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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: SMARCA5

Summary for SMARCA5

Gene informationGene symbol

SMARCA5

Ensembl ID

ENSG00000153147

Entrez ID

8467

Gene nameSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
SynonymshISWI|hSNF2H|ISWI
Gene typeprotein_coding
UniProtAcc

O60264


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Dataset with differentially expressed gene: SMARCA5

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.4725665.59e-37

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostPlasma cells-0.2606871.39e-06

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD4+ T cells0.2505230.00e+00

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.3003092.13e-11

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.3761960.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2502783.97e-35

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4370263.01e-31

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Expression of SMARCA5 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SMARCA5

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SMARCA5

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SMARCA5hsa-miR-98-3p99.2991NM_003601
SMARCA5hsa-let-7b-3p99.2991NM_003601
SMARCA5hsa-let-7f-1-3p99.2991NM_003601
SMARCA5hsa-let-7a-3p99.2991NM_003601
SMARCA5hsa-miR-548at-5p98.535NM_003601
SMARCA5hsa-miR-472998.4983NM_003601
SMARCA5hsa-miR-6513-3p98.3893NM_003601
SMARCA5hsa-miR-60697.5549NM_003601
SMARCA5hsa-miR-569696.3825NM_003601
SMARCA5hsa-miR-56995.9031NM_003601
SMARCA5hsa-miR-548ah-5p95.0043NM_003601
SMARCA5hsa-miR-360994.7642NM_003601
SMARCA5hsa-miR-684494.0112NM_003601
SMARCA5hsa-miR-99a-5p93.9611NM_003601
SMARCA5hsa-miR-100-5p93.9611NM_003601
SMARCA5hsa-miR-99b-5p93.9611NM_003601
SMARCA5hsa-miR-428293.7445NM_003601
SMARCA5hsa-miR-101-3p93.0502NM_003601
SMARCA5hsa-miR-471992.0194NM_003601
SMARCA5hsa-miR-806291.9667NM_003601
SMARCA5hsa-miR-3180-5p91.952NM_003601
SMARCA5hsa-miR-548t-5p91.6797NM_003601
SMARCA5hsa-miR-548az-5p91.6797NM_003601
SMARCA5hsa-miR-335-3p91.2796NM_003601
SMARCA5hsa-miR-429190.3394NM_003601
SMARCA5hsa-miR-3606-5p89.8963NM_003601
SMARCA5hsa-miR-511-5p89.2212NM_003601
SMARCA5hsa-miR-29b-1-5p88.2178NM_003601
SMARCA5hsa-miR-316388.2145NM_003601
SMARCA5hsa-miR-367-5p87.8697NM_003601
SMARCA5hsa-miR-92187.758NM_003601
SMARCA5hsa-miR-551b-5p87.2193NM_003601
SMARCA5hsa-miR-4789-5p87.1748NM_003601
SMARCA5hsa-miR-548aj-3p87.0443NM_003601
SMARCA5hsa-miR-548x-3p87.0443NM_003601
SMARCA5hsa-miR-4666a-3p85.7543NM_003601
SMARCA5hsa-miR-561-3p85.3387NM_003601
SMARCA5hsa-miR-33a-5p84.922NM_003601
SMARCA5hsa-miR-33b-5p84.922NM_003601
SMARCA5hsa-miR-444384.7101NM_003601
SMARCA5hsa-miR-3925-3p84.6043NM_003601
SMARCA5hsa-miR-364684.5517NM_003601
SMARCA5hsa-miR-6892-5p84.4685NM_003601
SMARCA5hsa-miR-6762-3p84.3241NM_003601
SMARCA5hsa-miR-548aq-3p82.9992NM_003601
SMARCA5hsa-miR-548am-3p82.9992NM_003601
SMARCA5hsa-miR-548ae-3p82.9992NM_003601
SMARCA5hsa-miR-548ah-3p82.9992NM_003601
SMARCA5hsa-miR-548j-3p82.9992NM_003601
SMARCA5hsa-miR-447582.8294NM_003601
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Motifs and transcription factors (TFs) regulating SMARCA5

