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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: TCF4

Summary for TCF4

Gene informationGene symbol

TCF4

Ensembl ID

ENSG00000196628

Entrez ID

6925

Gene nametranscription factor 4
SynonymsbHLHb19|E2-2|ITF2|SEF2-1B
Gene typeprotein_coding
UniProtAcc

P15884


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Dataset with differentially expressed gene: TCF4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells1.181310.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.3138711.23e-39

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.3638312.73e-09

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelprepDCs0.5719641.92e-03

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postpDCs0.9866212.93e-02

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.5796652.44e-39

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.5303880.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreB cells-1.625153.22e-06

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.3417820.00e+00

GSE111014

patientsPeripheral blood mononuclear cellsChronic lymphocytic leukemiaChronic lymphocytic leukemia (CLL)Targeted therapyibrutinibpostMalignant cells-0.2634282.40e-09

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Expression of TCF4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to TCF4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

TCF4

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating TCF4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
TCF4hsa-miR-190a-3p99.9907NM_001083962
TCF4hsa-miR-5011-5p99.9875NM_001083962
TCF4hsa-miR-128398.8693NM_001083962
TCF4hsa-miR-629-5p98.7756NM_001083962
TCF4hsa-miR-9983-3p98.4728NM_001083962
TCF4hsa-miR-498-3p97.9006NM_001083962
TCF4hsa-miR-129-5p97.6693NM_001083962
TCF4hsa-miR-568896.7083NM_001083962
TCF4hsa-miR-499b-5p96.5195NM_001083962
TCF4hsa-miR-495-3p95.7475NM_001083962
TCF4hsa-miR-806394.2437NM_001083962
TCF4hsa-miR-299-3p93.5566NM_001083962
TCF4hsa-miR-469893.1554NM_001083962
TCF4hsa-miR-428292.6936NM_001083962
TCF4hsa-miR-520d-5p92.0689NM_001083962
TCF4hsa-miR-524-5p92.0689NM_001083962
TCF4hsa-miR-6793-5p91.8763NM_001083962
TCF4hsa-miR-203a-3p91.7056NM_001083962
TCF4hsa-miR-11181-3p91.3951NM_001083962
TCF4hsa-miR-76591.3951NM_001083962
TCF4hsa-miR-60691.3303NM_001083962
TCF4hsa-miR-1301-3p91.3105NM_001083962
TCF4hsa-miR-504791.3105NM_001083962
TCF4hsa-miR-364689.6047NM_001083962
TCF4hsa-miR-493-5p89.5818NM_001083962
TCF4hsa-miR-892c-5p89.1861NM_001083962
TCF4hsa-miR-190b-5p88.8877NM_001083962
TCF4hsa-miR-190a-5p88.8877NM_001083962
TCF4hsa-miR-7851-3p88.6518NM_001083962
TCF4hsa-miR-6716-5p87.3367NM_001083962
TCF4hsa-miR-4477b87.1852NM_001083962
TCF4hsa-miR-200a-3p86.621NM_001083962
TCF4hsa-miR-141-3p86.621NM_001083962
TCF4hsa-miR-1277-5p86.258NM_001083962
TCF4hsa-miR-548f-5p86.2498NM_001083962
TCF4hsa-miR-548aj-5p86.2498NM_001083962
TCF4hsa-miR-548g-5p86.2498NM_001083962
TCF4hsa-miR-548x-5p86.2498NM_001083962
TCF4hsa-miR-4652-3p86.2047NM_001083962
TCF4hsa-miR-569685.0503NM_001083962
TCF4hsa-miR-4691-3p84.6981NM_001083962
TCF4hsa-miR-335-3p84.5976NM_001083962
TCF4hsa-miR-1468-3p84.5366NM_001083962
TCF4hsa-miR-5583-3p84.1111NM_001083962
TCF4hsa-miR-137-3p83.9711NM_001083962
TCF4hsa-miR-548c-3p83.7622NM_001083962
TCF4hsa-miR-52783.7601NM_001083962
TCF4hsa-miR-518a-5p83.7601NM_001083962
TCF4hsa-miR-335-5p83.7529NM_001083962
TCF4hsa-miR-6839-3p83.7206NM_001083962
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Motifs and transcription factors (TFs) regulating TCF4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
TCF4taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
TCF4transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
TCF4transfac_pro__M07397ZNF148 (directAnnotation).
TCF4metacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
TCF4taipale_cyt_meth__ZNF281_NCCCCTCCCCCN_eDBD_methZNF281 (directAnnotation).
TCF4metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
TCF4metacluster_7.13ZFX (directAnnotation).
TCF4homer__GGGGGGGG_MazMAZ (directAnnotation).
TCF4taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
TCF4transfac_pro__M01303SP1 (directAnnotation).
TCF4metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
TCF4swissregulon__hs__CHD1CHD1 (directAnnotation).
TCF4transfac_pro__M01714KLF15 (directAnnotation).
TCF4metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
TCF4hocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
TCF4metacluster_126.3LIN28B; LIN28B (directAnnotation).
TCF4hocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
TCF4hocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
TCF4metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
TCF4cisbp__M07938E2F1 (directAnnotation).
TCF4kznf__ZNF202_Imbeault2017_OM_MEMEZNF202 (directAnnotation).
TCF4homer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
TCF4taipale_tf_pairs__GCM1_ELF1_GTGCGGGCGGAAGTN_CAP_reprELF1; GCM1 (directAnnotation).
TCF4kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
TCF4transfac_pro__M02898SMAD3 (directAnnotation).
TCF4transfac_public__M00491PATZ1 (directAnnotation).
TCF4metacluster_135.8ZNF516; ZNF536 (inferredBy_Orthology).
TCF4taipale__YY2_DBD_NNCCGCCATNW_reprYY2 (directAnnotation).
TCF4metacluster_141.2E2F2; E2F3 (directAnnotation).
TCF4hdpi__TP73TP73 (directAnnotation).
TCF4metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
TCF4taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
TCF4metacluster_172.6CHD2; E2F1 (directAnnotation).
TCF4metacluster_141.6MZF1; TAF1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZNF597 (directAnnotation). TAF1; TAF1L (inferredBy_Orthology).
TCF4metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
TCF4taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
TCF4taipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
TCF4taipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
TCF4hdpi__FLI1FLI1 (directAnnotation).
TCF4taipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
TCF4metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
TCF4taipale_tf_pairs__ETV5_FOXI1_RSCGGATGTTGN_CAPETV5; FOXI1 (directAnnotation).
TCF4jaspar__MA1935.1FOXI1 (directAnnotation).
TCF4metacluster_166.5ERG; ETV2; FLI1 (directAnnotation).
TCF4taipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
TCF4taipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
TCF4transfac_pro__M00492STAT1 (directAnnotation).
TCF4swissregulon__hs__ETV6ETV6 (directAnnotation).
TCF4stark__RCGCMATTWYY1 (inferredBy_Orthology).
TCF4taipale_tf_pairs__ETV5_FOXI1_TGTTGNCGGAWRN_CAPETV5; FOXI1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."