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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SRSF6

Summary for SRSF6

Gene informationGene symbol

SRSF6

Ensembl ID

ENSG00000124193

Entrez ID

6431

Gene nameserine and arginine rich splicing factor 6
SynonymsB52|SFRS6|SRP55
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: SRSF6

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE131984_Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)ChemotherapypaclitaxelNAMalignant cells0.2561697.46e-09

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.2502590.00e+00

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepostMalignant cells-0.2883051.87e-07

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.6596780.00e+00

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Expression of SRSF6 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SRSF6

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SRSF6

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SRSF6hsa-miR-10527-5p98.0251NM_006275
SRSF6hsa-miR-128397.5455NM_006275
SRSF6hsa-miR-10526-3p97.0491NM_006275
SRSF6hsa-miR-5590-3p95.5532NM_006275
SRSF6hsa-miR-142-5p95.5532NM_006275
SRSF6hsa-miR-548l95.0077NM_006275
SRSF6hsa-miR-548n94.9595NM_006275
SRSF6hsa-miR-182-5p93.9212NM_006275
SRSF6hsa-miR-506-3p93.9172NM_006275
SRSF6hsa-miR-124-3p93.9172NM_006275
SRSF6hsa-miR-442293.0077NM_006275
SRSF6hsa-miR-146a-5p92.9949NM_006275
SRSF6hsa-miR-146b-5p92.9949NM_006275
SRSF6hsa-miR-7153-5p92.9949NM_006275
SRSF6hsa-miR-6835-3p92.9698NM_006275
SRSF6hsa-miR-551b-5p92.7847NM_006275
SRSF6hsa-miR-6768-5p92.7461NM_006275
SRSF6hsa-miR-429192.2558NM_006275
SRSF6hsa-miR-19a-3p92.1201NM_006275
SRSF6hsa-miR-19b-3p92.1201NM_006275
SRSF6hsa-miR-316391.8951NM_006275
SRSF6hsa-miR-548av-5p91.7429NM_006275
SRSF6hsa-miR-805491.7429NM_006275
SRSF6hsa-miR-548k91.7429NM_006275
SRSF6hsa-miR-4701-5p91.1568NM_006275
SRSF6hsa-miR-58891.1568NM_006275
SRSF6hsa-miR-32-3p90.8999NM_006275
SRSF6hsa-miR-477590.4571NM_006275
SRSF6hsa-miR-370-3p90.3449NM_006275
SRSF6hsa-miR-6893-3p90.3449NM_006275
SRSF6hsa-miR-3692-3p90.1218NM_006275
SRSF6hsa-miR-548ad-5p87.6062NM_006275
SRSF6hsa-miR-548y87.6062NM_006275
SRSF6hsa-miR-548ak87.6062NM_006275
SRSF6hsa-miR-548o-5p87.6062NM_006275
SRSF6hsa-miR-548h-5p87.6062NM_006275
SRSF6hsa-miR-548c-5p87.6062NM_006275
SRSF6hsa-miR-548ae-5p87.6062NM_006275
SRSF6hsa-miR-548ar-5p87.6062NM_006275
SRSF6hsa-miR-548aq-5p87.6062NM_006275
SRSF6hsa-miR-548w87.6062NM_006275
SRSF6hsa-miR-548a-5p87.6062NM_006275
SRSF6hsa-miR-548d-5p87.6062NM_006275
SRSF6hsa-miR-548b-5p87.6062NM_006275
SRSF6hsa-miR-548au-5p87.6062NM_006275
SRSF6hsa-miR-548ay-5p87.6062NM_006275
SRSF6hsa-miR-548bb-5p87.6062NM_006275
SRSF6hsa-miR-548am-5p87.6062NM_006275
SRSF6hsa-miR-548an87.5835NM_006275
SRSF6hsa-miR-92287.5338NM_006275
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Motifs and transcription factors (TFs) regulating SRSF6

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SRSF6taipale_tf_pairs__ETV2_HOXA2_NCCGGAAGTMATTA_CAP_reprETV2; HOXA2 (directAnnotation).
SRSF6taipale_tf_pairs__ELK1_HOXA1_RCCGGAAGTAATTA_HTELK1; HOXA1 (directAnnotation).
SRSF6taipale_tf_pairs__ETV5_FOXI1_RSCGGATGTTGN_CAPETV5; FOXI1 (directAnnotation).
SRSF6swissregulon__hs__ETV6ETV6 (directAnnotation).
SRSF6taipale_tf_pairs__HOXB2_ETV1_ACCGGAAATGA_CAPETV1; HOXB2 (directAnnotation).
SRSF6taipale_tf_pairs__ETV2_SPDEF_NSCGGACGGAWATCCGSNT_CAPETV2; SPDEF (directAnnotation).
SRSF6taipale_tf_pairs__HOXB2_ELK3_RSCGGAAGTMRTTA_CAPELK3; HOXB2 (directAnnotation).
SRSF6taipale_cyt_meth__ZBTB2_NTTTCCGGTAMN_eDBD_meth_reprZBTB2 (directAnnotation).
SRSF6transfac_pro__M05956BCL11B (directAnnotation).
SRSF6metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
SRSF6dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
SRSF6cisbp__M08198ELF1 (directAnnotation).
SRSF6taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
SRSF6metacluster_174.3MBD2; NFYA; NFYB; NFYC; PBX3 (directAnnotation).
SRSF6metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."