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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SYS1

Summary for SYS1

Gene informationGene symbol

SYS1

Ensembl ID

ENSG00000204070

Entrez ID

90196

Gene nameSYS1 golgi trafficking protein
SynonymsC20orf169|dJ453C12.4
Gene typeprotein_coding
UniProtAcc

Q8N2H4


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Dataset with differentially expressed gene: SYS1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.8198261.56e-02

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.3250591.48e-33

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.3007160.00e+00

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Expression of SYS1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SYS1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SYS1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SYS1hsa-miR-4645-3p93.7809NM_001099791
SYS1hsa-miR-330-5p90.9833NM_001197129
SYS1hsa-miR-1213289.8536NM_001197129
SYS1hsa-miR-548c-3p89.5195NM_001197129
SYS1hsa-miR-670-3p87.6923NM_001099791
SYS1hsa-miR-4474-3p86.7858NM_001197129
SYS1hsa-miR-128386.49NM_001099791
SYS1hsa-miR-32686.2237NM_001197129
SYS1hsa-miR-6833-3p83.1701NM_001197129
SYS1hsa-miR-500b-5p83.0819NM_001197129
SYS1hsa-miR-362-5p83.0819NM_001197129
SYS1hsa-miR-606982.7734NM_001099791
SYS1hsa-miR-425882.6254NM_001197129
SYS1hsa-miR-6873-3p82.3449NM_001197129
SYS1hsa-miR-7111-3p81.0125NM_001197129
SYS1hsa-miR-4795-3p80.9699NM_001197129
SYS1hsa-miR-519a-2-5p80.7702NM_001099791
SYS1hsa-miR-520b-5p80.7702NM_001099791
SYS1hsa-miR-6764-5p80.6595NM_001197129
SYS1hsa-miR-76080.4909NM_001099791
SYS1hsa-miR-6893-5p80.3757NM_001197129
SYS1hsa-miR-6808-5p80.3757NM_001197129
SYS1hsa-miR-94080.3757NM_001197129
Page: 1

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Motifs and transcription factors (TFs) regulating SYS1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SYS1taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
SYS1taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
SYS1taipale_tf_pairs__ELK1_EOMES_TNRCACCGGAAGN_CAPELK1; EOMES (directAnnotation).
SYS1taipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
SYS1jaspar__MA1708.1ETV7 (directAnnotation).
SYS1taipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_2ELK1; GCM1 (directAnnotation).
SYS1metacluster_161.4LHX9 (directAnnotation).
SYS1taipale_tf_pairs__ERF_TBX21_TMACACCGGAAG_CAPERF; TBX21 (directAnnotation).
SYS1metacluster_161.3LHX9 (directAnnotation).
Page: 1

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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."