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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: TMEM230

Summary for TMEM230

Gene informationGene symbol

TMEM230

Ensembl ID

ENSG00000089063

Entrez ID

29058

Gene nametransmembrane protein 230
SynonymsC20orf30|HSPC274
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: TMEM230

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.182814.29e-25

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.3050554.13e-17

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.3268740.00e+00

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells-0.5243650.00e+00

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.3793560.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD4+ T cells0.3519180.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells0.3653590.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.3213310.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.2781062.58e-12

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells0.5370360.00e+00

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepostMalignant cells-0.4012090.00e+00

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreMalignant cells-0.3853850.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.9185740.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.3905630.00e+00

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Expression of TMEM230 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to TMEM230

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating TMEM230

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
TMEM230hsa-miR-3190-5p93.2339NM_001009923
TMEM230hsa-miR-314892.7549NM_001009923
TMEM230hsa-miR-10394-5p92.3132NM_001009924
TMEM230hsa-miR-120592.3132NM_001009924
TMEM230hsa-miR-6505-5p91.3617NM_001009924
TMEM230hsa-miR-5187-5p89.3905NM_001009924
TMEM230hsa-miR-676-3p87.5287NM_001009924
TMEM230hsa-miR-6504-3p85.4464NM_001009924
TMEM230hsa-miR-71185.4172NM_001009924
TMEM230hsa-miR-10399-5p85.2724NM_001009924
TMEM230hsa-miR-6850-3p84.9683NM_001009924
TMEM230hsa-miR-3922-3p84.8882NM_001009923
TMEM230hsa-miR-3187-3p84.8332NM_001009923
TMEM230hsa-miR-446883.6571NM_001009924
TMEM230hsa-miR-61883.2441NM_001009924
TMEM230hsa-miR-6838-3p82.759NM_001009924
TMEM230hsa-miR-433080.8051NM_001009924
TMEM230hsa-miR-3145-3p80.1624NM_001009924
TMEM230hsa-miR-477580.0472NM_001009923
TMEM230hsa-miR-317680.0335NM_001009923
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Motifs and transcription factors (TFs) regulating TMEM230

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
TMEM230jaspar__MA1933.1SREBF2 (directAnnotation).
TMEM230metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
TMEM230taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
TMEM230metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
TMEM230taipale_tf_pairs__MEIS1_ELF1_NTGCCGGAAGTN_CAP_reprELF1; MEIS1 (directAnnotation).
TMEM230metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
TMEM230swissregulon__hs__ELF2ELF2 (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
TMEM230taipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
TMEM230hdpi__ETV4ETV4 (directAnnotation).
TMEM230taipale_tf_pairs__ETV5_FOXI1_RSCGGATGTTGN_CAPETV5; FOXI1 (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_TEF_NSCGGAWNTTACGTAAN_CAPELK1; TEF (directAnnotation).
TMEM230cisbp__M02645ETS1 (directAnnotation).
TMEM230taipale_tf_pairs__ETV2_HOXA2_NCCGGAAGTMATTA_CAP_reprETV2; HOXA2 (directAnnotation).
TMEM230taipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
TMEM230taipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
TMEM230metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
TMEM230taipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
TMEM230taipale_tf_pairs__ETV2_TCF3_CASSTGNNCCGGAWRYN_CAP_reprETV2; TCF3 (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_HOXA3_RSCGGTAATKR_CAP_reprELK1; HOXA3 (directAnnotation).
TMEM230jaspar__MA1483.2ELF2 (directAnnotation).
TMEM230taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
TMEM230taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_EOMES_TNRCACCGGAAGN_CAPELK1; EOMES (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_HOXA1_RCCGGAAGTAATTA_HTELK1; HOXA1 (directAnnotation).
TMEM230taipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_FOXI1_RSCGGATGTKKN_CAPELK1; FOXI1 (directAnnotation).
TMEM230metacluster_19.7GMEB1; GMEB2 (inferredBy_Orthology).
TMEM230hdpi__FLI1FLI1 (directAnnotation).
TMEM230metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
TMEM230jaspar__MA1957.1ELK1 (directAnnotation).
TMEM230taipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
TMEM230taipale_tf_pairs__FOXO1_ELK1_RSCGGATGTTRTN_CAPELK1; FOXO1 (directAnnotation).
TMEM230transfac_pro__M04826EP300 (directAnnotation).
TMEM230taipale_tf_pairs__HOXB2_ETV1_ACCGGAAATGA_CAPETV1; HOXB2 (directAnnotation).
TMEM230metacluster_21.5HOXB2; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4 (directAnnotation). HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4; HSF4; HSF5; HSF5; HSF5; HSF5; HSFX1; HSFX1; HSFX1; HSFX1; HSFX2; HSFX2; HSFX2; HSFX2; HSFX3; HSFX3; HSFX3; HSFX3; HSFX4; HSFX4; HSFX4; HSFX4; HSFY1; HSFY1; HSFY1; HSFY1; HSFY2; HSFY2; HSFY2; HSFY2 (inferredBy_Orthology).
TMEM230taipale_tf_pairs__POU2F1_ELK1_NCCGGATATGCAN_CAPELK1; POU2F1 (directAnnotation).
TMEM230taipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
TMEM230taipale_tf_pairs__TEAD4_ERG_RSCGGAAATRCC_CAPERG; TEAD4 (directAnnotation).
TMEM230taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
TMEM230jaspar__MA1708.1ETV7 (directAnnotation).
TMEM230taipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
TMEM230taipale_tf_pairs__ETV2_RFX5_NNNTTCCGSNNNNGCAACNN_CAP_reprETV2; RFX5 (directAnnotation).
TMEM230taipale_tf_pairs__ETV2_FOXI1_RSCGGATGTTKW_CAPETV2; FOXI1 (directAnnotation).
TMEM230taipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
TMEM230taipale_tf_pairs__ETV2_DRGX_RSCGGAWRYATTA_CAP_reprDRGX; ETV2 (directAnnotation).
TMEM230taipale_tf_pairs__HOXB2_ELF1_NNYMATTANNNNNNNGGAAGNN_CAP_reprELF1; HOXB2 (directAnnotation).
TMEM230taipale_tf_pairs__HOXB2_SPDEF_ANCCGGATNNNNNNMATTA_CAP_reprHOXB2; SPDEF (directAnnotation).
TMEM230taipale_cyt_meth__IRF6_ACCGAWACY_FL_methIRF6 (directAnnotation).
TMEM230taipale__ELK1_full_NACTTCCGSCGGAARMN_reprELK1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."