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SMARCA5metacluster_7.13ZFX (directAnnotation).
SMARCA5cisbp__M01863ZNF711 (inferredBy_Orthology).
SMARCA5taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
SMARCA5metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
SMARCA5metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SMARCA5hdpi__ETV4ETV4 (directAnnotation).
SMARCA5transfac_pro__M06071ZNF814 (directAnnotation).
SMARCA5jaspar__MA0079.5SP1 (directAnnotation).
SMARCA5cisbp__M00968MTF2 (directAnnotation).
SMARCA5metacluster_160.20JUND; PRDM15 (directAnnotation).
SMARCA5metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
SMARCA5metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
SMARCA5jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
SMARCA5metacluster_61.1DEAF1; DEAF1 (directAnnotation).
SMARCA5cisbp__M00788ZFY (inferredBy_Orthology).
SMARCA5kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
SMARCA5metacluster_175.1ZNF283 (directAnnotation).
SMARCA5hdpi__ZNF304ZNF304 (directAnnotation).
SMARCA5transfac_pro__M02844BCL6B (inferredBy_Orthology).
SMARCA5metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
SMARCA5metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SMARCA5kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
SMARCA5transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SMARCA5transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SMARCA5transfac_pro__M03806ZBTB7C (directAnnotation).
SMARCA5transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SMARCA5transfac_pro__M04826EP300 (directAnnotation).
SMARCA5metacluster_33.8BRCA1; CHD2; CHD2; ETS1; NR3C1; ZBED1; ZBED1; ZBED1; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33 (directAnnotation). CHD2; ZBTB33 (inferredBy_Orthology).
SMARCA5metacluster_141.2E2F2; E2F3 (directAnnotation).
SMARCA5metacluster_141.6MZF1; TAF1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZNF597 (directAnnotation). TAF1; TAF1L (inferredBy_Orthology).
SMARCA5transfac_pro__M04862NRF1 (directAnnotation).
SMARCA5jaspar__MA0748.2YY2 (directAnnotation).
SMARCA5taipale_tf_pairs__MYBL1_EOMES_RSGTGNNNAACGK_CAP_reprEOMES; MYBL1 (directAnnotation).
SMARCA5cisbp__M02645ETS1 (directAnnotation).
SMARCA5taipale_tf_pairs__GCM2_SOX15_ATRCGGGYNNNNNYWTTGTNN_CAP_reprGCM2; SOX15 (directAnnotation).
SMARCA5metacluster_58.2SOX10; SOX9; SOX9 (directAnnotation).
SMARCA5taipale_cyt_meth__CDX2_NRTCGTAAANNN_eDBD_methCDX2 (directAnnotation).
SMARCA5transfac_pro__M06267ZNF805 (directAnnotation).
SMARCA5metacluster_141.9TAF1; YY1; YY1 (directAnnotation).
SMARCA5metacluster_45.6E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F4; E2F4 (directAnnotation). E2F2; E2F3 (inferredBy_Orthology).
SMARCA5taipale_tf_pairs__ELK1_TEF_NSCGGAWNTTACGTAAN_CAPELK1; TEF (directAnnotation).
SMARCA5jaspar__MA1154.1ZNF282 (directAnnotation).
SMARCA5transfac_pro__M06055ZNF99 (directAnnotation).
SMARCA5metacluster_164.2HMBOX1 (directAnnotation).
SMARCA5metacluster_168.16FOXG1 (inferredBy_Orthology).
SMARCA5flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
SMARCA5hdpi__NRLNRL (directAnnotation).
SMARCA5transfac_pro__M07310SP5 (directAnnotation).
SMARCA5cisbp__M07938E2F1 (directAnnotation).
SMARCA5transfac_pro__M02933ZBTB14 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
SMARCA5"4-Deoxy-Alpha-D-Glucose"

DB02670

small molecule
SMARCA5"Beta-D-Glucose"

DB02379

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."