NM_021156
TMX4hsa-miR-806383.5393NM_021156
TMX4hsa-miR-397783.1037NM_021156
TMX4hsa-miR-450a-2-3p82.7719NM_021156
TMX4hsa-miR-6882-3p82.3293NM_021156
TMX4hsa-miR-426182.3236NM_021156
TMX4hsa-miR-6771-3p82.1393NM_021156
TMX4hsa-miR-480182.0718NM_021156
TMX4hsa-miR-338-5p81.6737NM_021156
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Motifs and transcription factors (TFs) regulating TMX4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
TMX4taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
TMX4metacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
TMX4metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
TMX4metacluster_7.13ZFX (directAnnotation).
TMX4taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
TMX4metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
TMX4metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
TMX4swissregulon__hs__CHD1CHD1 (directAnnotation).
TMX4transfac_pro__M02090E2F4 (directAnnotation).
TMX4transfac_pro__M01714KLF15 (directAnnotation).
TMX4metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
TMX4hocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
TMX4transfac_pro__M02089E2F3 (directAnnotation).
TMX4metacluster_3.14WT1; WT1 (directAnnotation).
TMX4metacluster_126.3LIN28B; LIN28B (directAnnotation).
TMX4hocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
TMX4metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
TMX4cisbp__M07938E2F1 (directAnnotation).
TMX4homer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
TMX4taipale_tf_pairs__GCM1_ELF1_GTGCGGGCGGAAGTN_CAP_reprELF1; GCM1 (directAnnotation).
TMX4kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
TMX4transfac_pro__M02898SMAD3 (directAnnotation).
TMX4transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
TMX4hdpi__HIP2UBE2K (directAnnotation).
TMX4hdpi__NRLNRL (directAnnotation).
TMX4transfac_pro__M00430E2F1 (directAnnotation).
TMX4homer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
TMX4metacluster_197.3E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F5; E2F5; E2F5; E2F5; E2F6; E2F7; E2F7; E2F7; RB1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP2; TFDP2 (directAnnotation).
TMX4transfac_pro__M01090SMAD9 (inferredBy_Orthology).
TMX4transfac_pro__M01837KLF11 (directAnnotation).
TMX4hdpi__TP73TP73 (directAnnotation).
TMX4transfac_pro__M02844BCL6B (inferredBy_Orthology).
TMX4transfac_pro__M07310SP5 (directAnnotation).
TMX4metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
TMX4transfac_pro__M04817ZBTB33 (directAnnotation).
TMX4jaspar__MA0748.2YY2 (directAnnotation).
TMX4kznf__ZNF777_Imbeault2017_RP_ChIP-seqZNF777 (directAnnotation).
TMX4transfac_pro__M00716ZBTB14 (directAnnotation).
TMX4metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
TMX4jaspar__MA1122.1TFDP1 (directAnnotation).
TMX4cisbp__M00968MTF2 (directAnnotation).
TMX4metacluster_163.2ZNF682 (directAnnotation).
TMX4metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
TMX4transfac_pro__M04916TAF1 (directAnnotation).
TMX4transfac_pro__M00938E2F1 (directAnnotation).
TMX4kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
TMX4metacluster_90.3ESRRA; ESRRA; ESRRB; NR5A1 (directAnnotation). ESRRA; NR5A1; NR5A1; NR5A2; NR5A2 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."