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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SRGAP1

Summary for SRGAP1

Gene informationGene symbol

SRGAP1

Ensembl ID

ENSG00000196935

Entrez ID

57522

Gene nameSLIT-ROBO Rho GTPase activating protein 1
SynonymsARHGAP13|KIAA1304
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: SRGAP1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.7738760.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2715551.92e-29

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells0.2508870.00e+00

GSE164897_Vem

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenibNAMalignant cells0.289410.00e+00

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Expression of SRGAP1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SRGAP1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SRGAP1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SRGAP1hsa-miR-5195-3p99.8504NM_020762
SRGAP1hsa-miR-145-5p99.7398NM_020762
SRGAP1hsa-miR-124-3p95.5457NM_020762
SRGAP1hsa-miR-506-3p95.5457NM_020762
SRGAP1hsa-miR-340-5p93.9204NM_020762
SRGAP1hsa-miR-450092.7203NM_020762
SRGAP1hsa-miR-3944-5p92.5918NM_020762
SRGAP1hsa-miR-452192.1246NM_020762
SRGAP1hsa-miR-447891.9997NM_020762
SRGAP1hsa-miR-664b-3p91.8956NM_020762
SRGAP1hsa-miR-579-3p91.8956NM_020762
SRGAP1hsa-miR-130591.7322NM_020762
SRGAP1hsa-miR-302d-5p91.5898NM_020762
SRGAP1hsa-miR-302b-5p91.5898NM_020762
SRGAP1hsa-miR-3074-5p91.4123NM_020762
SRGAP1hsa-miR-129091.3666NM_020762
SRGAP1hsa-miR-548an91.2346NM_020762
SRGAP1hsa-miR-651-3p90.9681NM_020762
SRGAP1hsa-miR-445890.8082NM_020762
SRGAP1hsa-let-7d-5p90.8082NM_020762
SRGAP1hsa-miR-3925-3p90.615NM_020762
SRGAP1hsa-let-7g-5p90.3935NM_020762
SRGAP1hsa-miR-98-5p90.3935NM_020762
SRGAP1hsa-let-7c-5p90.3935NM_020762
SRGAP1hsa-let-7e-5p90.3935NM_020762
SRGAP1hsa-let-7i-5p90.3935NM_020762
SRGAP1hsa-let-7b-5p90.3935NM_020762
SRGAP1hsa-let-7a-5p90.3935NM_020762
SRGAP1hsa-let-7f-5p90.3935NM_020762
SRGAP1hsa-miR-1140189.8578NM_020762
SRGAP1hsa-miR-493-5p89.7261NM_020762
SRGAP1hsa-miR-20a-5p89.2126NM_020762
SRGAP1hsa-miR-106b-5p89.2126NM_020762
SRGAP1hsa-miR-519b-3p88.8984NM_020762
SRGAP1hsa-miR-519a-3p88.8984NM_020762
SRGAP1hsa-miR-519c-3p88.8984NM_020762
SRGAP1hsa-miR-129788.808NM_020762
SRGAP1hsa-miR-526b-3p88.7154NM_020762
SRGAP1hsa-miR-20b-5p88.7154NM_020762
SRGAP1hsa-miR-106a-5p88.7154NM_020762
SRGAP1hsa-miR-519d-3p88.7154NM_020762
SRGAP1hsa-miR-17-5p88.7154NM_020762
SRGAP1hsa-miR-93-5p88.7154NM_020762
SRGAP1hsa-miR-132388.3876NM_020762
SRGAP1hsa-miR-548o-3p88.3876NM_020762
SRGAP1hsa-miR-426388.2033NM_020762
SRGAP1hsa-miR-19887.7742NM_020762
SRGAP1hsa-miR-6854-5p87.3825NM_020762
SRGAP1hsa-miR-200b-3p87.1433NM_020762
SRGAP1hsa-miR-42987.1433NM_020762
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Motifs and transcription factors (TFs) regulating SRGAP1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SRGAP1metacluster_7.13ZFX (directAnnotation).
SRGAP1cisbp__M01863ZNF711 (inferredBy_Orthology).
SRGAP1metacluster_151.2ZNF23 (directAnnotation).
SRGAP1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
SRGAP1metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SRGAP1kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
SRGAP1metacluster_144.3ZNF704; ZNF704 (directAnnotation).
SRGAP1homer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
SRGAP1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
SRGAP1jaspar__MA0079.5SP1 (directAnnotation).
SRGAP1taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
SRGAP1taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
SRGAP1kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
SRGAP1kznf__ZNF777_Imbeault2017_RP_ChIP-seqZNF777 (directAnnotation).
SRGAP1metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
SRGAP1metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
SRGAP1metacluster_3.14WT1; WT1 (directAnnotation).
SRGAP1swissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
SRGAP1cisbp__M07938E2F1 (directAnnotation).
SRGAP1metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
SRGAP1dbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
SRGAP1transfac_pro__M04950EGR1 (directAnnotation).
SRGAP1metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
SRGAP1taipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
SRGAP1taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
SRGAP1taipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
SRGAP1metacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
SRGAP1transfac_pro__M00652NRF1 (directAnnotation).
SRGAP1transfac_pro__M04866HDAC2 (directAnnotation).
SRGAP1jaspar__MA1122.1TFDP1 (directAnnotation).
SRGAP1metacluster_171.4TEAD1; TEAD1; TEAD1; TEAD1; TEAD3; TEAD3; TEAD4; TEAD4; TEAD4; TEAD4 (directAnnotation). TEAD1; TEAD2; TEAD4; TEAD4 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."